Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06452 Brassica carinata HOM05D007210 ORTHO05D006152 2.1e-97 359.0 175 100.0
A03p13080 Brassica napus HOM05D007210 ORTHO05D006152 2.2e-78 295.8 175 82.9
BcaB01g04427 Brassica carinata HOM05D007210 ORTHO05D006152 6.3e-78 294.3 175 82.3
BolC3t13970H Brassica oleracea HOM05D007210 ORTHO05D006152 2.4e-77 292.4 175 81.1
BcaC01g06454 Brassica carinata HOM05D007210 ORTHO05D006152 4.1e-77 291.6 175 82.3
C03p15300 Brassica napus HOM05D007210 ORTHO05D006152 4.1e-77 291.6 175 82.3
BraA03t10618Z Brassica rapa HOM05D007210 ORTHO05D006152 4.5e-76 288.1 175 80.6
BraA03t10619Z Brassica rapa HOM05D007210 ORTHO05D006152 1.0e-75 287.0 175 81.1
A03p13090 Brassica napus HOM05D007210 ORTHO05D006152 1.4e-72 276.6 169 79.9
BolC3t13971H Brassica oleracea HOM05D007210 ORTHO05D006152 1.3e-70 270.0 169 78.1
BcaC01g06453 Brassica carinata HOM05D007210 ORTHO05D006152 2.8e-70 268.9 169 78.1
BcaNung05242 Brassica carinata HOM05D007210 ORTHO05D006152 2.8e-70 268.9 169 78.1
BcaNung05243 Brassica carinata HOM05D007210 ORTHO05D006152 4.8e-70 268.1 175 78.3
C03p15310 Brassica napus HOM05D007210 ORTHO05D006152 9.4e-66 253.8 175 76.0
BcaB01g04428 Brassica carinata HOM05D007210 ORTHO05D006152 4.2e-58 228.4 143 77.6
CARHR270660 Cardamine hirsuta HOM05D007210 ORTHO05D006152 4.2e-50 201.8 161 65.2
Carub.0008s1740 Capsella rubella HOM05D007210 ORTHO05D006152 4.1e-45 185.3 160 63.8
C09p48590 Brassica napus HOM05D007210 ORTHO05D006152 1.9e-42 176.4 166 57.8
A10p14180 Brassica napus HOM05D007210 ORTHO05D006152 7.2e-42 174.5 176 56.8
BraA10t43511Z Brassica rapa HOM05D007210 ORTHO05D006152 1.4e-40 170.2 170 57.1
A10p14200 Brassica napus HOM05D007210 ORTHO05D006152 3.0e-40 169.1 166 54.8
BraA10t43513Z Brassica rapa HOM05D007210 ORTHO05D006152 3.0e-40 169.1 166 54.8
BolC3t13972H Brassica oleracea HOM05D007210 ORTHO05D006152 2.9e-38 162.5 110 73.6
BcaB08g36043 Brassica carinata HOM05D007210 ORTHO05D006152 3.2e-37 159.1 151 59.6
AL8G32780 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.0e-37 157.9 154 57.1
A10p14190 Brassica napus HOM05D007210 ORTHO05D006152 7.0e-37 157.9 179 52.5
BraA10t43512Z Brassica rapa HOM05D007210 ORTHO05D006152 5.9e-36 154.8 151 58.3
BcaB08g36040 Brassica carinata HOM05D007210 ORTHO05D006152 4.7e-33 145.2 173 50.9
BcaC01g06451 Brassica carinata HOM05D007210 ORTHO05D006152 2.4e-29 132.9 145 52.4
C03p15280 Brassica napus HOM05D008242 ORTHO05D010974 2.7e-28 129.4 169 45.0
BcaC04g20042 Brassica carinata HOM05D007210 ORTHO05D019922 5.0e-27 125.2 112 58.9
BolC9t57696H Brassica oleracea HOM05D007210 ORTHO05D006152 5.0e-27 125.2 112 58.9
Carub.0002s0166 Capsella rubella HOM05D007210 ORTHO05D006152 1.9e-26 123.2 154 44.2
BcaB08g36045 Brassica carinata HOM05D007210 ORTHO05D006152 7.3e-26 121.3 122 53.3
AL2G12250 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.8e-25 119.4 151 45.0
AL2G12300 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.7e-25 118.6 143 42.7
CARHR048290 Cardamine hirsuta HOM05D007210 ORTHO05D006152 4.7e-25 118.6 153 43.1
Carub.0002s0174 Capsella rubella HOM05D007210 ORTHO05D006152 1.8e-24 116.7 154 41.6
AL2G12260 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.0e-23 113.2 145 43.4
AL2G12320 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.5e-23 111.3 153 38.6
Carub.0002s0170 Capsella rubella HOM05D007210 ORTHO05D006152 9.8e-23 110.9 135 40.7
AT1G63190 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.3e-22 110.5 171 39.2
Carub.0002s0167 Capsella rubella HOM05D007210 ORTHO05D006152 3.7e-22 109.0 154 37.0
BcaB07g31384 Brassica carinata HOM05D007210 ORTHO05D006152 6.4e-22 108.2 157 40.1
Carub.0002s0171 Capsella rubella HOM05D007210 ORTHO05D006152 1.4e-21 107.1 159 37.1
AL2G12220 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.9e-21 106.7 144 38.9
Thhalv10023855m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 1.9e-21 106.7 155 38.7
Carub.0002s0168 Capsella rubella HOM05D007210 ORTHO05D006152 2.4e-21 106.3 142 39.4
AT1G63200 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.2e-21 105.9 168 35.7
AL2G12230 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 4.1e-21 105.5 150 37.3
AT1G63205 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 5.4e-21 105.1 154 40.9
Sp2g01360 Schrenkiella parvula HOM05D007210 ORTHO05D006152 5.4e-21 105.1 154 39.6
BcaC04g22476 Brassica carinata HOM05D007210 ORTHO05D006152 7.1e-21 104.8 140 40.0
BolC9t54788H Brassica oleracea HOM05D007210 ORTHO05D006152 7.1e-21 104.8 140 40.0
A09p13520 Brassica napus HOM05D007210 ORTHO05D006152 2.1e-20 103.2 154 37.7
A05p10190 Brassica napus HOM05D007210 ORTHO05D006152 2.7e-20 102.8 160 38.1
BraA05t19960Z Brassica rapa HOM05D007210 ORTHO05D006152 4.6e-20 102.1 138 39.9
Carub.0002s0169 Capsella rubella HOM05D007210 ORTHO05D006152 6.0e-20 101.7 151 35.8
Thhalv10023669m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 6.0e-20 101.7 140 42.1
C03p93270 Brassica napus HOM05D007210 ORTHO05D006152 7.8e-20 101.3 138 39.1
BolC3t21625H Brassica oleracea HOM05D007210 ORTHO05D006152 7.8e-20 101.3 138 39.1
BraA09t37003Z Brassica rapa HOM05D007210 ORTHO05D006152 1.0e-19 100.9 154 36.4
AL2G12280 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 2.3e-19 99.8 126 42.1
A09p15630 Brassica napus HOM05D007210 ORTHO05D006152 2.3e-19 99.8 150 36.0
BraA09t37203Z Brassica rapa HOM05D007210 ORTHO05D006152 2.3e-19 99.8 150 36.0
AT1G63206 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 3.9e-19 99.0 152 36.2
AL2G12270 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 5.1e-19 98.6 148 37.8
AL4G33850 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 6.6e-19 98.2 160 37.5
BraA08t32080Z Brassica rapa HOM05D007210 ORTHO05D006152 8.6e-19 97.8 157 37.6
AT2G37435 Arabidopsis thaliana HOM05D007210 ORTHO05D006152 1.1e-18 97.4 140 38.6
BcaB01g02146 Brassica carinata HOM05D007210 ORTHO05D006152 1.5e-18 97.1 140 37.9
CARHR284440 Cardamine hirsuta HOM05D007210 ORTHO05D006152 1.9e-18 96.7 157 37.6
BcaC02g10394 Brassica carinata HOM05D007210 ORTHO05D006152 4.3e-18 95.5 144 37.5
A09p15620 Brassica napus HOM05D007210 ORTHO05D006152 6.2e-17 91.7 140 37.9
BraA09t37202Z Brassica rapa HOM05D007210 ORTHO05D006152 6.2e-17 91.7 140 37.9
BcaB07g31387 Brassica carinata HOM05D007210 ORTHO05D006152 1.1e-16 90.9 137 35.0
BcaC07g41054 Brassica carinata HOM05D007210 ORTHO05D006152 1.4e-16 90.5 155 34.8
Carub.0004s1936 Capsella rubella HOM05D007210 ORTHO05D006152 2.3e-16 89.7 154 35.7
BolC5t30124H Brassica oleracea HOM05D007210 ORTHO05D006152 6.8e-16 88.2 129 35.7
C05p13910 Brassica napus HOM05D007210 ORTHO05D006152 8.9e-16 87.8 129 35.7
Sp2g04770 Schrenkiella parvula HOM05D007210 ORTHO05D006152 8.9e-16 87.8 118 41.5
Carub.0004s1937 Capsella rubella HOM05D007210 ORTHO05D006152 2.6e-15 86.3 134 36.6
C04p12630 Brassica napus HOM05D007210 ORTHO05D006152 4.4e-15 85.5 154 33.1
BolC4t22912H Brassica oleracea HOM05D007210 ORTHO05D006152 5.8e-15 85.1 163 32.5
Carub.0002s0173 Capsella rubella HOM05D007210 ORTHO05D006152 5.8e-15 85.1 120 40.8
C05p03140 Brassica napus HOM05D007210 ORTHO05D006152 7.6e-15 84.7 155 37.4
CARHR048270 Cardamine hirsuta HOM05D007210 ORTHO05D006152 7.6e-15 84.7 110 40.0
AL2G12200 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 1.7e-14 83.6 94 42.6
A08p00230 Brassica napus HOM05D007210 ORTHO05D006152 1.7e-14 83.6 138 37.7
AL5G33880 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 6.4e-14 81.6 137 35.0
BcaC05g24442 Brassica carinata HOM05D007210 ORTHO05D006152 1.1e-13 80.9 149 33.6
BraA10t42618Z Brassica rapa HOM05D007210 ORTHO05D006152 1.4e-13 80.5 158 36.1
BolC5t29096H Brassica oleracea HOM05D007210 ORTHO05D006152 2.4e-13 79.7 155 36.8
BcaB07g31391 Brassica carinata HOM05D007210 ORTHO05D006152 5.4e-13 78.6 141 35.5
AL52U10010 Arabidopsis lyrata HOM05D007210 ORTHO05D006152 7.1e-13 78.2 75 53.3
BcaNung06875 Brassica carinata HOM05D007210 ORTHO05D006152 1.2e-12 77.4 116 37.1
BcaC02g11660 Brassica carinata HOM05D007210 ORTHO05D006152 3.5e-12 75.9 165 30.9
AT5G05060 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 6.0e-12 75.1 136 37.5
A10p03420 Brassica napus HOM05D007210 ORTHO05D006152 6.0e-12 75.1 119 38.7
AT5G05040 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 2.3e-11 73.2 136 36.8
CARHR208050 Cardamine hirsuta HOM05D008885 ORTHO05D006152 2.3e-11 73.2 134 38.1
Thhalv10023805m.g Eutrema salsugineum HOM05D007210 ORTHO05D006152 5.1e-11 72.0 111 36.9
Lj1A786G23 Lonicera japonica HOM05D011954 ORTHO05D014236 8.6e-11 71.2 138 34.8
AL6G14830 Arabidopsis lyrata HOM05D008885 ORTHO05D006152 1.9e-10 70.1 138 34.1
CSS0039646 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 1.9e-10 70.1 152 29.6
A07p12710 Brassica napus HOM05D008885 ORTHO05D006152 2.5e-10 69.7 125 36.8
CSS0006926 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 2.5e-10 69.7 127 33.9
Sp6g37770 Schrenkiella parvula HOM05D008885 ORTHO05D006152 2.5e-10 69.7 127 37.8
C09p48560 Brassica napus HOM05D007210 ORTHO05D006152 3.3e-10 69.3 68 55.9
BolC9t57698H Brassica oleracea HOM05D007210 ORTHO05D006152 3.3e-10 69.3 68 55.9
AL7G39710 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 4.3e-10 68.9 144 34.7
BraA07t29049Z Brassica rapa HOM05D008885 ORTHO05D006152 1.2e-09 67.4 125 36.0
Carub.0006s0398 Capsella rubella HOM05D008885 ORTHO05D006152 1.6e-09 67.0 139 32.4
BolC8t51626H Brassica oleracea HOM05D007210 ORTHO05D006152 2.1e-09 66.6 98 34.7
Lj1A798T45 Lonicera japonica HOM05D011954 ORTHO05D014236 2.8e-09 66.2 130 30.8
BcaB05g21736 Brassica carinata HOM05D008885 ORTHO05D006152 3.6e-09 65.9 140 30.7
AL7G39700 Arabidopsis lyrata HOM05D008242 ORTHO05D012602 8.1e-09 64.7 146 34.2
QL10p030090 Quercus lobata HOM05D019990 ORTHO05D007789 1.8e-08 63.5 140 36.4
QL10p030102 Quercus lobata HOM05D019990 ORTHO05D007789 3.1e-08 62.8 140 35.7
QL10p030388 Quercus lobata HOM05D019990 ORTHO05D007789 3.1e-08 62.8 114 37.7
QL10p030420 Quercus lobata HOM05D019990 ORTHO05D007789 3.1e-08 62.8 114 37.7
QL10p030347 Quercus lobata HOM05D019990 ORTHO05D007789 4.0e-08 62.4 131 35.9
THA.LOC104809659 Tarenaya hassleriana HOM05D007210 ORTHO05D006152 4.0e-08 62.4 96 40.6
BolC2t06185H Brassica oleracea HOM05D008885 ORTHO05D006152 5.2e-08 62.0 126 33.3
CSS0001720 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 5.2e-08 62.0 152 28.9
CSS0019356 Camellia sinensis var. sinensis HOM05D019829 ORTHO05D007789 5.2e-08 62.0 72 43.1
CARHR048280 Cardamine hirsuta HOM05D007210 ORTHO05D006152 5.2e-08 62.0 85 41.2
Dinv01175 Davidia involucrata HOM05D008623 ORTHO05D007789 5.2e-08 62.0 125 37.6
BcaC03g13143 Brassica carinata HOM05D008885 ORTHO05D006152 6.8e-08 61.6 124 32.3
C02p02150 Brassica napus HOM05D008885 ORTHO05D006152 6.8e-08 61.6 124 32.3
BolC2t06184H Brassica oleracea HOM05D008885 ORTHO05D006152 6.8e-08 61.6 124 32.3
Thhalv10015529m.g Eutrema salsugineum HOM05D008885 ORTHO05D006152 8.9e-08 61.2 140 37.9
BcaB05g21588 Brassica carinata HOM05D008885 ORTHO05D006152 1.2e-07 60.8 124 29.8
BraA02t04833Z Brassica rapa HOM05D008885 ORTHO05D006152 2.0e-07 60.1 124 30.6
Dinv41634 Davidia involucrata HOM05D008623 ORTHO05D007789 2.0e-07 60.1 126 36.5
TWI36G0611 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 2.0e-07 60.1 128 32.0
Carub.0002s0164 Capsella rubella HOM05D007210 ORTHO05D006152 2.6e-07 59.7 46 54.3
BcaB05g21732 Brassica carinata HOM05D008885 ORTHO05D006152 4.4e-07 58.9 124 30.6
BcaB05g21733 Brassica carinata HOM05D008885 ORTHO05D006152 4.4e-07 58.9 124 30.6
CARHR208210 Cardamine hirsuta HOM05D008885 ORTHO05D006152 5.8e-07 58.5 138 30.4
vmacro16961 Vaccinium macrocarpon HOM05D009663 ORTHO05D007789 5.8e-07 58.5 127 34.6
BcaC03g13144 Brassica carinata HOM05D008885 ORTHO05D006152 7.6e-07 58.2 124 30.6
C02p02160 Brassica napus HOM05D008885 ORTHO05D006152 7.6e-07 58.2 124 30.6
AT1G50690 Arabidopsis thaliana HOM05D008885 ORTHO05D006152 1.3e-06 57.4 110 35.5
TWI73G0112 Tripterygium wilfordii HOM05D018753 ORTHO05D007789 1.3e-06 57.4 151 29.1
Carub.0007s2602 Capsella rubella HOM05D008242 ORTHO05D012602 2.2e-06 56.6 126 30.2
BraA02t04831Z Brassica rapa HOM05D008885 ORTHO05D006152 2.9e-06 56.2 110 30.0
BcaC03g13142 Brassica carinata HOM05D008885 ORTHO05D006152 4.9e-06 55.5 110 30.0
BolC2t06182H Brassica oleracea HOM05D008885 ORTHO05D006152 4.9e-06 55.5 110 30.0


User provided reference genes

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