Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05766 Brassica carinata HOM05D004088 ORTHO05D004736 0.0e+00 1127.5 711 100.0
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 6.8e-288 993.8 818 75.4
C03p22460 Brassica napus HOM05D004088 ORTHO05D004736 5.7e-287 990.7 817 82.1
A03p19270 Brassica napus HOM05D004088 ORTHO05D004736 2.3e-264 915.6 819 74.5
BraA03t11181Z Brassica rapa HOM05D004088 ORTHO05D004736 3.1e-264 915.2 819 75.1
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 2.2e-198 696.4 834 57.2
Thhalv10017542m.g Eutrema salsugineum HOM05D004088 ORTHO05D004736 3.1e-192 676.0 745 57.7
Carub.0004s1642 Capsella rubella HOM05D004088 ORTHO05D004736 4.4e-178 629.0 826 51.8
AT2G34730 Arabidopsis thaliana HOM05D004088 ORTHO05D004736 1.3e-177 627.5 823 53.2
CARHR128890 Cardamine hirsuta HOM05D004088 ORTHO05D004736 1.7e-177 627.1 822 53.5
AL4G30720 Arabidopsis lyrata HOM05D004088 ORTHO05D004736 3.5e-175 619.4 832 56.0
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.4e-139 501.1 828 46.5
THA.LOC104814348 Tarenaya hassleriana HOM05D004088 ORTHO05D004736 4.3e-101 373.2 877 37.9
Aa31LG6G11780 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.1e-64 252.3 542 37.6
Sp1g26400 Schrenkiella parvula HOM05D004088 ORTHO05D004736 1.4e-62 245.4 603 34.5
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 5.5e-56 223.4 638 30.1
Duzib235G1173 Durio zibethinus HOM05D004088 ORTHO05D004736 3.6e-55 220.7 642 30.4
Gohir.D10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 6.8e-54 216.5 650 29.5
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 8.8e-54 216.1 765 32.8
QL05p062418 Quercus lobata HOM05D004088 ORTHO05D004736 2.0e-53 214.9 664 31.2
Cfa000808 Carpinus fangiana HOM05D004088 ORTHO05D004736 2.2e-52 211.5 852 27.6
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 9.1e-51 206.1 763 32.1
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 1.6e-50 205.3 748 32.6
Gorai.011G004700 Gossypium raimondii HOM05D004088 ORTHO05D004736 5.5e-48 196.8 640 31.4
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 1.6e-47 195.3 639 29.0
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 3.0e-46 191.0 654 27.5
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 4.0e-46 190.7 698 27.1
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 1.5e-45 188.7 798 26.8
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 1.5e-45 188.7 656 27.9
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 2.0e-45 188.3 589 32.3
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 2.2e-44 184.9 589 32.1
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 2.2e-44 184.9 589 32.1
Manes.06G068100 Manihot esculenta HOM05D004088 ORTHO05D004736 2.2e-44 184.9 632 28.8
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 1.1e-43 182.6 676 27.8
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 1.8e-43 181.8 671 29.4
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 2.4e-43 181.4 660 28.5
COL.COLO4_26840 Corchorus olitorius HOM05D004088 ORTHO05D004736 2.4e-43 181.4 648 28.4
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 5.4e-43 180.3 749 32.6
Duzib192G0456 Durio zibethinus HOM05D004088 ORTHO05D004736 9.2e-43 179.5 626 28.9
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 1.6e-42 178.7 816 29.3
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 1.6e-42 178.7 816 29.3
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 2.0e-42 178.3 699 27.8
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 1.3e-41 175.6 507 34.1
CiPaw.09G141900 Carya illinoinensis HOM05D004088 ORTHO05D004736 2.3e-41 174.9 710 26.8
A09p35910 Brassica napus HOM05D004088 ORTHO05D004736 1.5e-40 172.2 630 30.2
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 4.3e-40 170.6 676 26.6
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 1.6e-39 168.7 850 26.5
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 2.8e-39 167.9 672 28.0
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 2.3e-38 164.9 729 25.5
Nitab4.5_0001583g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 3.0e-38 164.5 664 27.1
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 8.9e-38 162.9 703 26.7
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 1.5e-37 162.2 630 26.8
Glyma.15G130600 Glycine max HOM05D004088 ORTHO05D004736 2.6e-37 161.4 633 27.3
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 5.7e-37 160.2 735 26.3
FAN16G0404 Fragaria x ananassa HOM05D004088 ORTHO05D004736 7.5e-37 159.8 686 26.4
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 1.7e-36 158.7 664 26.2
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 1.7e-36 158.7 615 29.3
Medtr2g030300 Medicago truncatula HOM05D004088 ORTHO05D004736 3.7e-36 157.5 634 26.7
FAN11G0925 Fragaria x ananassa HOM05D004088 ORTHO05D004736 8.3e-36 156.4 682 26.4
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 1.1e-35 156.0 730 26.4
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 2.4e-35 154.8 659 26.3
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 5.4e-35 153.7 640 26.1
FvH4_3g10170 Fragaria vesca HOM05D004088 ORTHO05D004736 1.2e-34 152.5 697 26.0
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 1.2e-34 152.5 640 28.4
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 1.2e-34 152.5 730 25.9
Lalb_Chr18g0058001 Lupinus albus HOM05D004088 ORTHO05D004736 1.6e-34 152.1 641 27.3
CAN.G79.31 Capsicum annuum HOM05D004088 ORTHO05D004736 4.6e-34 150.6 646 26.3
Oeu060307.1 Olea europaea HOM05D004088 ORTHO05D004736 5.9e-34 150.2 734 25.1
Dinv10790 Davidia involucrata HOM05D004088 ORTHO05D004736 7.8e-34 149.8 519 29.1
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 3.0e-33 147.9 618 27.2
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 3.0e-33 147.9 709 26.1
TAR629G1981 Trochodendron aralioides HOM05D004088 ORTHO05D004736 5.0e-33 147.1 656 25.6
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 6.6e-33 146.7 742 24.4
Rhsim13G0121800 Rhododendron simsii HOM05D004088 ORTHO05D004736 1.1e-32 146.0 844 23.3
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 1.5e-32 145.6 712 26.5
vmacro03381 Vaccinium macrocarpon HOM05D004088 ORTHO05D004736 1.5e-32 145.6 582 25.4
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 3.3e-32 144.4 729 25.0
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 4.3e-32 144.1 694 25.5
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 2.1e-31 141.7 712 24.9
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 6.2e-31 140.2 731 25.0
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 6.2e-31 140.2 847 23.5
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 1.8e-30 138.7 710 27.9
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 3.1e-30 137.9 706 24.9
Sed0022554 Sechium edule HOM05D004088 ORTHO05D004736 6.8e-30 136.7 673 26.4
Solyc02g024000.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 8.9e-30 136.3 683 24.5
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 1.2e-29 136.0 636 25.5
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 2.6e-29 134.8 699 24.3
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 4.4e-29 134.0 592 25.8
Aqoxy1G01578 Aquilegia oxysepala HOM05D004088 ORTHO05D004736 7.5e-29 133.3 717 26.4
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 4.9e-28 130.6 675 24.0
Nitab4.5_0001225g0110 Nicotiana tabacum HOM05D004088 ORTHO05D004736 8.3e-28 129.8 620 25.8
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 1.1e-27 129.4 640 25.8
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 1.1e-27 129.4 639 24.9
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 1.4e-27 129.0 685 25.1
Lsat_1_v5_gn_2_8701 Lactuca sativa HOM05D004088 ORTHO05D004736 1.9e-27 128.6 595 25.7
Cpa.g.sc1123.1 Carica papaya HOM05D004088 ORTHO05D004736 4.1e-27 127.5 499 27.7
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 5.4e-27 127.1 648 25.2
Ah.14g086140 Amaranthus hybridus HOM05D002312 ORTHO05D006455 1.2e-26 125.9 628 23.7
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 1.2e-26 125.9 743 24.8
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 1.6e-26 125.6 728 25.0
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 2.0e-26 125.2 600 27.2
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 1.3e-25 122.5 750 23.7
AUR62035797 Chenopodium quinoa HOM05D004088 ORTHO05D004736 1.7e-25 122.1 601 26.0
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 2.3e-25 121.7 646 25.1
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.9e-24 118.6 682 23.5
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 5.6e-24 117.1 658 23.9
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 9.5e-24 116.3 726 24.2
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 3.6e-23 114.4 589 23.4
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 3.6e-23 114.4 795 23.1
Oeu058484.1 Olea europaea HOM05D004088 ORTHO05D004736 8.1e-23 113.2 709 25.2
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.1e-22 112.8 677 23.3
Prupe.6G066700 Prunus persica HOM05D004088 ORTHO05D004736 1.2e-21 109.4 657 24.8
ECA238G4729 Erigeron canadensis HOM05D004088 ORTHO05D004736 1.1e-19 102.8 598 23.1
EL10Ac8g19551 Beta vulgaris HOM05D004088 ORTHO05D004736 5.4e-19 100.5 597 24.8
RcHm_v2.0_Chr5g0016261 Rosa chinensis HOM05D004088 ORTHO05D004736 2.1e-18 98.6 460 25.7
MSTRG.13273 Avicennia marina HOM05D004088 ORTHO05D004736 4.6e-18 97.4 776 22.3
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 6.0e-18 97.1 716 23.9
Prupe.6G009000 Prunus persica HOM05D004088 ORTHO05D004736 1.1e-16 92.8 430 26.7
TAR627G0400 Trochodendron aralioides HOM05D004088 ORTHO05D004736 1.2e-15 89.4 562 24.9
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 2.1e-15 88.6 515 24.7
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 7.6e-13 80.1 814 22.1
A09p21730 Brassica napus HOM05D004950 ORTHO05D004838 2.2e-12 78.6 44 79.5
Eucgr.E02499 Eucalyptus grandis HOM05D004088 ORTHO05D004736 2.2e-12 78.6 661 24.5
BraA09t37775Z Brassica rapa HOM05D004950 ORTHO05D004838 1.4e-11 75.9 44 77.3
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 1.7e-09 68.9 680 19.1
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 3.9e-09 67.8 371 21.8
MBI02_g16954_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 3.9e-09 67.8 363 22.6
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 1.1e-08 66.2 669 22.7
Nitab4.5_0002819g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 7.3e-08 63.5 239 25.5
HPP92_017711 Vanilla planifolia HOM05D004088 ORTHO05D004736 1.2e-07 62.8 653 19.9
ATR0165G056 Amborella trichopoda HOM05D004088 ORTHO05D004736 8.1e-07 60.1 651 21.8
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 8.1e-07 60.1 779 25.2
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 2.4e-06 58.5 671 21.3
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 3.1e-06 58.2 137 29.9
BcaC05g27073 Brassica carinata HOM05D000169 ORTHO05D007693 6.9e-06 57.0 102 41.2


User provided reference genes

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