Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g02229 Brassica carinata HOM05D000101 ORTHO05D007021 8.7e-87 323.6 158 100.0
C03p67630 Brassica napus HOM05D000101 ORTHO05D007021 1.2e-67 260.0 158 84.2
BolSC21t60259H Brassica oleracea HOM05D000101 ORTHO05D007021 2.3e-47 192.6 125 79.2
A04p33060 Brassica napus HOM05D000101 ORTHO05D007021 1.3e-34 150.2 171 50.9
BraA04t18766Z Brassica rapa HOM05D000101 ORTHO05D007021 1.3e-34 150.2 171 50.9
BcaC02g07150 Brassica carinata HOM05D000101 ORTHO05D007021 1.1e-33 147.1 155 52.9
Sp4g25830 Schrenkiella parvula HOM05D000101 ORTHO05D007021 7.3e-33 144.4 149 55.0
AT2G43760 Arabidopsis thaliana HOM05D000101 ORTHO05D007021 2.1e-32 142.9 171 50.3
Carub.0004s2629 Capsella rubella HOM05D000101 ORTHO05D007021 2.1e-32 142.9 171 49.7
CARHR138950 Cardamine hirsuta HOM05D000101 ORTHO05D007021 2.8e-32 142.5 146 54.8
BcaC02g12365 Brassica carinata HOM05D000101 ORTHO05D007021 8.0e-32 141.0 166 50.0
C04p04720 Brassica napus HOM05D000101 ORTHO05D007021 8.0e-32 141.0 166 50.0
BolC4t22102H Brassica oleracea HOM05D000101 ORTHO05D007021 8.0e-32 141.0 166 50.0
A05p03970 Brassica napus HOM05D000101 ORTHO05D007021 1.0e-31 140.6 166 50.0
AL4G42630 Arabidopsis lyrata HOM05D000101 ORTHO05D007021 1.8e-31 139.8 171 49.7
Thhalv10001567m.g Eutrema salsugineum HOM05D000101 ORTHO05D007021 2.3e-31 139.4 171 49.1
BraA05t19385Z Brassica rapa HOM05D000101 ORTHO05D007021 8.9e-31 137.5 166 48.8
Aa31LG1G25480 Aethionema arabicum HOM05D000101 ORTHO05D007021 2.0e-30 136.3 153 50.3
FAN23G0853 Fragaria x ananassa HOM05D002590 ORTHO05D002763 1.3e-29 133.7 173 46.2
THA.LOC104808404 Tarenaya hassleriana HOM05D000101 ORTHO05D007021 6.4e-29 131.3 143 51.7
FvH4_1g18980 Fragaria vesca HOM05D000101 ORTHO05D007021 8.3e-29 131.0 173 45.1
FAN28G0419 Fragaria x ananassa HOM05D000101 ORTHO05D007021 8.3e-29 131.0 173 45.1
Potri.001G272100 Populus trichocarpa HOM05D000101 ORTHO05D007021 1.4e-28 130.2 146 47.9
Cpa.g.sc9.381 Carica papaya HOM05D000101 ORTHO05D007021 4.1e-28 128.6 154 48.1
COL.COLO4_33246 Corchorus olitorius HOM05D000101 ORTHO05D007021 5.4e-28 128.3 149 46.3
Duzib150G0203 Durio zibethinus HOM05D000101 ORTHO05D007021 7.0e-28 127.9 146 47.3
Duzib150G0818 Durio zibethinus HOM05D000101 ORTHO05D007021 7.0e-28 127.9 146 47.3
CiPaw.13G147800 Carya illinoinensis HOM05D000101 ORTHO05D007021 1.2e-27 127.1 157 46.5
Duzib170G0394 Durio zibethinus HOM05D000101 ORTHO05D007021 2.0e-27 126.3 146 47.3
Gorai.001G132800 Gossypium raimondii HOM05D000101 ORTHO05D007021 2.7e-27 125.9 146 46.6
Manes.01G177200 Manihot esculenta HOM05D000101 ORTHO05D007021 3.5e-27 125.6 146 45.9
Thecc.09G252400 Theobroma cacao HOM05D000101 ORTHO05D007021 3.5e-27 125.6 146 46.6
QL01p016256 Quercus lobata HOM05D000101 ORTHO05D007021 5.9e-27 124.8 157 44.6
RcHm_v2.0_Chr2g0110001 Rosa chinensis HOM05D000101 ORTHO05D007021 5.9e-27 124.8 173 42.8
Lsat_1_v5_gn_5_88160 Lactuca sativa HOM05D000101 ORTHO05D007021 7.8e-27 124.4 142 48.6
Lalb_Chr06g0173421 Lupinus albus HOM05D000101 ORTHO05D007021 7.8e-27 124.4 142 46.5
Prupe.4G269700 Prunus persica HOM05D000101 ORTHO05D007021 1.0e-26 124.0 166 42.8
GSVIVG01037393001 Vitis vinifera HOM05D000101 ORTHO05D007021 1.0e-26 124.0 146 47.3
QL01p016239 Quercus lobata HOM05D000101 ORTHO05D007021 1.7e-26 123.2 157 43.9
Ah.06g194870 Amaranthus hybridus HOM05D000101 ORTHO05D007021 3.9e-26 122.1 143 48.3
Ciclev10016806m.g Citrus clementina HOM05D000101 ORTHO05D007021 3.9e-26 122.1 157 44.6
Oeu041722.1 Olea europaea HOM05D000101 ORTHO05D007021 3.9e-26 122.1 153 43.1
GSVIVG01037400001 Vitis vinifera HOM05D000101 ORTHO05D007021 3.9e-26 122.1 146 46.6
SGA_v2.0_scaffold13G06395 Striga asiatica HOM05D000101 ORTHO05D007021 5.0e-26 121.7 146 45.2
VMungo0540G1253 Vigna mungo HOM05D000101 ORTHO05D007021 5.0e-26 121.7 153 43.1
CANSAT54G0276 Cannabis sativa HOM05D000101 ORTHO05D007021 6.6e-26 121.3 173 41.6
Dinv29321 Davidia involucrata HOM05D000101 ORTHO05D007021 6.6e-26 121.3 146 45.2
Gohir.D08G019100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 6.6e-26 121.3 146 44.5
Gorai.004G013600 Gossypium raimondii HOM05D000101 ORTHO05D007021 6.6e-26 121.3 146 44.5
HanXRQChr10g0307811 Helianthus annuus HOM05D000101 ORTHO05D007021 6.6e-26 121.3 142 47.9
TWI79G1559 Tripterygium wilfordii HOM05D000101 ORTHO05D007021 8.6e-26 120.9 157 45.9
Haze_23275 Corylus avellana HOM05D000101 ORTHO05D007021 1.1e-25 120.6 157 42.7
EL10Ac4g10078 Beta vulgaris HOM05D000101 ORTHO05D007021 1.5e-25 120.2 146 47.3
CsaV3_6G038720 Cucumis sativus L. HOM05D000101 ORTHO05D007021 1.5e-25 120.2 146 45.2
Glyma.20G043800 Glycine max HOM05D000101 ORTHO05D007021 1.5e-25 120.2 154 42.2
Phvul.006G016500 Phaseolus vulgaris HOM05D000101 ORTHO05D007021 1.5e-25 120.2 153 42.5
Sc06g0003480 Simmondsia chinensis HOM05D000101 ORTHO05D007021 2.5e-25 119.4 146 44.5
MSTRG.17651 Avicennia marina HOM05D000101 ORTHO05D007021 3.3e-25 119.0 146 44.5
CSS0002182 Camellia sinensis var. sinensis HOM05D000101 ORTHO05D007021 3.3e-25 119.0 142 45.8
AUR62006572 Chenopodium quinoa HOM05D000101 ORTHO05D007021 3.3e-25 119.0 113 53.1
ClCG02G022620 Citrullus lanatus HOM05D000101 ORTHO05D007021 3.3e-25 119.0 146 45.2
MELO3C014535.2 Cucumis melo HOM05D000101 ORTHO05D007021 3.3e-25 119.0 146 45.2
Dinv29322 Davidia involucrata HOM05D000101 ORTHO05D007021 3.3e-25 119.0 146 44.5
Dinv29324 Davidia involucrata HOM05D000101 ORTHO05D007021 3.3e-25 119.0 146 44.5
Eucgr.J00668 Eucalyptus grandis HOM05D000101 ORTHO05D007021 3.3e-25 119.0 146 45.9
Lj6g0006302 Lotus japonicus HOM05D000101 ORTHO05D007021 3.3e-25 119.0 142 44.4
Rhsim13G0204000 Rhododendron simsii HOM05D000101 ORTHO05D007021 3.3e-25 119.0 146 45.2
AUR62000226 Chenopodium quinoa HOM05D000101 ORTHO05D007021 4.3e-25 118.6 143 45.5
Ca_25981_v3 Cicer arietinum L. HOM05D000101 ORTHO05D007021 4.3e-25 118.6 152 42.1
Migut.N02406 Erythranthe guttata HOM05D000101 ORTHO05D007021 4.3e-25 118.6 148 45.3
Gohir.A08G009100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 4.3e-25 118.6 146 44.5
SGA_v2.0_scaffold79G25529 Striga asiatica HOM05D000101 ORTHO05D007021 5.6e-25 118.2 146 43.8
Peaxi162Scf00526g00083 Petunia axillaris HOM05D000101 ORTHO05D007021 9.5e-25 117.5 146 44.5
TPR.G11957 Trifolium pratense HOM05D000101 ORTHO05D007021 9.5e-25 117.5 160 40.0
CAN.G65.208 Capsicum annuum HOM05D000101 ORTHO05D007021 1.2e-24 117.1 146 43.2
Cc01_g07360 Coffea canephora HOM05D000101 ORTHO05D007021 1.2e-24 117.1 149 43.0
Glyma.07G235100 Glycine max HOM05D000101 ORTHO05D007021 1.2e-24 117.1 142 43.0
Lj2C98T13 Lonicera japonica HOM05D000101 ORTHO05D007021 2.1e-24 116.3 154 41.6
Lj6g0007250 Lotus japonicus HOM05D000101 ORTHO05D007021 2.8e-24 115.9 142 43.7
DCAR_002122 Daucus carota HOM05D000101 ORTHO05D007021 3.6e-24 115.5 146 43.8
Solyc06g073615.1 Solanum lycopersicum HOM05D000101 ORTHO05D007021 3.6e-24 115.5 146 43.8
Sopen06g030030 Solanum pennellii HOM05D000101 ORTHO05D007021 3.6e-24 115.5 146 43.8
unitig_22.g6178 Utricularia gibba HOM05D000101 ORTHO05D007021 3.6e-24 115.5 151 42.4
PGR119G0271 Punica granatum HOM05D000101 ORTHO05D007021 4.7e-24 115.2 149 43.6
Sed0019464 Sechium edule HOM05D000101 ORTHO05D007021 4.7e-24 115.2 146 43.2
Medtr8g036270 Medicago truncatula HOM05D000101 ORTHO05D007021 6.2e-24 114.8 153 39.2
Lj2C4T1 Lonicera japonica HOM05D000101 ORTHO05D007021 8.0e-24 114.4 154 40.9
Nn2g10490 Nelumbo nucifera HOM05D000101 ORTHO05D007021 8.0e-24 114.4 142 43.0
ECA234G3554 Erigeron canadensis HOM05D000101 ORTHO05D007021 1.0e-23 114.0 142 45.1
TAR383G0318 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.0e-23 114.0 143 43.4
TAR383G0810 Trochodendron aralioides HOM05D000101 ORTHO05D007021 1.4e-23 113.6 143 43.4
SalBow3G0539 Salvia bowleyana HOM05D000101 ORTHO05D007021 1.8e-23 113.2 153 42.5
Aqoxy2G03523 Aquilegia oxysepala HOM05D000101 ORTHO05D007021 2.3e-23 112.8 146 42.5
Glyma.07G235000 Glycine max HOM05D000101 ORTHO05D007021 2.3e-23 112.8 142 41.5
Psat5g198640 Pisum sativum HOM05D000101 ORTHO05D007021 2.3e-23 112.8 158 40.5
PSO017G1758 Papaver somniferum HOM05D000101 ORTHO05D007021 3.1e-23 112.5 147 45.6
PSO675G1036 Papaver somniferum HOM05D000101 ORTHO05D007021 4.0e-23 112.1 142 45.1
Medtr3g041720 Medicago truncatula HOM05D000101 ORTHO05D007021 6.8e-23 111.3 151 39.7
Nitab4.5_0000271g0210 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.2e-22 110.5 146 41.8
Nitab4.5_0006265g0050 Nicotiana tabacum HOM05D000101 ORTHO05D007021 1.2e-22 110.5 146 41.8
PGSC0003DMG400005919 Solanum tuberosum HOM05D000101 ORTHO05D007021 2.6e-22 109.4 146 43.2
MBI16_g00843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 1.7e-21 106.7 151 40.4
Gohir.D07G123100 Gossypium hirsutum HOM05D000101 ORTHO05D007021 2.2e-21 106.3 110 49.1
CDE04G1472 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 6.4e-21 104.8 153 39.2
Actinidia20391 Actinidia chinensis HOM05D000101 ORTHO05D007021 8.3e-21 104.4 145 40.0
CDE06G1918 Ceratophyllum demersum HOM05D000101 ORTHO05D007021 1.1e-20 104.0 153 39.2
Gohir.A07G118800 Gossypium hirsutum HOM05D000101 ORTHO05D007021 1.1e-20 104.0 110 47.3
C04p70760 Brassica napus HOM05D000101 ORTHO05D007021 1.4e-20 103.6 139 47.5
BolC4t28578H Brassica oleracea HOM05D000101 ORTHO05D007021 1.4e-20 103.6 139 47.5
SGA_v2.0_scaffold52G19230 Striga asiatica HOM05D000101 ORTHO05D007021 2.4e-20 102.8 120 45.8
MBI15_g46843_MAGBIO Magnolia biondii HOM05D000101 ORTHO05D007021 4.1e-20 102.1 151 38.4
ATR0626G326 Amborella trichopoda HOM05D000101 ORTHO05D007021 1.2e-19 100.5 153 39.9
Oeu046204.1 Olea europaea HOM05D000101 ORTHO05D007021 4.6e-19 98.6 125 43.2
SHI24924 Sapria himalayana HOM05D000101 ORTHO05D007021 1.7e-18 96.7 149 38.3
SEGI_13887 Sequoiadendron giganteum HOM05D000101 ORTHO05D007021 1.7e-18 96.7 140 40.0
HPP92_017376 Vanilla planifolia HOM05D000101 ORTHO05D007021 7.3e-17 91.3 132 38.6
Lsat_1_v5_gn_5_88140 Lactuca sativa HOM05D000101 ORTHO05D007021 1.2e-16 90.5 139 42.4
Atru.chr3.2842 Acer truncatum HOM05D000101 ORTHO05D007021 3.6e-16 89.0 102 46.1
Pp3c13_8000 Physcomitrium patens HOM05D000101 ORTHO05D007021 1.8e-15 86.7 146 38.4
BcaB02g08904 Brassica carinata HOM05D005622 ORTHO05D002854 2.3e-15 86.3 61 70.5
Os02g0140300 Oryza sativa ssp. japonica HOM05D000101 ORTHO05D007021 2.3e-15 86.3 145 35.9
SMO119G0082 Selaginella moellendorffii HOM05D000101 ORTHO05D007021 5.2e-15 85.1 130 40.8
Mapoly0016s0014 Marchantia polymorpha HOM05D000101 ORTHO05D007021 8.9e-15 84.3 132 38.6
Zm00001eb208120 Zea mays HOM05D000101 ORTHO05D007021 2.0e-14 83.2 141 36.9
AagrBONN_evm.TU.Sc2ySwM_228.724 Anthoceros agrestis HOM05D000101 ORTHO05D007021 2.1e-11 73.2 148 33.1
Sabra16G0167400 Salix brachista HOM05D000101 ORTHO05D007021 3.5e-11 72.4 122 40.2
Cre07.g322250 Chlamydomonas reinhardtii HOM05D000101 ORTHO05D007021 1.1e-09 67.4 124 32.3
CBR_g72677 Chara braunii HOM05D000101 ORTHO05D007021 6.8e-07 58.2 133 30.1
MCO04G049 Micromonas commoda HOM05D000101 ORTHO05D007021 2.6e-06 56.2 114 31.6


User provided reference genes

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