Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05788 Brassica carinata HOM05D002924 ORTHO05D003122 2.1e-58 228.8 114 100.0
C03p22400 Brassica napus HOM05D002924 ORTHO05D003122 2.1e-58 228.8 114 100.0
BolC3t14623H Brassica oleracea HOM05D002924 ORTHO05D003122 3.6e-58 228.0 114 99.1
BraA03t11175Z Brassica rapa HOM05D002924 ORTHO05D003122 1.1e-51 206.5 114 90.4
BcaC01g05787 Brassica carinata HOM05D002924 ORTHO05D003122 1.0e-49 199.9 100 100.0
A03p19200 Brassica napus HOM05D002924 ORTHO05D003122 1.5e-48 196.1 115 87.8
BcaB01g06369 Brassica carinata HOM05D002924 ORTHO05D003122 3.5e-45 184.9 115 82.6
Sp4g16870 Schrenkiella parvula HOM05D002924 ORTHO05D003122 7.6e-32 140.6 119 70.6
BcaB06g28785 Brassica carinata HOM05D002924 ORTHO05D003122 2.2e-31 139.0 119 67.2
BolC4t27859H Brassica oleracea HOM05D002924 ORTHO05D003122 2.1e-29 132.5 123 64.2
A04p26500 Brassica napus HOM05D002924 ORTHO05D003122 1.0e-28 130.2 121 66.1
C04p63920 Brassica napus HOM05D002924 ORTHO05D003122 1.0e-28 130.2 121 66.1
BraA04t18154Z Brassica rapa HOM05D002924 ORTHO05D003122 6.6e-28 127.5 121 65.3
AT2G34600 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 6.2e-26 120.9 130 56.9
CARHR128700 Cardamine hirsuta HOM05D002924 ORTHO05D003122 3.1e-25 118.6 125 58.4
Carub.0004s1628 Capsella rubella HOM05D002924 ORTHO05D003122 8.9e-25 117.1 130 54.6
BraA05t20050Z Brassica rapa HOM05D002924 ORTHO05D003122 2.0e-24 115.9 119 63.0
AL270U10010 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 2.6e-24 115.5 130 56.9
AL4G30580 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 4.4e-24 114.8 130 56.9
BcaB02g09523 Brassica carinata HOM05D002924 ORTHO05D003122 7.6e-24 114.0 119 59.7
BcaC02g11537 Brassica carinata HOM05D002924 ORTHO05D003122 7.6e-24 114.0 119 62.2
C04p14200 Brassica napus HOM05D002924 ORTHO05D003122 7.6e-24 114.0 119 62.2
BolC4t23009H Brassica oleracea HOM05D002924 ORTHO05D003122 7.6e-24 114.0 119 62.2
A05p11050 Brassica napus HOM05D002924 ORTHO05D003122 2.2e-23 112.5 119 61.3
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 1.8e-17 92.8 133 47.4
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 2.0e-16 89.4 129 44.2
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 2.0e-16 89.4 129 44.2
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 2.0e-16 89.4 129 44.2
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 2.0e-16 89.4 129 44.2
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 2.6e-16 89.0 130 44.6
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 7.6e-16 87.4 128 43.8
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 1.3e-15 86.7 129 45.0
BcaC01g00164 Brassica carinata HOM05D002924 ORTHO05D003122 4.9e-15 84.7 127 41.7
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 1.9e-14 82.8 130 43.1
BcaC05g27039 Brassica carinata HOM05D002924 ORTHO05D003122 3.2e-14 82.0 128 40.6
C05p28990 Brassica napus HOM05D002924 ORTHO05D003122 3.2e-14 82.0 128 40.6
BolC5t31621H Brassica oleracea HOM05D002924 ORTHO05D003122 3.2e-14 82.0 128 40.6
BcaB07g32615 Brassica carinata HOM05D002924 ORTHO05D003122 6.0e-13 77.8 129 41.1
Carub.0001s2837 Capsella rubella HOM05D002924 ORTHO05D003122 7.9e-13 77.4 132 45.5
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 1.3e-12 76.6 119 45.4
BraA09t39160Z Brassica rapa HOM05D002924 ORTHO05D003122 6.7e-12 74.3 129 39.5
BcaB04g17519 Brassica carinata HOM05D002924 ORTHO05D003122 4.3e-11 71.6 67 64.2
A09p36360 Brassica napus HOM05D002924 ORTHO05D003122 4.3e-11 71.6 129 38.8
C03p76460 Brassica napus HOM05D002924 ORTHO05D003122 2.8e-10 68.9 79 49.4
Thhalv10009598m.g Eutrema salsugineum HOM05D002924 ORTHO05D003122 2.4e-09 65.9 134 39.6
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 1.5e-08 63.2 121 39.7
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 4.5e-08 61.6 121 39.7
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 5.8e-08 61.2 121 39.7
THA.LOC104814306 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 9.9e-08 60.5 145 37.9
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 1.3e-07 60.1 119 38.7
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 1.7e-07 59.7 125 38.4
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 2.9e-07 58.9 121 37.2
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 2.9e-07 58.9 124 37.1
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 3.8e-07 58.5 119 38.7
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 3.8e-07 58.5 134 35.8
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.8e-07 58.5 121 41.3
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 4.9e-07 58.2 119 39.5
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 6.4e-07 57.8 126 37.3
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 8.4e-07 57.4 134 36.6
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 1.1e-06 57.0 138 37.0
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 1.1e-06 57.0 129 38.0
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 1.4e-06 56.6 121 39.7
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 2.4e-06 55.8 121 41.3
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 2.4e-06 55.8 123 36.6
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 3.2e-06 55.5 130 32.3
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 4.2e-06 55.1 117 39.3
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 4.2e-06 55.1 119 35.3
TWI53G1424 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 7.1e-06 54.3 125 36.0
THA.LOC104820654 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 9.3e-06 53.9 133 36.1


User provided reference genes

Program Settings