Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01716 Brassica carinata HOM05D005032 ORTHO05D006268 4.3e-130 468.0 237 100.0
C03p72880 Brassica napus HOM05D005032 ORTHO05D006268 4.3e-130 468.0 237 100.0
BolC3t19586H Brassica oleracea HOM05D005032 ORTHO05D006268 4.3e-130 468.0 237 100.0
A08p27010 Brassica napus HOM05D005032 ORTHO05D006268 1.1e-128 463.4 238 99.6
BraA08t34647Z Brassica rapa HOM05D005032 ORTHO05D006268 1.1e-128 463.4 238 99.6
AL1G39800 Arabidopsis lyrata HOM05D005032 ORTHO05D006268 2.4e-125 452.2 237 96.2
Thhalv10007483m.g Eutrema salsugineum HOM05D005032 ORTHO05D006268 2.1e-124 449.1 237 94.9
AT1G25500 Arabidopsis thaliana HOM05D005032 ORTHO05D006268 2.7e-124 448.7 237 95.4
Carub.0001s2498 Capsella rubella HOM05D005032 ORTHO05D006268 2.7e-124 448.7 237 95.4
CARHR025960 Cardamine hirsuta HOM05D005032 ORTHO05D006268 3.9e-123 444.9 237 94.5
Sp1g22710 Schrenkiella parvula HOM05D005032 ORTHO05D006268 5.1e-123 444.5 237 94.9
Aa31LG7G9000 Aethionema arabicum HOM05D005032 ORTHO05D006268 2.9e-118 428.7 237 90.3
THA.LOC104808234 Tarenaya hassleriana HOM05D005032 ORTHO05D006268 1.2e-111 406.8 237 86.1
Atru.chr11.1329 Acer truncatum HOM05D005032 ORTHO05D006268 2.4e-88 329.3 237 69.6
GSVIVG01011930001 Vitis vinifera HOM05D005032 ORTHO05D006268 4.5e-87 325.1 240 69.2
Duzib248G0180 Durio zibethinus HOM05D005032 ORTHO05D006268 5.9e-87 324.7 237 71.7
Thecc.02G359100 Theobroma cacao HOM05D005032 ORTHO05D006268 2.2e-86 322.8 237 70.9
TPR.G26307 Trifolium pratense HOM05D005032 ORTHO05D006268 6.5e-86 321.2 235 68.1
Lj5g0015640 Lotus japonicus HOM05D005032 ORTHO05D006268 1.4e-85 320.1 239 68.2
Dinv21116 Davidia involucrata HOM05D005032 ORTHO05D006268 2.5e-85 319.3 237 67.9
arahy.Tifrunner.gnm1.ann1.HPX6PX Arachis hypogaea HOM05D005032 ORTHO05D006268 4.2e-85 318.5 238 67.2
arahy.Tifrunner.gnm1.ann1.WF5P9Q Arachis hypogaea HOM05D005032 ORTHO05D006268 7.2e-85 317.8 238 66.8
Ah.03g137830 Amaranthus hybridus HOM05D005032 ORTHO05D006268 9.4e-85 317.4 223 67.7
CANSAT64G1793 Cannabis sativa HOM05D005032 ORTHO05D006268 2.7e-84 315.8 238 67.2
Gohir.A12G169300 Gossypium hirsutum HOM05D005032 ORTHO05D006268 3.6e-84 315.5 237 68.8
Gorai.008G185100 Gossypium raimondii HOM05D005032 ORTHO05D006268 6.1e-84 314.7 237 68.4
Ca_11190_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 2.3e-83 312.8 238 68.1
QL01p044542 Quercus lobata HOM05D005032 ORTHO05D006268 2.3e-83 312.8 237 65.8
CiPaw.15G004700 Carya illinoinensis HOM05D005032 ORTHO05D006268 3.0e-83 312.4 237 68.8
Phvul.007G025400 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 5.1e-83 311.6 237 67.1
VMungo0720G2532 Vigna mungo HOM05D005032 ORTHO05D006268 6.7e-83 311.2 237 67.1
TAR374G1139 Trochodendron aralioides HOM05D005032 ORTHO05D006268 1.5e-82 310.1 238 66.8
Lalb_Chr02g0146101 Lupinus albus HOM05D005032 ORTHO05D006268 3.3e-82 308.9 238 65.5
Glyma.10G276200 Glycine max HOM05D005032 ORTHO05D006268 5.7e-82 308.1 235 66.0
PGR102G0428 Punica granatum HOM05D005032 ORTHO05D006268 5.7e-82 308.1 237 66.7
Cfa018616 Carpinus fangiana HOM05D005032 ORTHO05D006268 1.3e-81 307.0 237 66.2
Hund25090 Selenicereus undatus HOM05D005032 ORTHO05D006268 2.2e-81 306.2 227 64.3
Sc04g0004960 Simmondsia chinensis HOM05D005032 ORTHO05D006268 2.2e-81 306.2 237 64.1
AUR62002904 Chenopodium quinoa HOM05D005032 ORTHO05D006268 3.7e-81 305.4 237 65.0
Gorai.013G081000 Gossypium raimondii HOM05D005032 ORTHO05D006268 3.7e-81 305.4 240 65.8
EL10Ac6g14461 Beta vulgaris HOM05D005032 ORTHO05D006268 4.8e-81 305.1 237 65.8
Actinidia13669 Actinidia chinensis HOM05D005032 ORTHO05D006268 6.3e-81 304.7 239 65.3
RcHm_v2.0_Chr4g0435621 Rosa chinensis HOM05D005032 ORTHO05D006268 6.3e-81 304.7 231 65.4
Gohir.D13G070800 Gossypium hirsutum HOM05D005032 ORTHO05D006268 2.4e-80 302.8 240 65.0
Ciclev10031322m.g Citrus clementina HOM05D005032 ORTHO05D006268 3.1e-80 302.4 237 65.8
FvH4_4g27760 Fragaria vesca HOM05D005032 ORTHO05D006268 3.1e-80 302.4 233 64.8
FAN12G2852 Fragaria x ananassa HOM05D005032 ORTHO05D006268 3.1e-80 302.4 233 64.8
CSS0031703 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 5.3e-80 301.6 215 67.0
CiPaw.16G004100 Carya illinoinensis HOM05D005032 ORTHO05D006268 5.3e-80 301.6 233 65.2
Medtr5g054780 Medicago truncatula HOM05D005032 ORTHO05D006268 5.3e-80 301.6 222 66.2
TPR.G38289 Trifolium pratense HOM05D005032 ORTHO05D006268 5.3e-80 301.6 199 71.9
VMungo1215G1708 Vigna mungo HOM05D005032 ORTHO05D006268 5.3e-80 301.6 199 72.4
ClCG05G022930 Citrullus lanatus HOM05D005032 ORTHO05D006268 9.1e-80 300.8 239 64.0
Glyma.01G084500 Glycine max HOM05D005032 ORTHO05D006268 9.1e-80 300.8 199 71.4
CSS0042031 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.2e-79 300.4 215 66.5
Lj2g0024967 Lotus japonicus HOM05D005032 ORTHO05D006268 1.5e-79 300.1 199 72.4
Prupe.1G307200 Prunus persica HOM05D005032 ORTHO05D006268 1.5e-79 300.1 234 64.1
Haze_17453 Corylus avellana HOM05D005032 ORTHO05D006268 2.0e-79 299.7 254 62.6
Glyma.20G113500 Glycine max HOM05D005032 ORTHO05D006268 2.0e-79 299.7 237 64.1
Lalb_Chr17g0341981 Lupinus albus HOM05D005032 ORTHO05D006268 2.0e-79 299.7 230 65.7
Sabra08G0089600 Salix brachista HOM05D005032 ORTHO05D006268 2.0e-79 299.7 235 64.7
DCAR_026721 Daucus carota HOM05D005032 ORTHO05D006268 2.6e-79 299.3 240 65.0
Medtr1g111330 Medicago truncatula HOM05D005032 ORTHO05D006268 3.5e-79 298.9 239 64.9
Phvul.003G028700 Phaseolus vulgaris HOM05D005032 ORTHO05D006268 5.9e-79 298.1 199 71.4
Potri.008G118200 Populus trichocarpa HOM05D005032 ORTHO05D006268 7.7e-79 297.7 235 63.8
MELO3C012225.2 Cucumis melo HOM05D005032 ORTHO05D006268 1.3e-78 297.0 239 63.6
MD13G1044800 Malus domestica HOM05D005032 ORTHO05D006268 1.7e-78 296.6 233 63.5
AUR62035263 Chenopodium quinoa HOM05D005032 ORTHO05D006268 2.9e-78 295.8 214 66.8
FAN07G0299 Fragaria x ananassa HOM05D005032 ORTHO05D006268 2.9e-78 295.8 237 63.3
Gohir.A13G053540 Gossypium hirsutum HOM05D005032 ORTHO05D006268 3.8e-78 295.4 242 64.0
CsaV3_5G034080 Cucumis sativus L. HOM05D005032 ORTHO05D006268 8.5e-78 294.3 239 62.3
HanXRQChr16g0529611 Helianthus annuus HOM05D005032 ORTHO05D006268 8.5e-78 294.3 233 63.1
Ca_19113_v3 Cicer arietinum L. HOM05D005032 ORTHO05D006268 1.5e-77 293.5 224 65.2
Oeu041892.2 Olea europaea HOM05D005032 ORTHO05D006268 1.9e-77 293.1 197 70.1
Psat6g229600 Pisum sativum HOM05D005032 ORTHO05D006268 3.2e-77 292.4 197 71.1
FAN22G0537 Fragaria x ananassa HOM05D005032 ORTHO05D006268 7.2e-77 291.2 206 67.5
Lsat_1_v5_gn_3_59981 Lactuca sativa HOM05D005032 ORTHO05D006268 7.2e-77 291.2 234 61.1
Sabra10G0097300 Salix brachista HOM05D005032 ORTHO05D006268 7.2e-77 291.2 240 62.9
Cc00_g17470 Coffea canephora HOM05D005032 ORTHO05D006268 1.6e-76 290.0 219 63.9
Migut.E00317 Erythranthe guttata HOM05D005032 ORTHO05D006268 1.6e-76 290.0 238 63.9
Lsat_1_v5_gn_4_18881 Lactuca sativa HOM05D005032 ORTHO05D006268 6.1e-76 288.1 237 61.6
Nn3g17775 Nelumbo nucifera HOM05D005032 ORTHO05D006268 6.1e-76 288.1 229 65.1
MSTRG.2252 Avicennia marina HOM05D005032 ORTHO05D006268 1.0e-75 287.3 234 60.7
MD16G1046200 Malus domestica HOM05D005032 ORTHO05D006268 1.8e-75 286.6 236 61.4
Potri.010G128100 Populus trichocarpa HOM05D005032 ORTHO05D006268 2.3e-75 286.2 235 62.1
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 3.0e-75 285.8 237 62.4
arahy.Tifrunner.gnm1.ann1.P6ZXGF Arachis hypogaea HOM05D005032 ORTHO05D006268 3.0e-75 285.8 237 62.4
Psat2g101480 Pisum sativum HOM05D005032 ORTHO05D006268 3.9e-75 285.4 199 68.3
CDE05G1095 Ceratophyllum demersum HOM05D005032 ORTHO05D006268 1.1e-74 283.9 237 59.5
HanXRQChr17g0552231 Helianthus annuus HOM05D005032 ORTHO05D006268 2.6e-74 282.7 234 59.8
PSO782G1090 Papaver somniferum HOM05D005032 ORTHO05D006268 7.4e-74 281.2 237 61.2
Rhsim12G0082300 Rhododendron simsii HOM05D005032 ORTHO05D006268 2.8e-73 279.3 247 58.7
CAN.G656.42 Capsicum annuum HOM05D005032 ORTHO05D006268 1.4e-72 276.9 200 65.5
Lj6A763T35 Lonicera japonica HOM05D005032 ORTHO05D006268 1.4e-72 276.9 283 54.8
PSO063G0757 Papaver somniferum HOM05D005032 ORTHO05D006268 7.0e-72 274.6 237 59.9
Peaxi162Scf00380g00811 Petunia axillaris HOM05D005032 ORTHO05D006268 1.6e-71 273.5 220 62.7
Lj6A762T40 Lonicera japonica HOM05D005032 ORTHO05D006268 4.5e-71 271.9 280 54.6
Sed0015336 Sechium edule HOM05D005032 ORTHO05D006268 1.3e-70 270.4 237 59.9
vmacro01369 Vaccinium macrocarpon HOM05D005032 ORTHO05D006268 2.9e-70 269.2 246 56.5
ECA246G3837 Erigeron canadensis HOM05D005032 ORTHO05D006268 3.8e-70 268.9 236 57.6
PGSC0003DMG402012961 Solanum tuberosum HOM05D005032 ORTHO05D006268 3.8e-70 268.9 237 58.6
Sopen05g005490 Solanum pennellii HOM05D005032 ORTHO05D006268 1.1e-69 267.3 244 55.3
TWI79G0027 Tripterygium wilfordii HOM05D005032 ORTHO05D006268 1.1e-69 267.3 238 59.2
Aqoxy3G03931 Aquilegia oxysepala HOM05D005032 ORTHO05D006268 1.5e-69 266.9 241 58.1
Solyc05g009670.3 Solanum lycopersicum HOM05D005032 ORTHO05D006268 1.5e-69 266.9 244 55.3
Eucgr.B03034 Eucalyptus grandis HOM05D005032 ORTHO05D006268 2.5e-69 266.2 237 59.1
ATR0097G002 Amborella trichopoda HOM05D005032 ORTHO05D006268 9.4e-69 264.2 238 59.2
Nitab4.5_0000672g0140 Nicotiana tabacum HOM05D005032 ORTHO05D006268 4.7e-68 261.9 183 68.9
Nitab4.5_0003642g0010 Nicotiana tabacum HOM05D005032 ORTHO05D006268 4.7e-68 261.9 183 68.9
unitig_699.g19492 Utricularia gibba HOM05D005032 ORTHO05D006268 7.5e-66 254.6 194 58.8
COL.COLO4_07886 Corchorus olitorius HOM05D005032 ORTHO05D006268 9.7e-66 254.2 191 71.2
Manes.14G099000 Manihot esculenta HOM05D005032 ORTHO05D006268 1.3e-65 253.8 162 73.5
SalBow8G5398 Salvia bowleyana HOM05D005032 ORTHO05D006268 2.0e-63 246.5 247 54.7
Cpa.g.sc1.205 Carica papaya HOM05D005032 ORTHO05D006268 1.3e-62 243.8 179 69.3
ECA234G2686 Erigeron canadensis HOM05D005032 ORTHO05D006268 2.9e-62 242.7 234 56.0
HPP92_006145 Vanilla planifolia HOM05D005032 ORTHO05D006268 8.5e-62 241.1 207 57.5
SEGI_10382 Sequoiadendron giganteum HOM05D005032 ORTHO05D006268 1.0e-59 234.2 197 57.9
Actinidia38384 Actinidia chinensis HOM05D005032 ORTHO05D006268 5.4e-56 221.9 142 75.4
SMO165G0124 Selaginella moellendorffii HOM05D005032 ORTHO05D006268 4.4e-50 202.2 200 52.5
Os02g0580100 Oryza sativa ssp. japonica HOM05D005032 ORTHO05D006268 1.8e-48 196.8 223 45.7
Mapoly0004s0207 Marchantia polymorpha HOM05D005032 ORTHO05D006268 9.2e-48 194.5 230 43.9
Zm00001eb245170 Zea mays HOM05D005032 ORTHO05D006268 3.6e-44 182.6 227 44.1
CSS0044553 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 2.3e-35 153.3 110 70.0
Psat7g191480 Pisum sativum HOM05D005032 ORTHO05D006268 9.2e-32 141.4 101 72.3
CSS0048629 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D006268 1.6e-28 130.6 81 77.8
Psat2g182600 Pisum sativum HOM05D002751 ORTHO05D003005 1.7e-25 120.6 75 76.0
Oeu044386.2 Olea europaea HOM05D005032 ORTHO05D006268 2.7e-23 113.2 110 52.7
Psat0ss2010g0040 Pisum sativum HOM05D002683 ORTHO05D007757 8.6e-22 108.2 75 65.3
Psat4g141120 Pisum sativum HOM05D005032 ORTHO05D006268 1.9e-21 107.1 75 64.0
MBI13_g09687_MAGBIO Magnolia biondii HOM05D005032 ORTHO05D006268 2.0e-18 97.1 67 67.2
CSS0021499 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 6.4e-17 92.0 64 70.3
Gohir.D12G172600 Gossypium hirsutum HOM05D005032 ORTHO05D006268 2.1e-15 87.0 57 73.7
CSS0047250 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 9.6e-13 78.2 57 66.7
CSS0010323 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.1e-11 74.7 57 61.4
CSS0024978 Camellia sinensis var. sinensis HOM05D005032 ORTHO05D006268 1.1e-11 74.7 57 61.4
Psat0s3850g0040 Pisum sativum HOM05D005032 ORTHO05D006066 5.8e-10 68.9 151 29.1
Psat6g196200 Pisum sativum HOM05D005032 ORTHO05D006066 5.8e-10 68.9 151 29.1
Pp3c18_21450 Physcomitrium patens HOM05D002512 ORTHO05D002660 8.7e-06 55.1 134 33.6


User provided reference genes

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