Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 2.5e-33 145.2 94 100.0
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 2.5e-33 145.2 94 100.0
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 7.4e-33 143.7 94 98.9
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 2.1e-32 142.1 94 97.9
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 2.1e-32 142.1 94 97.9
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 2.8e-24 115.2 92 85.9
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 2.1e-19 99.0 86 76.7
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 3.5e-19 98.2 100 72.0
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 4.6e-19 97.8 86 75.6
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 4.6e-19 97.8 98 63.3
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 1.0e-18 96.7 89 70.8
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 1.3e-18 96.3 98 67.3
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.8e-18 95.9 92 62.0
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.6e-16 89.4 91 60.4
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 8.2e-16 87.0 84 69.0
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 2.0e-14 82.4 77 63.6
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 2.5e-12 75.5 74 54.1
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 2.1e-11 72.4 74 55.4
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 4.6e-11 71.2 74 54.1
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 4.6e-11 71.2 74 54.1
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 4.6e-11 71.2 74 54.1
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 4.6e-11 71.2 74 54.1
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 4.6e-11 71.2 74 54.1
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 4.6e-11 71.2 74 54.1
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 4.6e-11 71.2 74 54.1
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 4.6e-11 71.2 89 48.3
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 6.1e-11 70.9 80 52.5
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 6.1e-11 70.9 80 52.5
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 6.1e-11 70.9 89 48.3
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 7.9e-11 70.5 74 52.7
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 7.9e-11 70.5 74 52.7
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 7.9e-11 70.5 74 52.7
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 7.9e-11 70.5 74 52.7
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 1.0e-10 70.1 74 52.7
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 1.0e-10 70.1 76 51.3
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 1.4e-10 69.7 74 55.4
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 2.3e-10 68.9 76 52.6
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 2.3e-10 68.9 81 48.1
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 3.0e-10 68.6 76 60.5
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 3.9e-10 68.2 77 49.4
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 3.9e-10 68.2 76 51.3
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 6.7e-10 67.4 79 51.9
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 6.7e-10 67.4 68 55.9
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 8.8e-10 67.0 71 54.9
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 1.1e-09 66.6 81 46.9
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 1.1e-09 66.6 81 49.4
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 1.5e-09 66.2 85 47.1
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.5e-09 66.2 72 51.4
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 2.0e-09 65.9 76 53.9
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 3.3e-09 65.1 39 87.2
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 3.3e-09 65.1 71 50.7
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 3.3e-09 65.1 78 51.3
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 7.4e-09 63.9 71 52.1
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 7.4e-09 63.9 78 50.0
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 1.3e-08 63.2 69 55.1
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 1.3e-08 63.2 77 49.4
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 1.3e-08 63.2 68 54.4
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 1.7e-08 62.8 81 46.9
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 1.7e-08 62.8 69 49.3
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 2.2e-08 62.4 75 48.0
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 2.8e-08 62.0 77 50.6
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 2.8e-08 62.0 69 50.7
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 1.1e-07 60.1 78 48.7
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 1.1e-07 60.1 69 52.2
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 4.1e-07 58.2 98 39.8
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.1e-07 58.2 98 39.8
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 5.3e-07 57.8 103 38.8
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 5.3e-07 57.8 75 49.3
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 6.9e-07 57.4 77 48.1
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 6.9e-07 57.4 82 42.7
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 6.9e-07 57.4 80 46.2
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 6.9e-07 57.4 83 42.2
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 6.9e-07 57.4 91 39.6
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 9.1e-07 57.0 78 46.2
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 9.1e-07 57.0 91 39.6
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 9.1e-07 57.0 91 39.6
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 9.1e-07 57.0 81 43.2
Thhalv10017703m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.2e-06 56.6 37 78.4
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 1.5e-06 56.2 91 39.6
FAN02G2823 Fragaria x ananassa HOM05D005113 ORTHO05D006045 2.0e-06 55.8 92 40.2
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 2.0e-06 55.8 85 43.5
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 2.6e-06 55.5 69 46.4
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 4.5e-06 54.7 69 46.4
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 5.9e-06 54.3 90 41.1
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 5.9e-06 54.3 78 43.6
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 7.7e-06 53.9 74 39.2


User provided reference genes

Program Settings