Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 3.6e-205 718.0 360 100.0
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 5.4e-201 704.1 360 98.3
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 4.9e-186 654.4 365 92.3
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 4.9e-186 654.4 364 92.0
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.0e-175 620.2 328 96.0
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-150 537.0 367 76.8
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 7.4e-150 534.3 355 79.2
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 6.9e-148 527.7 356 78.7
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 2.0e-147 526.2 375 75.7
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 7.7e-147 524.2 366 74.6
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 8.5e-146 520.8 356 78.1
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 1.1e-145 520.4 357 78.2
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 5.5e-145 518.1 356 77.8
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 3.6e-144 515.4 374 73.3
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 8.8e-143 510.8 370 73.0
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 2.6e-142 509.2 356 74.7
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 7.7e-131 471.1 367 67.8
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 6.6e-114 414.8 295 78.3
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 1.0e-106 391.0 369 60.4
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 4.4e-102 375.6 362 59.9
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 9.2e-92 341.3 385 54.8
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.6e-88 329.3 373 52.0
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.1e-87 327.8 235 78.3
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 4.0e-87 325.9 367 51.8
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 8.9e-87 324.7 369 51.2
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 2.6e-86 323.2 369 50.9
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 2.9e-85 319.7 366 51.6
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 4.9e-85 318.9 376 49.7
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.4e-84 317.4 382 48.2
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 1.2e-83 314.3 382 48.2
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 7.8e-83 311.6 380 47.9
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 3.9e-82 309.3 373 48.8
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 8.6e-82 308.1 377 48.8
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 1.2e-80 304.3 378 50.3
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 3.6e-80 302.8 376 49.2
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 3.6e-80 302.8 380 48.2
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 4.7e-80 302.4 380 47.6
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.4e-79 300.8 372 49.7
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 3.1e-79 299.7 388 47.7
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 6.8e-79 298.5 344 48.8
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 8.9e-79 298.1 367 48.8
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.2e-78 297.7 391 45.3
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.5e-78 297.4 365 49.9
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 2.0e-78 297.0 372 50.0
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 5.8e-78 295.4 366 50.8
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 7.6e-78 295.0 373 47.5
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 1.9e-76 290.4 359 47.6
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 4.2e-76 289.3 366 47.8
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 5.4e-76 288.9 370 48.9
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 9.3e-76 288.1 373 47.5
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 2.1e-75 287.0 346 47.4
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 6.0e-75 285.4 369 47.2
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 2.3e-74 283.5 369 47.4
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.9e-73 280.4 353 49.3
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 1.9e-73 280.4 361 49.9
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 7.3e-73 278.5 367 46.9
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 7.3e-73 278.5 367 46.9
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 2.8e-72 276.6 365 45.8
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 2.8e-72 276.6 354 48.0
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 9.0e-71 271.6 394 45.7
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 2.6e-70 270.0 393 45.3
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.7e-69 267.3 363 43.8
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 2.9e-69 266.5 363 46.6
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 3.8e-69 266.2 129 96.1
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 8.4e-69 265.0 365 45.2
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 1.2e-67 261.2 357 47.1
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 3.0e-66 256.5 340 46.2
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 5.1e-66 255.8 352 44.6
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 1.1e-65 254.6 352 44.6
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.5e-65 253.4 357 44.5
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 4.3e-65 252.7 383 44.1
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 4.3e-65 252.7 358 44.1
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 5.6e-65 252.3 333 47.4
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 1.6e-64 250.8 438 38.1
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.8e-64 250.0 356 43.8
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 3.6e-64 249.6 352 43.8
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 3.6e-64 249.6 356 43.8
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 2.4e-63 246.9 356 44.1
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 6.9e-63 245.4 351 41.9
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 9.0e-63 245.0 349 43.8
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.2e-62 244.6 337 44.2
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 5.8e-62 242.3 361 43.8
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 3.8e-61 239.6 344 43.9
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 1.2e-59 234.6 364 42.9
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 1.6e-59 234.2 376 38.3
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 6.0e-59 232.3 352 43.2
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 1.3e-58 231.1 328 44.8
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 3.9e-58 229.6 358 41.6
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 3.3e-57 226.5 352 41.8
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 3.7e-56 223.0 410 38.8
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 4.8e-56 222.6 424 36.8
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 1.8e-55 220.7 384 39.3
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 2.0e-54 217.2 343 42.0
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 7.6e-54 215.3 336 43.2
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.3e-53 214.5 362 40.1
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 1.3e-53 214.5 237 53.6
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 4.9e-53 212.6 377 39.8
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.9e-52 210.7 348 41.7
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 7.9e-51 205.3 372 39.2
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 1.8e-50 204.1 343 40.5
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 3.7e-48 196.4 344 38.4
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 1.5e-46 191.0 366 38.8
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 3.4e-46 189.9 343 38.8
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 7.6e-46 188.7 212 49.1
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 6.5e-45 185.7 363 37.2
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 2.5e-44 183.7 355 36.1
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.2e-43 181.4 371 38.3
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 1.2e-43 181.4 378 33.3
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 3.0e-42 176.8 183 50.3
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 3.9e-42 176.4 339 38.1
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.5e-41 174.5 211 47.9
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.9e-41 174.1 211 47.9
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 3.7e-40 169.9 227 44.1
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 6.3e-40 169.1 340 33.8
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 1.1e-39 168.3 183 49.2
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 5.3e-39 166.0 187 47.6
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 4.5e-38 162.9 351 33.6
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 1.1e-36 158.3 341 34.3
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 2.7e-35 153.7 331 35.0
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 3.0e-34 150.2 346 32.7
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 2.5e-33 147.1 222 41.9
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 2.2e-32 144.1 93 74.2
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 2.4e-31 140.6 186 41.4
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 2.0e-30 137.5 292 37.0
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 6.7e-26 122.5 346 31.2
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 5.7e-25 119.4 129 56.6
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 1.8e-23 114.4 184 41.3
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 2.0e-17 94.4 103 55.3
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.3e-16 91.7 154 35.7
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 8.2e-16 89.0 119 47.9
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.3e-15 86.3 143 38.5
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.3e-15 86.3 143 39.2
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 7.7e-14 82.4 188 33.0
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.7e-13 81.3 162 29.6
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 3.2e-12 77.0 343 25.1
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 5.5e-12 76.3 177 26.6
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 9.4e-12 75.5 157 28.7
BolC3t19673H Brassica oleracea HOM05D005715 ORTHO05D007160 3.6e-11 73.6 39 94.9
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 3.0e-10 70.5 171 26.9
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 7.5e-09 65.9 161 29.8
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 9.8e-09 65.5 161 30.4
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 9.8e-09 65.5 161 30.4
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 9.8e-09 65.5 161 30.4
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 9.8e-09 65.5 161 30.4
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 9.8e-09 65.5 161 30.4
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 2.2e-08 64.3 161 29.8
PSO170G3598 Papaver somniferum HOM05D001735 ORTHO05D001640 2.8e-08 63.9 161 29.8
Aqoxy35s001 Aquilegia oxysepala HOM05D003138 ORTHO05D003789 3.5e-06 57.0 87 43.7


User provided reference genes

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