Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 2.5e-86 322.0 153 100.0
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 1.7e-79 299.3 190 78.9
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 3.6e-77 291.6 190 76.8
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 4.1e-57 224.9 169 71.0
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 1.2e-56 223.4 173 69.4
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 2.8e-50 202.2 157 68.8
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 1.7e-39 166.4 148 61.5
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 1.2e-37 160.2 178 52.2
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 1.0e-36 157.1 178 52.2
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 1.4e-36 156.8 178 51.7
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 2.3e-36 156.0 164 54.3
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 9.2e-33 144.1 166 51.2
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 2.0e-32 142.9 184 47.8
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 2.7e-32 142.5 171 46.8
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 2.7e-32 142.5 162 49.4
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 3.5e-32 142.1 162 49.4
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 7.8e-32 141.0 163 50.3
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 7.8e-32 141.0 163 50.3
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 1.3e-31 140.2 162 48.8
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 1.3e-31 140.2 163 49.7
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 6.6e-31 137.9 185 47.6
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 4.7e-29 131.7 173 50.3
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 8.0e-29 131.0 173 47.4
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 5.8e-27 124.8 162 47.5
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 5.8e-27 124.8 176 46.6
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 2.0e-24 116.3 175 41.7
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.0e-23 114.0 155 43.2
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 5.0e-23 111.7 129 48.8
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 5.0e-23 111.7 129 48.8
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.1e-21 106.3 183 40.4
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 8.1e-21 104.4 137 46.7
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 1.8e-20 103.2 162 40.7
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 5.2e-20 101.7 129 45.7
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 6.8e-20 101.3 165 41.8
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 4.4e-19 98.6 129 45.0
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.4e-17 93.6 165 38.8
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 2.4e-17 92.8 141 43.3
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 1.6e-16 90.1 157 36.9
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 7.8e-16 87.8 151 36.4
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 5.1e-15 85.1 137 43.1
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 6.6e-15 84.7 117 43.6
CARHR099610 Cardamine hirsuta HOM05D008029 ORTHO05D003588 1.1e-14 84.0 88 54.5
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 1.1e-14 84.0 166 34.3
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 3.3e-14 82.4 150 33.3
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 7.3e-14 81.3 147 38.1
Potri.010G144900 Populus trichocarpa HOM05D008029 ORTHO05D003588 9.5e-14 80.9 139 38.8
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 4.7e-13 78.6 151 36.4
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 6.2e-13 78.2 147 38.1
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 1.1e-12 77.4 158 34.2
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 3.1e-12 75.9 154 37.7
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 4.0e-12 75.5 136 33.8
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 5.2e-12 75.1 154 37.7
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 5.2e-12 75.1 157 36.9
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 6.8e-12 74.7 145 33.1
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 8.9e-12 74.3 136 36.0
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 1.5e-11 73.6 163 31.9
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 2.0e-11 73.2 149 32.2
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.0e-11 73.2 150 34.7
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 2.6e-11 72.8 137 38.0
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 2.6e-11 72.8 137 38.0
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 2.6e-11 72.8 149 32.2
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 2.6e-11 72.8 158 32.3
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 3.4e-11 72.4 137 38.7
DCAR_026995 Daucus carota HOM05D000862 ORTHO05D003588 3.4e-11 72.4 162 34.0
AT2G43745 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 4.4e-11 72.0 83 51.8
CAN.G575.17 Capsicum annuum HOM05D000966 ORTHO05D002384 4.4e-11 72.0 155 30.3
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 5.8e-11 71.6 137 38.7
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 7.6e-11 71.2 137 38.0
Sc13g0005910 Simmondsia chinensis HOM05D000862 ORTHO05D003588 9.9e-11 70.9 141 34.8
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 1.7e-10 70.1 136 34.6
CARHR099620 Cardamine hirsuta HOM05D008029 ORTHO05D003588 1.7e-10 70.1 69 56.5
PGSC0003DMG400006100 Solanum tuberosum HOM05D000862 ORTHO05D003588 2.2e-10 69.7 155 31.0
THA.LOC104800920 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 2.2e-10 69.7 169 32.0
THA.LOC104800921 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 2.2e-10 69.7 183 33.3
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.2e-10 69.7 160 35.6
TAR636G1580 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.2e-10 69.7 150 34.0
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.2e-10 69.7 154 33.8
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 2.9e-10 69.3 137 33.6
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 2.9e-10 69.3 143 35.0
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.8e-10 68.9 136 33.8
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.8e-10 68.9 140 35.7
DCAR_003013 Daucus carota HOM05D000862 ORTHO05D003588 6.4e-10 68.2 150 33.3
TAR636G3530 Trochodendron aralioides HOM05D000862 ORTHO05D003588 6.4e-10 68.2 140 35.0
TAR636G2528 Trochodendron aralioides HOM05D000862 ORTHO05D003588 8.4e-10 67.8 150 32.7
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 1.1e-09 67.4 148 33.8
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 1.1e-09 67.4 177 32.2
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 1.1e-09 67.4 177 32.2
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.1e-09 67.4 143 29.4
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 2.4e-09 66.2 163 30.1
Nitab4.5_0001124g0040 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.2e-09 65.9 141 32.6
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 4.1e-09 65.5 136 33.1
EL10Ac3g05502 Beta vulgaris HOM05D008029 ORTHO05D003588 5.4e-09 65.1 146 28.8
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 7.1e-09 64.7 154 33.8
BcaC02g12367 Brassica carinata HOM05D008029 ORTHO05D003588 9.2e-09 64.3 118 41.5
C04p04700 Brassica napus HOM05D008029 ORTHO05D003588 9.2e-09 64.3 118 41.5
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.5e-08 62.4 168 30.4
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 3.5e-08 62.4 168 30.4
Aa31LG1G25460 Aethionema arabicum HOM05D000402 ORTHO05D000263 6.0e-08 61.6 82 45.1
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 6.0e-08 61.6 115 37.4
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.0e-07 60.8 159 31.4
Nitab4.5_0001787g0050 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.3e-07 60.5 156 30.1
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.3e-07 60.5 147 31.3
TAR636G0883 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.3e-07 60.5 154 32.5
Thhalv10023105m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.7e-07 60.1 71 49.3
EL10Ac3g05501 Beta vulgaris HOM05D008029 ORTHO05D003588 2.3e-07 59.7 147 29.9
Thhalv10008892m.g Eutrema salsugineum HOM05D000862 ORTHO05D003588 2.3e-07 59.7 156 30.8
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 3.9e-07 58.9 150 34.0
Solyc09g083020.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 1.5e-06 57.0 150 28.7
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.9e-06 56.6 155 31.0
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 2.5e-06 56.2 157 30.6
AT1G05760 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 3.3e-06 55.8 156 28.8
PGSC0003DMG400040105 Solanum tuberosum HOM05D000862 ORTHO05D003588 4.3e-06 55.5 157 30.6
TAR636G1603 Trochodendron aralioides HOM05D000862 ORTHO05D003588 4.3e-06 55.5 133 31.6
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 5.6e-06 55.1 92 37.0
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 9.6e-06 54.3 68 47.1
DCAR_026997 Daucus carota HOM05D000862 ORTHO05D003588 9.6e-06 54.3 141 31.2
TAR636G0362 Trochodendron aralioides HOM05D000862 ORTHO05D003588 9.6e-06 54.3 134 32.1


User provided reference genes

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