Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06602 Brassica carinata HOM05D017894 ORTHO05D000283 1.5e-62 242.7 119 100.0
BolC9t56750H Brassica oleracea HOM05D000003 ORTHO05D012422 1.1e-14 83.6 97 46.4
Carub.0001s4199 Capsella rubella HOM05D000003 ORTHO05D000283 1.1e-14 83.6 76 50.0
Carub.0003s2082 Capsella rubella HOM05D000003 ORTHO05D000283 1.1e-14 83.6 76 50.0
BcaC04g19936 Brassica carinata HOM05D017894 ORTHO05D012422 2.0e-14 82.8 103 44.7
BolC9t57812H Brassica oleracea HOM05D000003 ORTHO05D000283 2.0e-14 82.8 103 44.7
BcaB06g28417 Brassica carinata HOM05D000003 ORTHO05D000283 2.5e-14 82.4 86 48.8
BraA04t17757Z Brassica rapa HOM05D000003 ORTHO05D000283 7.4e-14 80.9 81 45.7
BcaC08g45939 Brassica carinata HOM05D000003 ORTHO05D021943 6.3e-13 77.8 72 52.8
BcaC02g12080 Brassica carinata HOM05D000003 ORTHO05D000006 3.1e-12 75.5 96 37.5
BcaC07g42553 Brassica carinata HOM05D000003 ORTHO05D000283 4.1e-12 75.1 79 45.6
A03p07590 Brassica napus HOM05D000003 ORTHO05D000283 1.5e-11 73.2 72 45.8
BraA03t10087Z Brassica rapa HOM05D000003 ORTHO05D000283 1.5e-11 73.2 72 45.8
BcaC06g36271 Brassica carinata HOM05D017894 ORTHO05D012422 1.0e-10 70.5 73 41.1
BolC2t07364H Brassica oleracea HOM05D017894 ORTHO05D012422 1.0e-10 70.5 106 42.5
AT4G05095 Arabidopsis thaliana HOM05D000003 ORTHO05D000283 2.2e-10 69.3 74 48.6
Carub.0005s2988 Capsella rubella HOM05D000003 ORTHO05D000283 3.8e-10 68.6 72 45.8
AL6G39210 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 6.5e-10 67.8 73 43.8
Carub.0006s0619 Capsella rubella HOM05D000003 ORTHO05D000283 6.5e-10 67.8 86 41.9
BcaC07g39116 Brassica carinata HOM05D000003 ORTHO05D000283 8.5e-10 67.4 103 35.9
BolC1t01432H Brassica oleracea HOM05D000003 ORTHO05D000283 8.5e-10 67.4 99 38.4
BolC8t47863H Brassica oleracea HOM05D000003 ORTHO05D000283 2.5e-09 65.9 72 40.3
C02p62290 Brassica napus HOM05D002504 ORTHO05D007332 2.1e-08 62.8 73 39.7
BolC2t12286H Brassica oleracea HOM05D002504 ORTHO05D007332 2.1e-08 62.8 73 39.7
BolC6t35343H Brassica oleracea HOM05D000003 ORTHO05D000283 2.1e-08 62.8 72 40.3
BolC7t40516H Brassica oleracea HOM05D000003 ORTHO05D000283 2.1e-08 62.8 72 40.3
C04p06330 Brassica napus HOM05D000003 ORTHO05D012422 3.6e-08 62.0 79 38.0
C05p60790 Brassica napus HOM05D000003 ORTHO05D000283 3.6e-08 62.0 79 38.0
AL7G34100 Arabidopsis lyrata HOM05D000003 ORTHO05D000004 4.7e-08 61.6 72 38.9
BcaC07g41287 Brassica carinata HOM05D000003 ORTHO05D000283 4.7e-08 61.6 79 39.2
C07p39070 Brassica napus HOM05D000003 ORTHO05D000283 4.7e-08 61.6 72 38.9
BcaNung06273 Brassica carinata HOM05D000003 ORTHO05D012422 7.9e-08 60.8 75 36.0
C05p54630 Brassica napus HOM05D000003 ORTHO05D012422 7.9e-08 60.8 75 37.3
BraA09t37613Z Brassica rapa HOM05D000003 ORTHO05D000283 7.9e-08 60.8 72 40.3
Carub.0003s3092 Capsella rubella HOM05D000003 ORTHO05D000283 1.0e-07 60.5 73 34.2
AL2G10360 Arabidopsis lyrata HOM05D000003 ORTHO05D000004 1.8e-07 59.7 60 45.0
C06p04470 Brassica napus HOM05D000003 ORTHO05D000283 1.8e-07 59.7 79 36.7
A08p00140 Brassica napus HOM05D000003 ORTHO05D000283 3.0e-07 58.9 82 37.8
BcaC03g14082 Brassica carinata HOM05D000003 ORTHO05D000283 3.9e-07 58.5 74 40.5
BcaB02g09747 Brassica carinata HOM05D017894 ORTHO05D000283 5.1e-07 58.2 71 39.4
BolC8t49518H Brassica oleracea HOM05D000003 ORTHO05D000283 5.1e-07 58.2 106 31.1
AT2G02520 Arabidopsis thaliana HOM05D000003 ORTHO05D000283 6.7e-07 57.8 72 36.1
BolC5t32422H Brassica oleracea HOM05D000003 ORTHO05D000283 8.8e-07 57.4 74 37.8
BolC7t41377H Brassica oleracea HOM05D000003 ORTHO05D000283 8.8e-07 57.4 72 38.9
AT1G43730 Arabidopsis thaliana HOM05D000003 ORTHO05D000283 1.1e-06 57.0 72 37.5
AT4G04650 Arabidopsis thaliana HOM05D000003 ORTHO05D000283 1.1e-06 57.0 71 43.7
BcaC05g29952 Brassica carinata HOM05D000003 ORTHO05D000283 1.1e-06 57.0 74 39.2
AL4G28120 Arabidopsis lyrata HOM05D000003 ORTHO05D000283 1.5e-06 56.6 67 41.8
BolC3t16330H Brassica oleracea HOM05D000003 ORTHO05D000283 2.0e-06 56.2 69 37.7
C02p43250 Brassica napus HOM05D000003 ORTHO05D000283 2.6e-06 55.8 65 40.0
C05p36830 Brassica napus HOM05D000003 ORTHO05D000283 2.6e-06 55.8 74 36.5
BolC2t12400H Brassica oleracea HOM05D000003 ORTHO05D000283 2.6e-06 55.8 82 37.8
BolC2t11361H Brassica oleracea HOM05D000003 ORTHO05D012422 3.3e-06 55.5 47 59.6
BraA06t24780Z Brassica rapa HOM05D000003 ORTHO05D000283 4.4e-06 55.1 72 37.5
AL1G61030 Arabidopsis lyrata HOM05D000870 ORTHO05D023656 5.7e-06 54.7 72 37.5
C09p30650 Brassica napus HOM05D001738 ORTHO05D001644 5.7e-06 54.7 46 52.2
C03p26860 Brassica napus HOM05D017894 ORTHO05D012422 7.4e-06 54.3 84 31.0
BraA02t06658Z Brassica rapa HOM05D000003 ORTHO05D000283 7.4e-06 54.3 72 36.1


User provided reference genes

Program Settings