Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04062 Brassica carinata HOM05D006205 ORTHO05D007703 6.0e-216 753.8 361 100.0
A03p37470 Brassica napus HOM05D006205 ORTHO05D007703 5.6e-214 747.3 361 98.9
C03p45470 Brassica napus HOM05D006205 ORTHO05D007703 7.3e-214 746.9 359 99.7
BolC3t16816H Brassica oleracea HOM05D006205 ORTHO05D007703 2.1e-213 745.3 359 99.4
BraA03t12906Z Brassica rapa HOM05D006205 ORTHO05D007703 3.6e-213 744.6 359 99.2
A05p37150 Brassica napus HOM05D006205 ORTHO05D007703 1.4e-204 716.1 361 94.2
C05p55580 Brassica napus HOM05D006205 ORTHO05D007703 1.4e-204 716.1 361 94.2
BolC5t34227H Brassica oleracea HOM05D006205 ORTHO05D007703 1.4e-204 716.1 361 94.2
BraA05t22513Z Brassica rapa HOM05D006205 ORTHO05D007703 1.5e-203 712.6 361 93.9
BcaC05g29277 Brassica carinata HOM05D006205 ORTHO05D007703 2.6e-203 711.8 359 94.4
Sp3g10390 Schrenkiella parvula HOM05D006205 ORTHO05D007703 1.3e-202 709.5 361 93.6
Thhalv10021002m.g Eutrema salsugineum HOM05D006205 ORTHO05D007703 3.0e-199 698.4 362 91.7
AL3G23830 Arabidopsis lyrata HOM05D006205 ORTHO05D007703 2.8e-197 691.8 361 90.9
AT3G12150 Arabidopsis thaliana HOM05D006205 ORTHO05D007703 2.8e-197 691.8 361 91.1
Carub.0003s1152 Capsella rubella HOM05D006205 ORTHO05D007703 1.6e-192 676.0 358 89.7
Aa31LG3G6360 Aethionema arabicum HOM05D006205 ORTHO05D007703 9.9e-187 656.8 390 81.0
THA.LOC104809921 Tarenaya hassleriana HOM05D006205 ORTHO05D007703 8.4e-186 653.7 359 86.4
BcaB04g18694 Brassica carinata HOM05D006205 ORTHO05D007703 1.6e-184 649.4 339 93.5
Glyma.19G144900 Glycine max HOM05D006205 ORTHO05D007703 3.8e-178 628.2 355 83.1
Sabra06G0041700 Salix brachista HOM05D006205 ORTHO05D007703 3.2e-177 625.2 358 82.7
Gorai.002G228500 Gossypium raimondii HOM05D006205 ORTHO05D007703 5.5e-177 624.4 359 81.1
Gohir.A01G194800 Gossypium hirsutum HOM05D006205 ORTHO05D007703 7.1e-177 624.0 359 81.1
Potri.006G058400 Populus trichocarpa HOM05D006205 ORTHO05D007703 7.1e-177 624.0 358 82.4
CiPaw.09G032800 Carya illinoinensis HOM05D006205 ORTHO05D007703 3.5e-176 621.7 359 81.6
Ciclev10031918m.g Citrus clementina HOM05D006205 ORTHO05D007703 3.5e-176 621.7 359 81.3
CSS0013544 Camellia sinensis var. sinensis HOM05D006205 ORTHO05D007703 4.6e-176 621.3 359 81.3
Potri.016G049700 Populus trichocarpa HOM05D006205 ORTHO05D007703 4.6e-176 621.3 358 81.3
Thecc.05G167100 Theobroma cacao HOM05D006205 ORTHO05D007703 4.6e-176 621.3 359 81.3
Manes.09G031300 Manihot esculenta HOM05D006205 ORTHO05D007703 6.0e-176 620.9 359 80.5
PGR142G1368 Punica granatum HOM05D006205 ORTHO05D007703 7.9e-176 620.5 358 81.0
Gohir.D01G185000 Gossypium hirsutum HOM05D006205 ORTHO05D007703 1.3e-175 619.8 359 80.5
Phvul.001G139800 Phaseolus vulgaris HOM05D006205 ORTHO05D007703 3.0e-175 618.6 359 81.1
TAR623G1003 Trochodendron aralioides HOM05D006205 ORTHO05D007703 3.0e-175 618.6 358 81.8
Duzib106G0917 Durio zibethinus HOM05D006205 ORTHO05D007703 3.9e-175 618.2 359 81.1
Sabra16G0053600 Salix brachista HOM05D006205 ORTHO05D007703 8.7e-175 617.1 354 81.6
Ca_08497_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 1.9e-174 615.9 359 80.8
Ca_29722_v3 Cicer arietinum L. HOM05D006205 ORTHO05D007703 1.9e-174 615.9 359 80.8
Prupe.7G072500 Prunus persica HOM05D006205 ORTHO05D007703 2.5e-174 615.5 359 80.2
VMungo1383G0076 Vigna mungo HOM05D006205 ORTHO05D007703 2.5e-174 615.5 359 80.8
Cpa.g.sc85.111 Carica papaya HOM05D006205 ORTHO05D007703 5.7e-174 614.4 359 81.9
TPR.G4691 Trifolium pratense HOM05D006205 ORTHO05D007703 7.4e-174 614.0 359 80.2
Nitab4.5_0006846g0010 Nicotiana tabacum HOM05D006205 ORTHO05D007703 1.3e-173 613.2 359 78.8
Haze_19942 Corylus avellana HOM05D006205 ORTHO05D007703 1.6e-173 612.8 358 80.7
arahy.Tifrunner.gnm1.ann1.ARGW3J Arachis hypogaea HOM05D006205 ORTHO05D007703 2.1e-173 612.5 359 79.9
QL07p022686 Quercus lobata HOM05D006205 ORTHO05D007703 2.1e-173 612.5 359 80.2
Dinv24098 Davidia involucrata HOM05D006205 ORTHO05D007703 2.8e-173 612.1 359 79.9
Eucgr.K01821 Eucalyptus grandis HOM05D006205 ORTHO05D007703 2.8e-173 612.1 359 80.2
arahy.Tifrunner.gnm1.ann1.68EW5P Arachis hypogaea HOM05D006205 ORTHO05D007703 4.8e-173 611.3 359 79.7
Medtr7g092680 Medicago truncatula HOM05D006205 ORTHO05D007703 4.8e-173 611.3 359 79.4
Psat3g069960 Pisum sativum HOM05D006205 ORTHO05D007703 4.8e-173 611.3 355 80.6
Hma1.2p1_1575F.1_g291620 Hydrangea macrophylla HOM05D006205 ORTHO05D007703 6.2e-173 610.9 359 79.1
Lalb_Chr18g0047621 Lupinus albus HOM05D006205 ORTHO05D007703 6.2e-173 610.9 359 80.8
Sed0025317 Sechium edule HOM05D006205 ORTHO05D007703 8.2e-173 610.5 359 79.9
Actinidia17259 Actinidia chinensis HOM05D006205 ORTHO05D007703 1.1e-172 610.1 359 79.7
FvH4_6g22800 Fragaria vesca HOM05D006205 ORTHO05D007703 1.8e-172 609.4 359 80.5
FAN14G5729 Fragaria x ananassa HOM05D006205 ORTHO05D007703 1.8e-172 609.4 359 80.5
FAN02G0014 Fragaria x ananassa HOM05D006205 ORTHO05D007703 4.1e-172 608.2 359 80.2
MSTRG.26097 Avicennia marina HOM05D006205 ORTHO05D007703 9.0e-172 607.1 359 79.4
SGA_v2.0_scaffold94G28443 Striga asiatica HOM05D006205 ORTHO05D007703 1.2e-171 606.7 359 80.2
Lju124A32T75 Lonicera japonica HOM05D006205 ORTHO05D007703 1.5e-171 606.3 359 79.7
Duzib093G1988 Durio zibethinus HOM05D006205 ORTHO05D007703 3.4e-171 605.1 359 78.6
Hund19180 Selenicereus undatus HOM05D006205 ORTHO05D007703 3.4e-171 605.1 359 78.6
DCAR_013564 Daucus carota HOM05D006205 ORTHO05D007703 5.8e-171 604.4 355 79.7
RcHm_v2.0_Chr3g0480421 Rosa chinensis HOM05D006205 ORTHO05D007703 7.6e-171 604.0 359 79.4
Nn2g15532 Nelumbo nucifera HOM05D006205 ORTHO05D007703 1.3e-170 603.2 356 80.3
CAN.G85.9 Capsicum annuum HOM05D006205 ORTHO05D007703 3.8e-170 601.7 359 77.4
FAN05G5560 Fragaria x ananassa HOM05D006205 ORTHO05D007703 3.8e-170 601.7 359 79.7
EL10Ac3g06974 Beta vulgaris HOM05D006205 ORTHO05D007703 6.5e-170 600.9 358 78.5
Lj1g0022121 Lotus japonicus HOM05D006205 ORTHO05D007703 1.9e-169 599.4 393 74.3
Lsat_1_v5_gn_8_79241 Lactuca sativa HOM05D006205 ORTHO05D007703 7.2e-169 597.4 359 77.2
MELO3C009648.2 Cucumis melo HOM05D006205 ORTHO05D007703 2.1e-168 595.9 381 74.8
PGSC0003DMG400012937 Solanum tuberosum HOM05D006205 ORTHO05D007703 2.1e-168 595.9 359 76.6
CANSAT64G2514 Cannabis sativa HOM05D006205 ORTHO05D007703 3.5e-168 595.1 358 78.5
Sc25g0005160 Simmondsia chinensis HOM05D006205 ORTHO05D007703 5.1e-167 591.3 359 76.6
AUR62024356 Chenopodium quinoa HOM05D006205 ORTHO05D007703 8.7e-167 590.5 356 77.8
Migut.K00057 Erythranthe guttata HOM05D006205 ORTHO05D007703 8.7e-167 590.5 359 77.2
SalBow1G2518 Salvia bowleyana HOM05D006205 ORTHO05D007703 8.7e-167 590.5 401 71.8
vmacro09103 Vaccinium macrocarpon HOM05D006205 ORTHO05D007703 1.9e-166 589.3 369 76.2
Cc06_g16310 Coffea canephora HOM05D006205 ORTHO05D007703 4.3e-166 588.2 358 76.3
Sopen03g017680 Solanum pennellii HOM05D006205 ORTHO05D007703 5.7e-166 587.8 359 75.5
HanXRQChr05g0132791 Helianthus annuus HOM05D006205 ORTHO05D007703 7.4e-166 587.4 358 75.1
Aqoxy1G00212 Aquilegia oxysepala HOM05D006205 ORTHO05D007703 9.7e-166 587.0 359 76.6
Solyc03g064030.3 Solanum lycopersicum HOM05D006205 ORTHO05D007703 9.7e-166 587.0 359 75.5
QL93p2022_0017 Quercus lobata HOM05D006205 ORTHO05D007703 2.2e-165 585.9 417 69.1
ClCG10G017350 Citrullus lanatus HOM05D006205 ORTHO05D007703 8.2e-165 583.9 426 67.8
TWI74G1063 Tripterygium wilfordii HOM05D006205 ORTHO05D007703 3.4e-163 578.6 341 79.5
AUR62025960 Chenopodium quinoa HOM05D006205 ORTHO05D007703 7.2e-161 570.9 356 76.1
ATR0605G163 Amborella trichopoda HOM05D006205 ORTHO05D007703 9.4e-161 570.5 358 74.9
CDE10G0043 Ceratophyllum demersum HOM05D006205 ORTHO05D007703 1.2e-160 570.1 358 74.6
PSO384G4504 Papaver somniferum HOM05D006205 ORTHO05D007703 1.2e-160 570.1 358 74.9
PSO339G0108 Papaver somniferum HOM05D006205 ORTHO05D007703 8.8e-159 563.9 360 73.9
unitig_899.g15081 Utricularia gibba HOM05D006205 ORTHO05D007703 1.4e-156 556.6 360 73.6
GSVIVG01033369001 Vitis vinifera HOM05D006205 ORTHO05D007703 1.7e-154 549.7 315 83.2
Zm00001eb236370 Zea mays HOM05D006205 ORTHO05D007703 2.9e-154 548.9 369 70.2
SEGI_33856 Sequoiadendron giganteum HOM05D006205 ORTHO05D007703 1.4e-153 546.6 356 71.3
Os02g0195000 Oryza sativa ssp. japonica HOM05D006205 ORTHO05D007703 1.8e-151 539.7 369 67.8
Mapoly0096s0035 Marchantia polymorpha HOM05D006205 ORTHO05D007703 1.9e-145 519.6 358 68.2
Nitab4.5_0000016g0140 Nicotiana tabacum HOM05D006205 ORTHO05D007703 5.5e-145 518.1 359 69.4
SMO334G0020 Selaginella moellendorffii HOM05D006205 ORTHO05D007703 1.2e-144 516.9 356 68.3
Pp3c3_27370 Physcomitrium patens HOM05D006205 ORTHO05D007703 4.7e-144 515.0 357 68.6
ECA236G0538 Erigeron canadensis HOM05D006205 ORTHO05D007703 4.0e-143 511.9 314 77.7
Cfa016888 Carpinus fangiana HOM05D006205 ORTHO05D007703 2.8e-141 505.8 303 79.5
MD12G1062300 Malus domestica HOM05D006205 ORTHO05D007703 2.9e-138 495.7 307 77.2
AagrBONN_evm.TU.Sc2ySwM_228.3151 Anthoceros agrestis HOM05D006205 ORTHO05D007703 2.5e-137 492.7 357 65.5
Ah.13g076130 Amaranthus hybridus HOM05D006205 ORTHO05D007703 5.2e-135 485.0 346 69.1
Rhsim04G0098500 Rhododendron simsii HOM05D006205 ORTHO05D007703 5.0e-130 468.4 404 59.4
CBR_g25855 Chara braunii HOM05D006205 ORTHO05D007703 2.0e-126 456.4 362 61.0
CsaV3_3G039050 Cucumis sativus L. HOM05D006205 ORTHO05D007703 1.3e-125 453.8 250 85.2
COL.COLO4_36119 Corchorus olitorius HOM05D006205 ORTHO05D007703 2.7e-123 446.0 241 87.1
Peaxi162Scf00285g00443 Petunia axillaris HOM05D006205 ORTHO05D007703 3.5e-123 445.7 359 61.3
SalBow1G2557 Salvia bowleyana HOM05D006205 ORTHO05D007703 5.2e-119 431.8 365 61.9
HPP92_023778 Vanilla planifolia HOM05D006205 ORTHO05D007703 1.1e-113 414.1 239 81.2
CARHR086730 Cardamine hirsuta HOM05D006205 ORTHO05D007703 6.2e-112 408.3 206 94.2
Dinv18116 Davidia involucrata HOM05D006205 ORTHO05D007703 8.9e-95 351.3 208 78.4
Glyma.02G176500 Glycine max HOM05D006205 ORTHO05D007703 6.0e-75 285.4 180 78.9
MBI04_g47239_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 6.3e-56 222.2 153 67.3
MBI04_g14269_MAGBIO Magnolia biondii HOM05D006205 ORTHO05D007703 1.1e-49 201.4 155 63.2
Cre02.g076150 Chlamydomonas reinhardtii HOM05D006205 ORTHO05D007703 1.1e-47 194.9 328 37.5
Actinidia33641 Actinidia chinensis HOM05D006205 ORTHO05D007703 2.6e-46 190.3 120 71.7
MD14G1062900 Malus domestica HOM05D006205 ORTHO05D007703 1.9e-44 184.1 127 68.5
MD14G1062700 Malus domestica HOM05D006205 ORTHO05D007703 3.2e-44 183.3 204 49.5
VMungo1080G0431 Vigna mungo HOM05D006205 ORTHO05D007703 1.3e-37 161.4 98 79.6
arahy.Tifrunner.gnm1.ann1.EV0IJD Arachis hypogaea HOM05D006205 ORTHO05D007703 1.5e-33 147.9 117 64.1
VMungo0331G0486 Vigna mungo HOM05D006205 ORTHO05D007703 2.8e-24 117.1 108 57.4
MD12G1062200 Malus domestica HOM05D006205 ORTHO05D007703 6.3e-24 115.9 56 89.3
BcaC01g04094 Brassica carinata HOM05D001227 ORTHO05D001082 2.1e-19 100.9 162 43.2
Medtr0001s0010 Medicago truncatula HOM05D006205 ORTHO05D007703 2.7e-19 100.5 79 63.3
Rhsim04G0098400 Rhododendron simsii HOM05D000259 ORTHO05D000155 1.6e-14 84.7 39 89.7
Glyma.02G176400 Glycine max HOM05D006205 ORTHO05D007703 3.8e-13 80.1 50 68.0
MCO07G325 Micromonas commoda HOM05D006205 ORTHO05D007703 2.2e-08 64.3 202 29.2


User provided reference genes

Program Settings