Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35851 Brassica carinata HOM05D005769 ORTHO05D006851 6.6e-75 284.3 177 100.0
BraA10t43314Z Brassica rapa HOM05D005769 ORTHO05D006851 1.7e-67 259.6 177 91.0
C09p45400 Brassica napus HOM05D005769 ORTHO05D006851 2.3e-67 259.2 177 91.0
BcaC04g20292 Brassica carinata HOM05D005769 ORTHO05D006851 1.1e-66 256.9 177 90.4
BolC9t57410H Brassica oleracea HOM05D005769 ORTHO05D006851 1.1e-66 256.9 177 90.4
A10p12180 Brassica napus HOM05D005769 ORTHO05D006851 6.4e-62 241.1 205 77.6
AL8G30290 Arabidopsis lyrata HOM05D005769 ORTHO05D006851 6.0e-60 234.6 203 74.9
Thhalv10014809m.g Eutrema salsugineum HOM05D005769 ORTHO05D006851 1.5e-58 229.9 178 85.4
Sp6g16810 Schrenkiella parvula HOM05D005769 ORTHO05D006851 1.5e-58 229.9 183 81.4
Carub.0008s1514 Capsella rubella HOM05D005769 ORTHO05D006851 5.6e-58 228.0 179 84.4
AT5G54850 Arabidopsis thaliana HOM05D005769 ORTHO05D006851 7.3e-58 227.6 203 72.9
CARHR268180 Cardamine hirsuta HOM05D005769 ORTHO05D006851 7.3e-58 227.6 180 82.8
THA.LOC104813420 Tarenaya hassleriana HOM05D005769 ORTHO05D006851 1.8e-48 196.4 175 63.4
Aa31LG3G10760 Aethionema arabicum HOM05D005769 ORTHO05D006851 3.2e-37 159.1 181 58.0
Thecc.07G043800 Theobroma cacao HOM05D005769 ORTHO05D006851 3.6e-33 145.6 193 48.2
COL.COLO4_09632 Corchorus olitorius HOM05D005769 ORTHO05D006851 2.0e-31 139.8 192 46.9
Potri.001G421000 Populus trichocarpa HOM05D005769 ORTHO05D006851 2.6e-31 139.4 193 48.2
Duzib170G0312 Durio zibethinus HOM05D005769 ORTHO05D006851 1.9e-29 133.3 190 45.8
Cfa020385 Carpinus fangiana HOM05D005769 ORTHO05D006851 5.4e-29 131.7 188 47.3
Haze_09647 Corylus avellana HOM05D005769 ORTHO05D006851 9.3e-29 131.0 188 47.3
Gohir.D01G065000 Gossypium hirsutum HOM05D005769 ORTHO05D006851 9.3e-29 131.0 192 45.8
Gorai.002G086700 Gossypium raimondii HOM05D005769 ORTHO05D006851 9.3e-29 131.0 192 45.8
Sabra16G0285900 Salix brachista HOM05D005769 ORTHO05D006851 9.3e-29 131.0 192 46.9
QL08p012043 Quercus lobata HOM05D005769 ORTHO05D006851 1.2e-28 130.6 191 46.1
Duzib213G1024 Durio zibethinus HOM05D005769 ORTHO05D006851 1.6e-28 130.2 190 45.8
Potri.011G136600 Populus trichocarpa HOM05D005769 ORTHO05D006851 2.1e-28 129.8 185 47.0
TWI38G1097 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 2.1e-28 129.8 185 47.6
Manes.03G126700 Manihot esculenta HOM05D005769 ORTHO05D006851 2.7e-28 129.4 184 44.6
Dinv40735 Davidia involucrata HOM05D005769 ORTHO05D006851 1.0e-27 127.5 190 44.7
Ciclev10010329m.g Citrus clementina HOM05D005769 ORTHO05D006851 1.3e-27 127.1 185 44.3
MD11G1222100 Malus domestica HOM05D005769 ORTHO05D006851 1.3e-27 127.1 190 46.3
QL08p011874 Quercus lobata HOM05D005769 ORTHO05D006851 1.3e-27 127.1 191 45.0
Gorai.009G425000 Gossypium raimondii HOM05D005769 ORTHO05D006851 2.3e-27 126.3 183 44.8
Gohir.A04G019100 Gossypium hirsutum HOM05D005769 ORTHO05D006851 3.0e-27 125.9 183 45.4
TWI39G0743 Tripterygium wilfordii HOM05D005769 ORTHO05D006851 3.9e-27 125.6 189 42.3
LjContig00351g0007061 Lotus japonicus HOM05D005769 ORTHO05D006851 5.1e-27 125.2 191 41.4
Medtr5g092090 Medicago truncatula HOM05D005769 ORTHO05D006851 1.1e-26 124.0 193 44.0
Gohir.D05G366600 Gossypium hirsutum HOM05D005769 ORTHO05D006851 1.5e-26 123.6 183 44.3
Gohir.A01G077900 Gossypium hirsutum HOM05D005769 ORTHO05D006851 2.5e-26 122.9 192 44.3
Hma1.2p1_1271F.1_g271830 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.3e-26 122.5 189 43.4
Hma1.2p1_1609F.1_g293426 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 3.3e-26 122.5 189 43.4
Atru.chr2.3278 Acer truncatum HOM05D005769 ORTHO05D006851 4.3e-26 122.1 190 42.6
CiPaw.11G187200 Carya illinoinensis HOM05D005769 ORTHO05D006851 7.4e-26 121.3 187 43.3
Prupe.4G209200 Prunus persica HOM05D005769 ORTHO05D006851 7.4e-26 121.3 190 43.7
Lj4g0016834 Lotus japonicus HOM05D005769 ORTHO05D006851 1.3e-25 120.6 191 40.3
Cpa.g.sc97.35 Carica papaya HOM05D005769 ORTHO05D006851 1.6e-25 120.2 186 42.5
arahy.Tifrunner.gnm1.ann1.B7V00M Arachis hypogaea HOM05D005769 ORTHO05D006851 2.8e-25 119.4 193 42.5
TAR626G0147 Trochodendron aralioides HOM05D005769 ORTHO05D006851 2.8e-25 119.4 197 43.1
Rhsim04G0002100 Rhododendron simsii HOM05D005769 ORTHO05D006851 3.7e-25 119.0 190 41.6
Ca_06306_v3 Cicer arietinum L. HOM05D005769 ORTHO05D006851 4.8e-25 118.6 200 41.5
Rhsim04G0001000 Rhododendron simsii HOM05D005769 ORTHO05D006851 4.8e-25 118.6 190 42.1
CiPaw.12G128000 Carya illinoinensis HOM05D005769 ORTHO05D006851 8.1e-25 117.9 185 44.3
FvH4_3g22210 Fragaria vesca HOM05D005769 ORTHO05D006851 8.1e-25 117.9 180 42.8
FAN11G0604 Fragaria x ananassa HOM05D005769 ORTHO05D006851 8.1e-25 117.9 180 42.8
Phvul.008G265600 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 8.1e-25 117.9 192 41.1
arahy.Tifrunner.gnm1.ann1.B9FWIC Arachis hypogaea HOM05D005769 ORTHO05D006851 1.1e-24 117.5 193 42.0
Glyma.14G025400 Glycine max HOM05D005769 ORTHO05D006851 1.1e-24 117.5 192 42.7
VMungo0647G1996 Vigna mungo HOM05D005769 ORTHO05D006851 1.1e-24 117.5 180 42.8
RcHm_v2.0_Chr5g0038281 Rosa chinensis HOM05D005769 ORTHO05D006851 1.8e-24 116.7 180 42.8
FAN21G0668 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.4e-24 116.3 191 42.4
Lalb_Chr04g0248581 Lupinus albus HOM05D005769 ORTHO05D006851 3.1e-24 115.9 191 42.4
FAN16G0333 Fragaria x ananassa HOM05D005769 ORTHO05D006851 5.3e-24 115.2 191 41.4
Nn1g03582 Nelumbo nucifera HOM05D005769 ORTHO05D006851 5.3e-24 115.2 197 37.6
Lj1P869T51 Lonicera japonica HOM05D005769 ORTHO05D006851 1.2e-23 114.0 191 39.8
FAN25G3736 Fragaria x ananassa HOM05D005769 ORTHO05D006851 2.0e-23 113.2 176 40.9
PGR031G3409 Punica granatum HOM05D005769 ORTHO05D006851 2.6e-23 112.8 187 40.1
CANSAT21G1553 Cannabis sativa HOM05D005769 ORTHO05D006851 5.8e-23 111.7 191 40.8
Manes.15G073700 Manihot esculenta HOM05D005769 ORTHO05D006851 7.6e-23 111.3 185 38.9
Glyma.02G289500 Glycine max HOM05D005769 ORTHO05D006851 1.3e-22 110.5 192 38.0
Migut.M01783 Erythranthe guttata HOM05D005769 ORTHO05D006851 1.7e-22 110.2 187 39.6
Oeu005460.1 Olea europaea HOM05D005769 ORTHO05D006851 1.7e-22 110.2 187 39.6
MSTRG.6907 Avicennia marina HOM05D005769 ORTHO05D006851 6.5e-22 108.2 191 39.3
Lj8E167T2 Lonicera japonica HOM05D005769 ORTHO05D006851 3.2e-21 105.9 191 39.8
Nitab4.5_0000653g0070 Nicotiana tabacum HOM05D005769 ORTHO05D006851 3.2e-21 105.9 187 39.6
Migut.H01842 Erythranthe guttata HOM05D005769 ORTHO05D006851 4.2e-21 105.5 180 41.1
Nitab4.5_0000397g0340 Nicotiana tabacum HOM05D005769 ORTHO05D006851 2.7e-20 102.8 187 39.0
unitig_0.g2389 Utricularia gibba HOM05D005769 ORTHO05D006851 2.7e-20 102.8 184 37.5
Nitab4.5_0000749g0110 Nicotiana tabacum HOM05D005769 ORTHO05D006851 6.0e-20 101.7 187 38.5
PGSC0003DMG400001093 Solanum tuberosum HOM05D005769 ORTHO05D006851 1.0e-19 100.9 178 46.6
HanXRQChr11g0336271 Helianthus annuus HOM05D005769 ORTHO05D006851 1.8e-19 100.1 175 41.7
Peaxi162Scf01097g00025 Petunia axillaris HOM05D005769 ORTHO05D006851 1.8e-19 100.1 187 38.5
PSO675G2145 Papaver somniferum HOM05D005769 ORTHO05D006851 5.1e-19 98.6 196 39.3
Sed0008399 Sechium edule HOM05D005769 ORTHO05D006851 6.7e-19 98.2 178 37.1
ClCG05G014450 Citrullus lanatus HOM05D005769 ORTHO05D006851 8.7e-19 97.8 188 36.7
Aqoxy1G03294 Aquilegia oxysepala HOM05D005769 ORTHO05D006851 4.3e-18 95.5 182 36.3
Cc05_g13510 Coffea canephora HOM05D005769 ORTHO05D006851 4.3e-18 95.5 182 37.4
Nitab4.5_0013016g0010 Nicotiana tabacum HOM05D005769 ORTHO05D006851 4.3e-18 95.5 179 38.0
Lj6g0021335 Lotus japonicus HOM05D005769 ORTHO05D006851 5.7e-18 95.1 184 34.2
CsaV3_3G023280 Cucumis sativus L. HOM05D005769 ORTHO05D006851 9.6e-18 94.4 178 37.6
Sopen10g002310 Solanum pennellii HOM05D005769 ORTHO05D006851 9.6e-18 94.4 188 37.2
Solyc10g006360.2 Solanum lycopersicum HOM05D005769 ORTHO05D006851 1.3e-17 94.0 188 37.2
CAN.G337.106 Capsicum annuum HOM05D005769 ORTHO05D006851 2.1e-17 93.2 184 38.0
PSO832G0238 Papaver somniferum HOM05D005769 ORTHO05D006851 2.1e-17 93.2 196 36.7
SalBow7G1695 Salvia bowleyana HOM05D005769 ORTHO05D006851 2.1e-17 93.2 182 39.0
PSO541G5959 Papaver somniferum HOM05D005769 ORTHO05D006851 2.8e-17 92.8 191 37.7
PGSC0003DMG400014393 Solanum tuberosum HOM05D005769 ORTHO05D006851 3.7e-17 92.4 188 36.7
MELO3C018076.2 Cucumis melo HOM05D005769 ORTHO05D006851 4.8e-17 92.0 179 38.5
Sed0023999 Sechium edule HOM05D005769 ORTHO05D006851 1.1e-16 90.9 181 35.9
Glyma.18G101700 Glycine max HOM05D005769 ORTHO05D006851 1.4e-16 90.5 173 36.4
VMungo0540G0361 Vigna mungo HOM05D005769 ORTHO05D006851 5.3e-16 88.6 189 34.9
ECA236G2121 Erigeron canadensis HOM05D005769 ORTHO05D006851 6.9e-16 88.2 201 36.8
Psat2g015240 Pisum sativum HOM05D005769 ORTHO05D006851 1.2e-15 87.4 199 34.7
Solyc07g064320.3 Solanum lycopersicum HOM05D005769 ORTHO05D006851 3.4e-15 85.9 189 36.5
Peaxi162Scf00450g00084 Petunia axillaris HOM05D005769 ORTHO05D006851 5.8e-15 85.1 187 36.9
SGA_v2.0_scaffold8G04301 Striga asiatica HOM05D005769 ORTHO05D006851 5.8e-15 85.1 180 36.7
Sopen07g032470 Solanum pennellii HOM05D005769 ORTHO05D006851 1.3e-14 84.0 189 36.0
PGSC0003DMG400013920 Solanum tuberosum HOM05D005769 ORTHO05D006851 2.2e-14 83.2 188 35.6
arahy.Tifrunner.gnm1.ann1.0M423A Arachis hypogaea HOM05D005769 ORTHO05D006851 5.0e-14 82.0 180 33.9
CSS0032413 Camellia sinensis var. sinensis HOM05D005769 ORTHO05D006851 1.1e-13 80.9 170 34.7
AUR62020499 Chenopodium quinoa HOM05D005769 ORTHO05D006851 1.4e-13 80.5 191 34.6
Glyma.09G100100 Glycine max HOM05D005769 ORTHO05D006851 1.9e-13 80.1 185 32.4
Sc16g0006260 Simmondsia chinensis HOM05D005769 ORTHO05D006851 7.2e-13 78.2 201 33.8
Actinidia09713 Actinidia chinensis HOM05D005769 ORTHO05D006851 9.3e-13 77.8 166 34.3
AUR62015707 Chenopodium quinoa HOM05D005769 ORTHO05D006851 4.6e-12 75.5 188 33.5
ATR0752G130 Amborella trichopoda HOM05D005769 ORTHO05D006851 7.9e-12 74.7 195 32.8
Zm00001eb322840 Zea mays HOM05D005769 ORTHO05D006851 7.9e-12 74.7 184 33.7
Oeu062604.3 Olea europaea HOM05D005769 ORTHO05D006851 1.0e-11 74.3 181 35.4
HanXRQChr05g0159131 Helianthus annuus HOM05D005769 ORTHO05D006851 3.9e-11 72.4 177 34.5
Phvul.006G038800 Phaseolus vulgaris HOM05D005769 ORTHO05D006851 3.9e-11 72.4 187 33.7
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 1.1e-10 70.9 168 35.7
Hma1.2p1_1748F.1_g300680 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 4.3e-10 68.9 183 32.8
Hma1.2p1_0328F.1_g126860 Hydrangea macrophylla HOM05D005769 ORTHO05D006851 7.4e-10 68.2 184 32.6
MBI18_g09843_MAGBIO Magnolia biondii HOM05D005769 ORTHO05D006851 3.7e-09 65.9 74 50.0
HPP92_014114 Vanilla planifolia HOM05D005769 ORTHO05D006851 4.8e-09 65.5 177 28.8
ECA234G1543 Erigeron canadensis HOM05D005769 ORTHO05D006851 1.1e-08 64.3 167 29.9
Cc05_g04810 Coffea canephora HOM05D005769 ORTHO05D006851 4.1e-08 62.4 168 29.2
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 9.0e-08 61.2 169 34.3
Oeu021395.2 Olea europaea HOM05D005769 ORTHO05D006851 3.4e-07 59.3 34 70.6
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.7e-07 58.2 166 29.5


User provided reference genes

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