Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04777 Brassica carinata HOM05D006768 ORTHO05D008436 1.0e-49 199.9 113 100.0
BolC3t15699H Brassica oleracea HOM05D006768 ORTHO05D008436 1.0e-49 199.9 113 100.0
BraA03t12013Z Brassica rapa HOM05D006768 ORTHO05D008436 2.6e-48 195.3 114 99.1
Sp6g09840 Schrenkiella parvula HOM05D006768 ORTHO05D008436 7.5e-48 193.7 115 97.4
BcaB01g02871 Brassica carinata HOM05D006768 ORTHO05D008436 2.2e-47 192.2 113 89.4
A03p28000 Brassica napus HOM05D006768 ORTHO05D008436 5.3e-46 187.6 107 100.0
C03p33820 Brassica napus HOM05D006768 ORTHO05D008436 5.3e-46 187.6 107 100.0
Thhalv10029535m.g Eutrema salsugineum HOM05D006768 ORTHO05D008436 2.2e-44 182.2 113 88.5
AL6G41870 Arabidopsis lyrata HOM05D006768 ORTHO05D008436 8.8e-41 170.2 113 90.3
CARHR259330 Cardamine hirsuta HOM05D006768 ORTHO05D008436 2.0e-40 169.1 113 88.5
Carub.0006s2676 Capsella rubella HOM05D006768 ORTHO05D008436 2.8e-39 165.2 114 87.7
AT4G08230 Arabidopsis thaliana HOM05D006768 ORTHO05D008436 6.3e-39 164.1 114 87.7
THA.LOC104817125 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 7.0e-38 160.6 113 83.2
arahy.Tifrunner.gnm1.ann1.BFT67J Arachis hypogaea HOM05D006768 ORTHO05D008436 5.9e-37 157.5 113 77.0
arahy.Tifrunner.gnm1.ann1.V4QE5E Arachis hypogaea HOM05D006768 ORTHO05D008436 5.9e-37 157.5 113 77.0
Hund27041 Selenicereus undatus HOM05D006768 ORTHO05D008436 1.0e-36 156.8 112 75.9
Lalb_Chr04g0253331 Lupinus albus HOM05D006768 ORTHO05D008436 1.5e-35 152.9 113 77.9
EL10Ac1g00013 Beta vulgaris HOM05D006768 ORTHO05D008436 3.6e-34 148.3 112 67.0
AUR62004718 Chenopodium quinoa HOM05D006768 ORTHO05D008436 4.7e-34 147.9 113 75.2
CANSAT25G0473 Cannabis sativa HOM05D006768 ORTHO05D008436 2.0e-32 142.5 113 77.9
Ciclev10002911m.g Citrus clementina HOM05D006768 ORTHO05D008436 5.7e-32 141.0 120 63.3
Solyc11g013100.2 Solanum lycopersicum HOM05D006768 ORTHO05D008436 5.7e-32 141.0 113 69.0
Sopen11g008160 Solanum pennellii HOM05D006768 ORTHO05D008436 5.7e-32 141.0 113 69.0
Lj1g0025240 Lotus japonicus HOM05D006768 ORTHO05D008436 7.5e-32 140.6 116 74.1
CiPaw.06G026900 Carya illinoinensis HOM05D006768 ORTHO05D008436 1.3e-31 139.8 113 69.9
COL.COLO4_38328 Corchorus olitorius HOM05D006768 ORTHO05D008436 1.7e-31 139.4 113 71.7
PGSC0003DMG400014092 Solanum tuberosum HOM05D006768 ORTHO05D008436 1.7e-31 139.4 113 68.1
Nitab4.5_0010364g0020 Nicotiana tabacum HOM05D006768 ORTHO05D008436 2.2e-31 139.0 113 69.9
Phvul.008G165800 Phaseolus vulgaris HOM05D006768 ORTHO05D008436 4.9e-31 137.9 114 75.4
CAN.G342.8 Capsicum annuum HOM05D006768 ORTHO05D008436 6.3e-31 137.5 113 67.3
Psat2g079320 Pisum sativum HOM05D006768 ORTHO05D008436 6.3e-31 137.5 113 71.7
Atru.chr13.1393 Acer truncatum HOM05D006768 ORTHO05D008436 1.4e-30 136.3 107 72.0
CAN.G2.37 Capsicum annuum HOM05D006768 ORTHO05D008436 3.1e-30 135.2 113 66.4
THA.LOC104806813 Tarenaya hassleriana HOM05D006768 ORTHO05D008436 3.1e-30 135.2 113 75.2
Migut.C01157 Erythranthe guttata HOM05D006768 ORTHO05D008436 4.1e-30 134.8 113 72.6
Gohir.A05G233000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 4.1e-30 134.8 112 69.6
FvH4_2g26460 Fragaria vesca HOM05D006768 ORTHO05D008436 5.4e-30 134.4 113 64.6
Medtr5g059100 Medicago truncatula HOM05D006768 ORTHO05D008436 5.4e-30 134.4 107 75.7
Potri.002G086600 Populus trichocarpa HOM05D006768 ORTHO05D008436 5.4e-30 134.4 113 67.3
RcHm_v2.0_Chr6g0295131 Rosa chinensis HOM05D006768 ORTHO05D008436 5.4e-30 134.4 113 64.6
TWI56G0584 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 5.4e-30 134.4 122 58.2
Glyma.14G163200 Glycine max HOM05D006768 ORTHO05D008436 7.0e-30 134.0 113 75.2
CSS0001196 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 9.2e-30 133.7 113 72.6
MELO3C011580.2 Cucumis melo HOM05D006768 ORTHO05D008436 9.2e-30 133.7 114 64.9
ClCG08G005390 Citrullus lanatus HOM05D006768 ORTHO05D008436 1.2e-29 133.3 114 64.9
FAN24G3387 Fragaria x ananassa HOM05D006768 ORTHO05D008436 1.2e-29 133.3 113 71.7
Hma1.2p1_0009F.1_g006320 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 1.2e-29 133.3 116 59.5
Glyma.13G082200 Glycine max HOM05D006768 ORTHO05D008436 1.6e-29 132.9 113 74.3
TPR.G8510 Trifolium pratense HOM05D006768 ORTHO05D008436 1.6e-29 132.9 113 67.3
Potri.005G174700 Populus trichocarpa HOM05D006768 ORTHO05D008436 2.0e-29 132.5 113 66.4
PGR044G1209 Punica granatum HOM05D006768 ORTHO05D008436 2.0e-29 132.5 118 60.2
Gohir.D02G081200 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.7e-29 132.1 112 62.5
Lsat_1_v5_gn_4_25061 Lactuca sativa HOM05D006768 ORTHO05D008436 2.7e-29 132.1 112 72.3
Cpa.g.sc36.24 Carica papaya HOM05D006768 ORTHO05D008436 4.5e-29 131.3 112 67.0
Manes.18G074850 Manihot esculenta HOM05D006768 ORTHO05D008436 4.5e-29 131.3 113 62.8
Thecc.08G120600 Theobroma cacao HOM05D006768 ORTHO05D008436 4.5e-29 131.3 112 68.8
unitig_21.g20584 Utricularia gibba HOM05D006768 ORTHO05D008436 4.5e-29 131.3 112 67.0
Gohir.D05G235400 Gossypium hirsutum HOM05D006768 ORTHO05D008436 5.9e-29 131.0 112 64.3
Manes.02G160800 Manihot esculenta HOM05D006768 ORTHO05D008436 1.0e-28 130.2 113 63.7
MSTRG.25394 Avicennia marina HOM05D006768 ORTHO05D008436 1.3e-28 129.8 112 64.3
Duzib116G0009 Durio zibethinus HOM05D006768 ORTHO05D008436 1.3e-28 129.8 112 63.4
VMungo0647G1658 Vigna mungo HOM05D006768 ORTHO05D008436 1.7e-28 129.4 107 78.5
Duzib041G0323 Durio zibethinus HOM05D006768 ORTHO05D008436 2.3e-28 129.0 112 67.9
Sed0001868 Sechium edule HOM05D006768 ORTHO05D008436 2.3e-28 129.0 116 58.6
Gohir.A02G074000 Gossypium hirsutum HOM05D006768 ORTHO05D008436 2.9e-28 128.6 112 67.0
Aqoxy6G00156 Aquilegia oxysepala HOM05D006768 ORTHO05D008436 3.8e-28 128.3 112 63.4
Gorai.005G090800 Gossypium raimondii HOM05D006768 ORTHO05D008436 3.8e-28 128.3 112 63.4
Nitab4.5_0005357g0030 Nicotiana tabacum HOM05D006768 ORTHO05D008436 3.8e-28 128.3 107 68.2
Cc10_g11060 Coffea canephora HOM05D006768 ORTHO05D008436 6.6e-28 127.5 107 70.1
HanXRQChr16g0527071 Helianthus annuus HOM05D006768 ORTHO05D008436 8.6e-28 127.1 112 67.0
Prupe.1G502600 Prunus persica HOM05D006768 ORTHO05D008436 8.6e-28 127.1 113 69.0
PSO170G4432 Papaver somniferum HOM05D006768 ORTHO05D008436 1.1e-27 126.7 113 68.1
PSO528G0064 Papaver somniferum HOM05D006768 ORTHO05D008436 1.1e-27 126.7 113 68.1
CSS0006116 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 3.3e-27 125.2 113 61.9
FAN15G1404 Fragaria x ananassa HOM05D006768 ORTHO05D008436 3.3e-27 125.2 107 63.6
ECA233G5727 Erigeron canadensis HOM05D006768 ORTHO05D008436 4.3e-27 124.8 112 66.1
ECA234G1078 Erigeron canadensis HOM05D006768 ORTHO05D008436 4.3e-27 124.8 112 69.6
SalBow7G0914 Salvia bowleyana HOM05D006768 ORTHO05D008436 4.3e-27 124.8 106 65.1
SalBow7G4665 Salvia bowleyana HOM05D006768 ORTHO05D008436 4.3e-27 124.8 106 65.1
TWI12G0503 Tripterygium wilfordii HOM05D006768 ORTHO05D008436 4.3e-27 124.8 113 71.7
Sc23g0000800 Simmondsia chinensis HOM05D006768 ORTHO05D008436 9.5e-27 123.6 102 71.6
CsaV3_6G003570 Cucumis sativus L. HOM05D006768 ORTHO05D008436 1.2e-26 123.2 108 63.0
HanXRQChr08g0223691 Helianthus annuus HOM05D006768 ORTHO05D008436 1.2e-26 123.2 113 65.5
Hma1.2p1_0073F.1_g038410 Hydrangea macrophylla HOM05D006768 ORTHO05D008436 8.0e-26 120.6 112 63.4
Os03g0263700 Oryza sativa ssp. japonica HOM05D006768 ORTHO05D008436 1.8e-25 119.4 113 64.6
Dinv27347 Davidia involucrata HOM05D006768 ORTHO05D008436 3.0e-25 118.6 110 56.4
GSVIVG01008909001 Vitis vinifera HOM05D006768 ORTHO05D008436 3.0e-25 118.6 110 56.4
QL09p036660 Quercus lobata HOM05D006768 ORTHO05D008436 4.0e-25 118.2 112 66.1
HPP92_011177 Vanilla planifolia HOM05D006768 ORTHO05D008436 6.8e-25 117.5 112 65.2
RhsimUnG0095400 Rhododendron simsii HOM05D006768 ORTHO05D008436 2.0e-24 115.9 109 56.0
TAR625G0411 Trochodendron aralioides HOM05D006768 ORTHO05D008436 2.0e-24 115.9 112 61.6
Gorai.009G243700 Gossypium raimondii HOM05D006768 ORTHO05D008436 3.4e-24 115.2 107 59.8
Sabra02G0068000 Salix brachista HOM05D006768 ORTHO05D008436 4.4e-24 114.8 107 62.6
Aa31LG9G14330 Aethionema arabicum HOM05D006768 ORTHO05D008436 2.9e-23 112.1 87 86.2
MD08G1168400 Malus domestica HOM05D006768 ORTHO05D008436 6.4e-23 110.9 95 70.5
Zm00001eb011610 Zea mays HOM05D006768 ORTHO05D008436 6.4e-23 110.9 113 64.6
Zm00001eb398080 Zea mays HOM05D006768 ORTHO05D008436 8.3e-23 110.5 113 60.2
MBI06_g02573_MAGBIO Magnolia biondii HOM05D006768 ORTHO05D008436 2.4e-22 109.0 105 52.4
vmacro00812 Vaccinium macrocarpon HOM05D006768 ORTHO05D008436 3.2e-22 108.6 108 58.3
SGA_v2.0_scaffold24G10479 Striga asiatica HOM05D006768 ORTHO05D008436 7.0e-22 107.5 113 48.7
TAR376G1039 Trochodendron aralioides HOM05D000018 ORTHO05D001920 1.2e-21 106.7 102 56.9
CDE08G1444 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 5.9e-21 104.4 112 66.1
Haze_00489 Corylus avellana HOM05D006768 ORTHO05D008436 5.9e-21 104.4 89 66.3
Ca_28007_v3 Cicer arietinum L. HOM05D006768 ORTHO05D008436 1.7e-20 102.8 82 80.5
CDE04G1345 Ceratophyllum demersum HOM05D006768 ORTHO05D008436 5.0e-20 101.3 112 56.2
FAN20G0213 Fragaria x ananassa HOM05D000048 ORTHO05D004674 5.0e-20 101.3 100 57.0
Sabra05G0131800 Salix brachista HOM05D006768 ORTHO05D008436 8.6e-20 100.5 96 61.5
AUR62023633 Chenopodium quinoa HOM05D006768 ORTHO05D008436 5.6e-19 97.8 75 77.3
FAN27G1871 Fragaria x ananassa HOM05D000048 ORTHO05D004674 1.2e-18 96.7 57 80.7
Eucgr.F04346 Eucalyptus grandis HOM05D006768 ORTHO05D008436 2.3e-17 92.4 88 63.6
CSS0018251 Camellia sinensis var. sinensis HOM05D006768 ORTHO05D008436 4.0e-17 91.7 90 65.6
SEGI_37020 Sequoiadendron giganteum HOM05D006768 ORTHO05D008436 1.5e-16 89.7 112 55.4
Peaxi162Scf00000g61010 Petunia axillaris HOM05D006768 ORTHO05D008436 2.4e-14 82.4 75 65.3
Mapoly0043s0020 Marchantia polymorpha HOM05D006768 ORTHO05D008436 3.3e-11 72.0 118 49.2
Pp3c13_12030 Physcomitrium patens HOM05D006768 ORTHO05D008436 9.5e-11 70.5 111 49.5
AagrBONN_evm.TU.Sc2ySwM_344.1603 Anthoceros agrestis HOM05D006768 ORTHO05D008436 1.2e-08 63.5 102 51.0
Sabra05G0131600 Salix brachista HOM05D006768 ORTHO05D008436 9.9e-08 60.5 62 61.3
SMO308G0024 Selaginella moellendorffii HOM05D006768 ORTHO05D008436 1.3e-07 60.1 113 47.8
Nitab4.5_0001142g0120 Nicotiana tabacum HOM05D006768 ORTHO05D008436 1.7e-07 59.7 105 41.0


User provided reference genes

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