Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02459 Brassica carinata HOM05D004667 ORTHO05D005522 2.2e-31 138.3 68 100.0
BolC3t18707H Brassica oleracea HOM05D004667 ORTHO05D005522 3.9e-28 127.5 64 98.4
BcaC01g00891 Brassica carinata HOM05D004667 ORTHO05D005522 8.8e-28 126.3 64 96.9
C08p25720 Brassica napus HOM05D004667 ORTHO05D005522 5.5e-14 80.5 64 70.3
BolC8t50187H Brassica oleracea HOM05D004667 ORTHO05D005522 2.1e-13 78.6 62 69.4
RcHm_v2.0_Chr7g0181001 Rosa chinensis HOM05D004667 ORTHO05D005522 2.3e-12 75.1 52 65.4
BcaB02g10693 Brassica carinata HOM05D004667 ORTHO05D005522 8.8e-12 73.2 43 81.4
FAN08G0134 Fragaria x ananassa HOM05D004667 ORTHO05D005522 8.8e-12 73.2 51 64.7
QL10p016532 Quercus lobata HOM05D004667 ORTHO05D005522 8.8e-12 73.2 55 63.6
Thhalv10010670m.g Eutrema salsugineum HOM05D004667 ORTHO05D005522 1.2e-11 72.8 43 79.1
Prupe.5G190100 Prunus persica HOM05D004667 ORTHO05D005522 2.0e-11 72.0 55 61.8
Eucgr.B00470 Eucalyptus grandis HOM05D004667 ORTHO05D005522 2.6e-11 71.6 55 58.2
PGR083G2477 Punica granatum HOM05D004667 ORTHO05D005522 2.6e-11 71.6 55 60.0
Sp5g14280 Schrenkiella parvula HOM05D004667 ORTHO05D005522 2.6e-11 71.6 43 76.7
Thecc.03G084200 Theobroma cacao HOM05D004667 ORTHO05D005522 2.6e-11 71.6 53 60.4
FvH4_5g15171 Fragaria vesca HOM05D004667 ORTHO05D005522 3.4e-11 71.2 51 62.7
Carub.0005s1377 Capsella rubella HOM05D004667 ORTHO05D005522 4.4e-11 70.9 44 75.0
MD06G1191600 Malus domestica HOM05D004667 ORTHO05D005522 4.4e-11 70.9 55 61.8
AL5G26930 Arabidopsis lyrata HOM05D004667 ORTHO05D005522 7.5e-11 70.1 46 73.9
Lj4g0024645 Lotus japonicus HOM05D004667 ORTHO05D005522 7.5e-11 70.1 57 57.9
BraA03t15338Z Brassica rapa HOM05D004667 ORTHO05D005522 1.3e-10 69.3 64 60.9
AT3G47640 Arabidopsis thaliana HOM05D004667 ORTHO05D005522 1.7e-10 68.9 43 74.4
COL.COLO4_24543 Corchorus olitorius HOM05D004667 ORTHO05D005522 2.8e-10 68.2 53 60.4
Duzib084G1199 Durio zibethinus HOM05D004667 ORTHO05D005522 2.8e-10 68.2 55 56.4
Duzib205G0185 Durio zibethinus HOM05D004667 ORTHO05D005522 3.7e-10 67.8 53 60.4
Gohir.A11G030611 Gossypium hirsutum HOM05D004667 ORTHO05D005522 3.7e-10 67.8 53 58.5
Gohir.D11G033900 Gossypium hirsutum HOM05D004667 ORTHO05D005522 3.7e-10 67.8 53 58.5
Gorai.007G036700 Gossypium raimondii HOM05D004667 ORTHO05D005522 3.7e-10 67.8 53 58.5
Aa31LG4G16380 Aethionema arabicum HOM05D004667 ORTHO05D005522 4.8e-10 67.4 45 68.9
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 4.8e-10 67.4 52 61.5
MD14G1198000 Malus domestica HOM05D004667 ORTHO05D005522 4.8e-10 67.4 55 58.2
Hma1.2p1_0735F.1_g210470 Hydrangea macrophylla HOM05D004667 ORTHO05D005522 1.1e-09 66.2 55 60.0
ClCG06G016270 Citrullus lanatus HOM05D004667 ORTHO05D005522 1.4e-09 65.9 52 57.7
Dinv38692 Davidia involucrata HOM05D004667 ORTHO05D005522 1.4e-09 65.9 55 56.4
Dinv19946 Davidia involucrata HOM05D004667 ORTHO05D005522 1.8e-09 65.5 55 56.4
BcaC01g02286 Brassica carinata HOM05D004667 ORTHO05D005522 2.4e-09 65.1 39 79.5
A06p27240 Brassica napus HOM05D004667 ORTHO05D005522 2.4e-09 65.1 39 79.5
C03p67020 Brassica napus HOM05D004667 ORTHO05D005522 2.4e-09 65.1 39 79.5
BolC3t18977H Brassica oleracea HOM05D004667 ORTHO05D005522 2.4e-09 65.1 39 79.5
BraA06t25665Z Brassica rapa HOM05D004667 ORTHO05D005522 2.4e-09 65.1 39 79.5
CANSAT80G1185 Cannabis sativa HOM05D004667 ORTHO05D005522 2.4e-09 65.1 55 56.4
Potri.015G142700 Populus trichocarpa HOM05D004667 ORTHO05D005522 2.4e-09 65.1 55 54.5
BcaB05g23064 Brassica carinata HOM05D004667 ORTHO05D005522 3.1e-09 64.7 41 75.6
Ca_21829_v3 Cicer arietinum L. HOM05D004667 ORTHO05D005522 3.1e-09 64.7 57 52.6
Sabra15G0152700 Salix brachista HOM05D004667 ORTHO05D005522 3.1e-09 64.7 52 57.7
C01p32730 Brassica napus HOM05D004667 ORTHO05D005522 4.1e-09 64.3 41 73.2
BraA01t02497Z Brassica rapa HOM05D004667 ORTHO05D005522 4.1e-09 64.3 41 73.2
Manes.06G094100 Manihot esculenta HOM05D004667 ORTHO05D005522 5.4e-09 63.9 55 56.4
Psat4g051040 Pisum sativum HOM05D004667 ORTHO05D005522 5.4e-09 63.9 57 54.4
Ciclev10021941m.g Citrus clementina HOM05D004667 ORTHO05D005522 7.0e-09 63.5 57 56.1
Potri.003G074400 Populus trichocarpa HOM05D004667 ORTHO05D005522 7.0e-09 63.5 52 57.7
TPR.G34729 Trifolium pratense HOM05D004667 ORTHO05D005522 7.0e-09 63.5 55 52.7
TWI15G0884 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 7.0e-09 63.5 55 52.7
TWI60G0935 Tripterygium wilfordii HOM05D004667 ORTHO05D005522 7.0e-09 63.5 55 52.7
VMungo1215G1912 Vigna mungo HOM05D004667 ORTHO05D005522 7.0e-09 63.5 53 56.6
Lalb_Chr13g0303301 Lupinus albus HOM05D004667 ORTHO05D005522 1.2e-08 62.8 55 52.7
Phvul.003G191000 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 1.2e-08 62.8 53 54.7
BcaC09g49811 Brassica carinata HOM05D004667 ORTHO05D005522 1.6e-08 62.4 40 72.5
Sc04g0002550 Simmondsia chinensis HOM05D004667 ORTHO05D005522 1.6e-08 62.4 55 52.7
CARHR156320 Cardamine hirsuta HOM05D004667 ORTHO05D005522 2.0e-08 62.0 39 74.4
MELO3C017166.2 Cucumis melo HOM05D004667 ORTHO05D005522 2.0e-08 62.0 52 55.8
Sed0008118 Sechium edule HOM05D004667 ORTHO05D005522 2.0e-08 62.0 52 59.6
Actinidia37637 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.7e-08 61.6 53 54.7
Glyma.17G098900 Glycine max HOM05D004667 ORTHO05D005522 2.7e-08 61.6 53 52.8
Cpa.g.c30141.2 Carica papaya HOM05D004667 ORTHO05D005522 3.5e-08 61.2 55 52.7
A01p25820 Brassica napus HOM05D004667 ORTHO05D005522 4.5e-08 60.8 41 70.7
Lj5C112T10 Lonicera japonica HOM05D004667 ORTHO05D005522 4.5e-08 60.8 55 50.9
BolC1t03209H Brassica oleracea HOM05D004667 ORTHO05D005522 7.7e-08 60.1 39 71.8
Atru.chr9.2269 Acer truncatum HOM05D004667 ORTHO05D005522 1.0e-07 59.7 45 64.4
arahy.Tifrunner.gnm1.ann1.0RV7R4 Arachis hypogaea HOM05D004667 ORTHO05D005522 1.0e-07 59.7 57 50.9
CsaV3_1G002260 Cucumis sativus L. HOM05D004667 ORTHO05D005522 1.0e-07 59.7 52 53.8
Glyma.05G027600 Glycine max HOM05D004667 ORTHO05D005522 1.0e-07 59.7 53 50.9
Manes.14G077100 Manihot esculenta HOM05D004667 ORTHO05D005522 1.0e-07 59.7 63 52.4
vmacro17553 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 1.3e-07 59.3 54 53.7
MSTRG.4419 Avicennia marina HOM05D004667 ORTHO05D005522 1.7e-07 58.9 55 49.1
Lalb_Chr07g0177971 Lupinus albus HOM05D004667 ORTHO05D005522 1.7e-07 58.9 52 51.9
Nn3g17203 Nelumbo nucifera HOM05D004667 ORTHO05D005522 1.7e-07 58.9 52 50.0
Sabra03G0045100 Salix brachista HOM05D004667 ORTHO05D005522 1.7e-07 58.9 52 53.8
HPP92_006020 Vanilla planifolia HOM05D004366 ORTHO05D005058 1.7e-07 58.9 63 46.0
VMungo1309G0024 Vigna mungo HOM05D004667 ORTHO05D005522 1.7e-07 58.9 55 49.1
Medtr4g108360 Medicago truncatula HOM05D004667 ORTHO05D005522 2.3e-07 58.5 57 49.1
Actinidia04904 Actinidia chinensis HOM05D004667 ORTHO05D005522 2.9e-07 58.2 53 52.8
Cfa018960 Carpinus fangiana HOM05D004667 ORTHO05D005522 2.9e-07 58.2 48 58.3
Aqoxy3G03350 Aquilegia oxysepala HOM05D004667 ORTHO05D005522 3.8e-07 57.8 55 45.5
Sed0021322 Sechium edule HOM05D004667 ORTHO05D005522 3.8e-07 57.8 52 53.8
BolC3t19479H Brassica oleracea HOM05D004667 ORTHO05D005522 5.0e-07 57.4 40 67.5
Duzib068G0725 Durio zibethinus HOM05D004667 ORTHO05D005522 5.0e-07 57.4 48 56.2
arahy.Tifrunner.gnm1.ann1.U816VA Arachis hypogaea HOM05D004667 ORTHO05D005522 6.6e-07 57.0 50 54.0
PSO063G1198 Papaver somniferum HOM05D004667 ORTHO05D005522 6.6e-07 57.0 55 47.3
PSO832G1839 Papaver somniferum HOM05D004667 ORTHO05D005522 6.6e-07 57.0 55 47.3
HanXRQChr05g0158091 Helianthus annuus HOM05D004667 ORTHO05D005522 1.1e-06 56.2 52 51.9
Rhsim08G0156600 Rhododendron simsii HOM05D004667 ORTHO05D005522 1.1e-06 56.2 54 51.9
ECA246G3018 Erigeron canadensis HOM05D004667 ORTHO05D005522 1.5e-06 55.8 52 51.9
Ah.08g216800 Amaranthus hybridus HOM05D004667 ORTHO05D005522 1.9e-06 55.5 55 47.3
vmacro18196 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.5e-06 55.1 51 49.0
vmacro18198 Vaccinium macrocarpon HOM05D004667 ORTHO05D005522 2.5e-06 55.1 51 49.0
GSVIVG01008025001 Vitis vinifera HOM05D004667 ORTHO05D005522 2.5e-06 55.1 61 41.0
CSS0005857 Camellia sinensis var. sinensis HOM05D004667 ORTHO05D005522 3.3e-06 54.7 52 50.0
Nitab4.5_0000026g0120 Nicotiana tabacum HOM05D004667 ORTHO05D005522 3.3e-06 54.7 55 45.5
Phvul.009G188251 Phaseolus vulgaris HOM05D004667 ORTHO05D005522 3.3e-06 54.7 55 47.3
TAR371G0790 Trochodendron aralioides HOM05D004667 ORTHO05D005522 3.3e-06 54.7 55 43.6
Lsat_1_v5_gn_5_19381 Lactuca sativa HOM05D000189 ORTHO05D000474 4.2e-06 54.3 52 48.1
CDE05G0260 Ceratophyllum demersum HOM05D004667 ORTHO05D005522 5.5e-06 53.9 55 47.3
GSVIVG01011386001 Vitis vinifera HOM05D004667 ORTHO05D005522 9.5e-06 53.1 52 46.2


User provided reference genes

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