Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35950 Brassica carinata HOM05D007390 ORTHO05D009114 1.2e-44 183.7 183 100.0
BcaC04g20197 Brassica carinata HOM05D007390 ORTHO05D009114 1.2e-23 114.0 183 45.4
BcaB08g35945 Brassica carinata HOM05D007390 ORTHO05D009114 1.2e-18 97.4 52 100.0
C09p46770 Brassica napus HOM05D007390 ORTHO05D009114 1.2e-18 97.4 52 100.0
BolC9t57528H Brassica oleracea HOM05D007390 ORTHO05D009114 1.2e-18 97.4 52 100.0
A10p13050 Brassica napus HOM05D007390 ORTHO05D009114 3.8e-17 92.4 52 94.2
BraA10t43400Z Brassica rapa HOM05D007390 ORTHO05D009114 3.8e-17 92.4 52 94.2
Sp6g17720 Schrenkiella parvula HOM05D007390 ORTHO05D009114 3.3e-13 79.3 52 82.7
Thhalv10012614m.g Eutrema salsugineum HOM05D007390 ORTHO05D009114 8.2e-12 74.7 52 76.9
Manes.15G058900 Manihot esculenta HOM05D007390 ORTHO05D009114 1.1e-11 74.3 60 66.7
COL.COLO4_09846 Corchorus olitorius HOM05D007390 ORTHO05D009114 1.8e-11 73.6 60 66.7
CARHR269210 Cardamine hirsuta HOM05D007390 ORTHO05D009114 6.9e-11 71.6 49 77.6
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 4.5e-10 68.9 47 76.6
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 3.8e-09 65.9 48 75.0
GSVIVG01012774001 Vitis vinifera HOM05D007390 ORTHO05D009114 3.8e-09 65.9 60 61.7
Atru.chr2.3702 Acer truncatum HOM05D007390 ORTHO05D009114 1.1e-08 64.3 60 60.0
Eucgr.G02563 Eucalyptus grandis HOM05D007390 ORTHO05D009114 1.4e-08 63.9 60 58.3
Lj8P179T40 Lonicera japonica HOM05D007390 ORTHO05D009114 1.4e-08 63.9 60 60.0
ClCG09G021340 Citrullus lanatus HOM05D007390 ORTHO05D009114 1.9e-08 63.5 60 55.0
Gohir.A01G092200 Gossypium hirsutum HOM05D007390 ORTHO05D009114 1.9e-08 63.5 57 61.4
CsaV3_3G042310 Cucumis sativus L. HOM05D007390 ORTHO05D009114 2.5e-08 63.2 60 55.0
MELO3C009949.2 Cucumis melo HOM05D007390 ORTHO05D009114 3.2e-08 62.8 60 55.0
Sed0024715 Sechium edule HOM05D007390 ORTHO05D009114 3.2e-08 62.8 60 53.3
Actinidia35406 Actinidia chinensis HOM05D007390 ORTHO05D009114 4.2e-08 62.4 60 55.0
CSS0024662 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 7.2e-08 61.6 60 58.3
CSS0045615 Camellia sinensis var. sinensis HOM05D007390 ORTHO05D009114 7.2e-08 61.6 60 58.3
Ah.03g135270 Amaranthus hybridus HOM05D007390 ORTHO05D009114 2.7e-07 59.7 57 52.6
Carub.0008s1619 Capsella rubella HOM05D007390 ORTHO05D009114 2.7e-07 59.7 47 68.1
Oeu049407.2 Olea europaea HOM05D007390 ORTHO05D009114 1.0e-06 57.8 60 55.0
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 2.3e-06 56.6 41 73.2
SalBow4G3102 Salvia bowleyana HOM05D007390 ORTHO05D009114 3.0e-06 56.2 60 50.0
EL10Ac4g07549 Beta vulgaris HOM05D007390 ORTHO05D009114 6.7e-06 55.1 57 49.1
MSTRG.27466 Avicennia marina HOM05D007390 ORTHO05D009114 8.8e-06 54.7 60 51.7


User provided reference genes

Program Settings