Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 2006.1 1000 100.0
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1963.7 1050 94.8
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1944.1 1050 94.0
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1909.8 1050 91.6
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1907.5 1050 91.4
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1776.9 1049 85.0
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1750.7 1049 83.6
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1718.7 1050 82.4
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1692.6 1050 80.8
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1684.1 1054 80.9
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1669.4 1052 80.2
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1501.1 1054 72.4
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1313.1 1048 62.8
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1302.3 1047 62.0
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1286.6 1042 61.2
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1269.6 1063 61.7
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1255.7 1051 59.9
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1255.4 1050 61.1
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1253.4 1052 59.6
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1251.5 1058 62.0
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1248.0 1050 59.1
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1247.3 1052 60.1
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1245.3 1052 59.0
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 1245.0 1050 59.6
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1243.0 1052 60.6
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1242.6 1040 59.6
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1239.9 1048 59.4
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1236.9 1052 60.6
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1231.1 1059 60.2
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1230.7 1030 59.9
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1228.4 1054 59.4
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1227.2 1048 58.4
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1220.3 1053 58.3
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1218.8 1047 58.9
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1218.4 1077 58.8
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1217.6 1050 59.5
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1214.1 1049 58.4
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1214.1 1055 58.2
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1211.8 1043 58.9
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1210.7 984 67.8
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1208.4 1051 58.6
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1208.0 1055 58.8
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1206.8 1047 58.1
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1203.3 1045 58.3
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1201.4 1056 57.6
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1198.7 1039 58.5
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1195.3 1046 57.6
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1194.5 1049 57.6
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1177.2 1060 56.7
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1174.5 1049 56.8
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1174.1 1054 57.4
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1171.0 1166 53.4
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1170.2 1060 56.5
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1169.5 1044 58.1
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1169.1 1049 57.0
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1164.1 1079 56.6
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1162.5 1043 56.9
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1161.7 1056 56.2
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1157.9 1055 56.3
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1156.7 1062 57.1
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1147.1 1010 58.0
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1137.5 1045 54.9
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1136.7 1051 55.6
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1132.5 1065 55.4
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1124.0 1043 55.4
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1122.5 1104 53.1
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1120.1 1050 53.2
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1118.2 1055 54.5
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1115.5 1085 53.6
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1112.1 1051 53.6
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1110.1 1054 54.1
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1107.4 1052 55.5
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1104.0 1076 53.4
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1096.6 1075 53.3
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1095.9 1051 54.6
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1093.2 1099 53.0
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1085.5 1050 52.8
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1083.2 1047 53.3
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1081.6 1047 53.2
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 1.4e-311 1073.2 1026 54.1
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 1.0e-310 1070.1 1033 52.9
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 1.0e-310 1070.1 1129 50.2
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 9.8e-301 1036.9 1049 51.2
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 5.4e-299 1031.2 1058 51.6
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 4.4e-293 1011.5 1049 51.4
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 4.4e-293 1011.5 1035 50.3
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 5.7e-293 1011.1 717 74.5
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 3.7e-292 1008.4 1042 49.8
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 1.4e-291 1006.5 851 59.7
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 2.0e-290 1002.7 1177 48.2
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 8.9e-286 987.3 1134 48.0
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.3e-284 983.4 1002 51.7
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 2.1e-271 939.5 1035 48.7
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.2e-258 897.1 867 53.2
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 3.9e-257 892.1 511 87.5
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 2.6e-245 852.8 1014 45.7
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.4e-243 847.0 1016 45.8
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 8.5e-228 794.7 831 51.6
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 9.7e-224 781.2 676 58.3
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 7.9e-218 761.5 511 75.7
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 2.6e-205 719.9 1058 39.3
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.0e-188 664.8 735 48.6
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.7e-183 646.4 707 48.7
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 2.0e-181 640.6 665 50.2
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.6e-178 630.9 507 61.5
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 4.9e-167 592.8 701 45.2
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 4.9e-167 592.8 819 43.2
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 8.1e-162 575.5 591 50.8
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 9.2e-158 562.0 835 39.3
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.6e-157 561.2 562 52.8
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 5.4e-150 536.2 1020 33.2
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 2.7e-149 533.9 392 67.1
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 8.7e-148 528.9 1006 36.4
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.6e-136 490.7 860 33.3
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 4.2e-126 456.8 350 67.7
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 3.5e-125 453.8 433 55.4
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 4.8e-114 416.8 374 57.0
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 6.3e-114 416.4 341 58.9
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.2e-112 412.1 439 48.3
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 6.1e-101 373.2 356 54.8
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-100 372.1 390 55.9
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.5e-94 351.3 858 31.1
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-87 328.9 265 67.5
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 5.0e-71 273.9 245 56.7
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 6.6e-71 273.5 834 27.9
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 4.0e-68 264.2 317 49.5
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 1.2e-67 262.7 210 68.1
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 7.5e-67 260.0 207 59.9
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 2.7e-64 251.5 221 55.7
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 7.0e-57 226.9 288 43.4
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 5.0e-55 220.7 203 50.7
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 1.4e-52 212.6 244 46.7
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 5.8e-51 207.2 953 25.4
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 1.7e-50 205.7 245 46.1
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.7e-50 204.5 165 60.6
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 2.4e-49 201.8 1159 23.2
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 3.5e-48 198.0 126 74.6
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 5.2e-44 184.1 284 43.7
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.6e-43 181.8 113 78.8
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.3e-38 164.9 192 43.8
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 5.4e-33 147.5 114 64.0
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 7.8e-24 117.1 163 42.9
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 6.6e-23 114.0 163 40.5
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 1.1e-22 113.2 104 59.6
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.4e-20 106.3 100 51.0
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 1.8e-20 105.9 106 50.9
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 9.0e-20 103.6 80 70.0
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 3.8e-18 98.2 71 63.4
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 2.3e-15 89.0 70 60.0
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 3.0e-15 88.6 120 40.0
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 3.9e-15 88.2 106 45.3
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 5.1e-15 87.8 70 60.0
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 1.6e-13 82.8 83 45.8
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 5.8e-11 74.3 70 55.7


User provided reference genes

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