Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35688 Brassica carinata HOM05D004891 ORTHO05D005997 1.3e-146 523.1 270 100.0
BcaC04g20477 Brassica carinata HOM05D004891 ORTHO05D005997 9.3e-121 437.2 273 87.9
C09p43070 Brassica napus HOM05D004891 ORTHO05D005997 9.3e-121 437.2 273 87.9
BolC9t57178H Brassica oleracea HOM05D004891 ORTHO05D005997 9.3e-121 437.2 273 87.9
Sp6g15430 Schrenkiella parvula HOM05D004891 ORTHO05D005997 3.6e-117 425.2 277 83.4
Thhalv10014380m.g Eutrema salsugineum HOM05D004891 ORTHO05D005997 2.4e-116 422.5 274 83.6
A10p10800 Brassica napus HOM05D004891 ORTHO05D005997 1.5e-115 419.9 273 85.7
BraA10t43162Z Brassica rapa HOM05D004891 ORTHO05D005997 1.4e-113 413.3 273 83.9
Carub.0008s1346 Capsella rubella HOM05D004891 ORTHO05D005997 1.9e-113 412.9 277 80.1
AL8G27930 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 1.0e-111 407.1 275 80.0
AT5G53280 Arabidopsis thaliana HOM05D004891 ORTHO05D005997 1.3e-111 406.8 275 79.6
CARHR266320 Cardamine hirsuta HOM05D004891 ORTHO05D005997 1.5e-107 393.3 275 77.5
C03p17830 Brassica napus HOM05D004891 ORTHO05D005997 5.1e-103 378.3 273 78.4
BolC3t14190H Brassica oleracea HOM05D004891 ORTHO05D005997 5.1e-103 378.3 273 78.4
BcaB01g04239 Brassica carinata HOM05D004891 ORTHO05D005997 3.7e-101 372.1 279 76.0
A03p15250 Brassica napus HOM05D004891 ORTHO05D005997 4.8e-101 371.7 277 75.8
BraA03t10818Z Brassica rapa HOM05D004891 ORTHO05D005997 1.4e-100 370.2 271 76.4
Aa31LG3G9250 Aethionema arabicum HOM05D004891 ORTHO05D005997 2.4e-100 369.4 272 73.5
BcaC01g06235 Brassica carinata HOM05D004891 ORTHO05D005997 2.8e-93 345.9 240 79.2
THA.LOC104825132 Tarenaya hassleriana HOM05D004891 ORTHO05D005997 4.8e-93 345.1 271 67.5
Cpa.g.sc3.45 Carica papaya HOM05D004891 ORTHO05D005997 2.2e-77 293.1 271 57.9
Thecc.03G192100 Theobroma cacao HOM05D004891 ORTHO05D005997 1.8e-76 290.0 274 55.8
COL.COLO4_35665 Corchorus olitorius HOM05D004891 ORTHO05D005997 5.9e-75 285.0 273 56.0
Duzib084G0775 Durio zibethinus HOM05D004891 ORTHO05D005997 7.7e-75 284.6 274 55.5
Manes.14G018900 Manihot esculenta HOM05D004891 ORTHO05D005997 1.3e-74 283.9 272 57.4
Gorai.008G271100 Gossypium raimondii HOM05D004891 ORTHO05D005997 7.2e-73 278.1 272 55.1
Gohir.A12G252100 Gossypium hirsutum HOM05D004891 ORTHO05D005997 2.1e-72 276.6 272 55.5
Gohir.D12G253400 Gossypium hirsutum HOM05D004891 ORTHO05D005997 2.1e-72 276.6 272 54.8
Dinv28341 Davidia involucrata HOM05D004891 ORTHO05D005997 6.1e-72 275.0 283 54.4
Potri.012G032200 Populus trichocarpa HOM05D004891 ORTHO05D005997 3.3e-70 269.2 286 54.2
Potri.015G022900 Populus trichocarpa HOM05D004891 ORTHO05D005997 4.4e-70 268.9 279 54.8
QL09p011070 Quercus lobata HOM05D004891 ORTHO05D005997 9.7e-70 267.7 278 53.6
Ciclev10005604m.g Citrus clementina HOM05D004891 ORTHO05D005997 2.2e-69 266.5 275 54.2
GSVIVG01028731001 Vitis vinifera HOM05D004891 ORTHO05D005997 6.3e-69 265.0 274 52.2
Cfa016358 Carpinus fangiana HOM05D004891 ORTHO05D005997 1.1e-68 264.2 286 53.5
CiPaw.05G258300 Carya illinoinensis HOM05D004891 ORTHO05D005997 1.8e-68 263.5 282 52.1
Haze_00106 Corylus avellana HOM05D004891 ORTHO05D005997 1.8e-68 263.5 285 53.0
FAN10G2020 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.1e-68 262.7 289 53.6
FAN10G2063 Fragaria x ananassa HOM05D004891 ORTHO05D005997 3.1e-68 262.7 289 53.6
TAR375G0232 Trochodendron aralioides HOM05D004891 ORTHO05D005997 4.1e-68 262.3 288 52.8
Medtr1g028580 Medicago truncatula HOM05D004891 ORTHO05D005997 3.5e-67 259.2 278 53.6
Actinidia08623 Actinidia chinensis HOM05D004891 ORTHO05D005997 5.9e-67 258.5 282 53.5
MD07G1284300 Malus domestica HOM05D004891 ORTHO05D005997 7.7e-67 258.1 274 53.3
Glyma.14G123700 Glycine max HOM05D004891 ORTHO05D005997 1.0e-66 257.7 276 53.3
Manes.06G156500 Manihot esculenta HOM05D004891 ORTHO05D005997 1.0e-66 257.7 271 53.5
CSS0046287 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 1.3e-66 257.3 291 52.2
Hma1.2p1_0327F.1_g126710 Hydrangea macrophylla HOM05D004891 ORTHO05D005997 1.7e-66 256.9 289 52.2
Phvul.008G159100 Phaseolus vulgaris HOM05D004891 ORTHO05D005997 1.7e-66 256.9 274 54.4
arahy.Tifrunner.gnm1.ann1.PB2THD Arachis hypogaea HOM05D004891 ORTHO05D005997 5.0e-66 255.4 280 52.9
arahy.Tifrunner.gnm1.ann1.6V5JG4 Arachis hypogaea HOM05D004891 ORTHO05D005997 8.5e-66 254.6 281 53.0
FvH4_7g30940 Fragaria vesca HOM05D004891 ORTHO05D005997 8.5e-66 254.6 293 51.2
RcHm_v2.0_Chr1g0380031 Rosa chinensis HOM05D004891 ORTHO05D005997 8.5e-66 254.6 284 53.5
TPR.G33305 Trifolium pratense HOM05D004891 ORTHO05D005997 1.1e-65 254.2 277 54.2
FAN06G4508 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.5e-65 253.8 293 50.9
VMungo0647G1360 Vigna mungo HOM05D004891 ORTHO05D005997 1.5e-65 253.8 269 53.2
Nitab4.5_0000473g0100 Nicotiana tabacum HOM05D004891 ORTHO05D005997 3.2e-65 252.7 291 49.8
Glyma.13G040300 Glycine max HOM05D004891 ORTHO05D005997 5.5e-65 251.9 284 50.4
FAN01G2480 Fragaria x ananassa HOM05D004891 ORTHO05D005997 1.6e-64 250.4 295 50.2
Rhsim03G0198300 Rhododendron simsii HOM05D004891 ORTHO05D005997 1.6e-64 250.4 292 52.7
SGA_v2.0_scaffold10G05259 Striga asiatica HOM05D004891 ORTHO05D005997 3.6e-64 249.2 276 50.7
Lj1g0012174 Lotus japonicus HOM05D004891 ORTHO05D005997 4.7e-64 248.8 283 51.9
Prupe.2G306500 Prunus persica HOM05D004891 ORTHO05D005997 4.7e-64 248.8 273 53.1
CANSAT21G1757 Cannabis sativa HOM05D004891 ORTHO05D005997 6.1e-64 248.4 273 52.0
TWI23G0467 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 6.1e-64 248.4 271 51.7
Lalb_Chr01g0014881 Lupinus albus HOM05D004891 ORTHO05D005997 1.4e-63 247.3 277 53.1
FAN06G0473 Fragaria x ananassa HOM05D004891 ORTHO05D005997 2.3e-63 246.5 320 48.4
MD01G1214600 Malus domestica HOM05D004891 ORTHO05D005997 4.0e-63 245.7 273 50.5
SalBow2G0402 Salvia bowleyana HOM05D004891 ORTHO05D005997 4.0e-63 245.7 279 50.5
Sopen03g003400 Solanum pennellii HOM05D004891 ORTHO05D005997 4.0e-63 245.7 280 49.6
Actinidia34190 Actinidia chinensis HOM05D004891 ORTHO05D005997 6.7e-63 245.0 276 52.2
ClCG05G008660 Citrullus lanatus HOM05D004891 ORTHO05D005997 6.7e-63 245.0 273 52.7
Nn7g37380 Nelumbo nucifera HOM05D004891 ORTHO05D005997 6.7e-63 245.0 285 49.8
Nitab4.5_0000472g0010 Nicotiana tabacum HOM05D004891 ORTHO05D005997 1.1e-62 244.2 291 49.1
Sopen03g003460 Solanum pennellii HOM05D004891 ORTHO05D005997 1.1e-62 244.2 280 49.3
Psat6g039240 Pisum sativum HOM05D004891 ORTHO05D005997 1.5e-62 243.8 228 59.2
Sabra12G0021600 Salix brachista HOM05D004891 ORTHO05D005997 1.5e-62 243.8 351 43.3
MBI06_g22405_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D005997 2.0e-62 243.4 280 50.4
PGSC0003DMG400009098 Solanum tuberosum HOM05D004891 ORTHO05D005997 2.6e-62 243.0 279 49.5
FAN03G3090 Fragaria x ananassa HOM05D004891 ORTHO05D005997 4.4e-62 242.3 305 49.2
AUR62031485 Chenopodium quinoa HOM05D004891 ORTHO05D005997 5.7e-62 241.9 292 49.7
CiPaw.06G007100 Carya illinoinensis HOM05D004891 ORTHO05D005997 1.3e-61 240.7 282 51.8
PSO170G4664 Papaver somniferum HOM05D004891 ORTHO05D005997 1.3e-61 240.7 289 50.5
CAN.G108.22 Capsicum annuum HOM05D004891 ORTHO05D005997 6.3e-61 238.4 277 50.2
TWI14G0964 Tripterygium wilfordii HOM05D004891 ORTHO05D005997 6.3e-61 238.4 274 50.7
HanXRQChr14g0462811 Helianthus annuus HOM05D004891 ORTHO05D005997 1.8e-60 236.9 279 50.2
Lsat_1_v5_gn_2_134260 Lactuca sativa HOM05D004891 ORTHO05D005997 4.1e-60 235.7 282 51.4
MSTRG.8493 Avicennia marina HOM05D004891 ORTHO05D005997 2.0e-59 233.4 283 48.4
PGR142G0227 Punica granatum HOM05D004891 ORTHO05D005997 2.6e-59 233.0 279 50.5
CsaV3_3G021850 Cucumis sativus L. HOM05D004891 ORTHO05D005997 5.9e-59 231.9 277 50.9
MELO3C006974.2 Cucumis melo HOM05D004891 ORTHO05D005997 7.7e-59 231.5 280 50.4
Eucgr.K00322 Eucalyptus grandis HOM05D004891 ORTHO05D005997 2.2e-58 229.9 285 48.4
PSO063G3645 Papaver somniferum HOM05D004891 ORTHO05D005997 2.2e-58 229.9 290 49.0
Hund11687 Selenicereus undatus HOM05D004891 ORTHO05D005997 1.5e-57 227.3 268 50.0
ECA238G3691 Erigeron canadensis HOM05D004891 ORTHO05D005997 5.5e-57 225.3 283 47.3
Migut.F01055 Erythranthe guttata HOM05D004891 ORTHO05D005997 9.4e-57 224.6 279 50.2
Lj3A911G21 Lonicera japonica HOM05D004891 ORTHO05D005997 9.4e-57 224.6 323 44.3
Ah.07g206050 Amaranthus hybridus HOM05D004891 ORTHO05D005997 1.6e-56 223.8 278 52.2
Actinidia03156 Actinidia chinensis HOM05D004891 ORTHO05D005997 3.6e-56 222.6 276 49.3
Hund11688 Selenicereus undatus HOM05D004891 ORTHO05D005997 3.6e-56 222.6 268 48.9
Cc02_g01930 Coffea canephora HOM05D004891 ORTHO05D005997 1.8e-55 220.3 299 46.8
Oeu037109.1 Olea europaea HOM05D004891 ORTHO05D005997 2.3e-55 219.9 285 46.3
Sabra15G0017200 Salix brachista HOM05D004891 ORTHO05D005997 2.3e-55 219.9 317 43.2
Sc19g0001110 Simmondsia chinensis HOM05D004891 ORTHO05D005997 4.0e-55 219.2 273 50.9
EL10Ac3g05352 Beta vulgaris HOM05D004891 ORTHO05D005997 5.2e-55 218.8 282 47.5
Oeu024464.1 Olea europaea HOM05D004891 ORTHO05D005997 5.7e-54 215.3 288 45.5
Hund04825 Selenicereus undatus HOM05D004891 ORTHO05D005997 6.3e-53 211.8 269 46.8
Sed0007260 Sechium edule HOM05D004891 ORTHO05D005997 1.1e-52 211.1 270 45.9
Sed0021890 Sechium edule HOM05D004891 ORTHO05D005997 4.1e-52 209.1 271 46.9
AL8G27980 Arabidopsis lyrata HOM05D004891 ORTHO05D005997 7.0e-52 208.4 148 77.0
CDE10G0607 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 1.2e-51 207.6 278 44.2
HPP92_024018 Vanilla planifolia HOM05D004891 ORTHO05D005997 1.3e-50 204.1 283 44.5
CDE10G1089 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.9e-50 203.0 278 43.5
unitig_90.g27528 Utricularia gibba HOM05D004891 ORTHO05D005997 2.9e-50 203.0 267 44.9
ATR1093G054 Amborella trichopoda HOM05D004891 ORTHO05D005997 1.5e-49 200.7 296 43.2
Aqoxy5G04112 Aquilegia oxysepala HOM05D004891 ORTHO05D005997 2.5e-49 199.9 290 43.8
Dinv35303 Davidia involucrata HOM05D004891 ORTHO05D005997 1.6e-48 197.2 188 58.0
Actinidia34193 Actinidia chinensis HOM05D004891 ORTHO05D005997 1.4e-47 194.1 276 46.0
TAR374G1584 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.7e-42 177.2 175 53.1
vmacro06579 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 8.6e-42 174.9 474 31.0
Solyc03g007500.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 5.2e-39 165.6 136 63.2
Lj1C1012T12 Lonicera japonica HOM05D004891 ORTHO05D005997 8.9e-39 164.9 269 43.9
Solyc03g007440.4 Solanum lycopersicum HOM05D004891 ORTHO05D005997 2.0e-38 163.7 136 62.5
unitig_736.g22889 Utricularia gibba HOM05D004891 ORTHO05D005997 3.4e-38 162.9 281 40.6
vmacro23247 Vaccinium macrocarpon HOM05D004891 ORTHO05D005997 3.4e-38 162.9 505 29.1
Zm00001eb237900 Zea mays HOM05D004891 ORTHO05D005997 7.5e-38 161.8 218 44.0
Os01g0224200 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 1.4e-36 157.5 276 39.5
Peaxi162Scf00904g00326 Petunia axillaris HOM05D004891 ORTHO05D005997 1.4e-36 157.5 143 58.7
Ah.13g069830 Amaranthus hybridus HOM05D004891 ORTHO05D005997 2.4e-36 156.8 286 41.3
Atru.chr1.279 Acer truncatum HOM05D004891 ORTHO05D005997 2.9e-34 149.8 116 65.5
CSS0025805 Camellia sinensis var. sinensis HOM05D004891 ORTHO05D005997 3.9e-34 149.4 171 49.7
Os06g0506000 Oryza sativa ssp. japonica HOM05D004891 ORTHO05D005997 3.6e-32 142.9 271 36.9
AUR62021048 Chenopodium quinoa HOM05D004891 ORTHO05D005997 8.0e-32 141.7 175 46.9
DCAR_014529 Daucus carota HOM05D004891 ORTHO05D005997 8.3e-29 131.7 176 43.8
Zm00001eb338960 Zea mays HOM05D004891 ORTHO05D005997 1.1e-28 131.3 180 47.2
Thecc.01G303500 Theobroma cacao HOM05D004891 ORTHO05D005997 6.0e-27 125.6 101 62.4
MSTRG.23354 Avicennia marina HOM05D004891 ORTHO05D005997 1.6e-24 117.5 175 39.4
Zm00001eb203870 Zea mays HOM05D004891 ORTHO05D005997 8.1e-24 115.2 269 31.6
CDE02G0860 Ceratophyllum demersum HOM05D004891 ORTHO05D005997 2.0e-22 110.5 270 33.0
MSTRG.62 Avicennia marina HOM05D004891 ORTHO05D005997 2.6e-22 110.2 107 57.0
Oeu036884.1 Olea europaea HOM05D004891 ORTHO05D005997 3.4e-22 109.8 102 57.8
MBI06_g22406_MAGBIO Magnolia biondii HOM05D004891 ORTHO05D010341 8.3e-21 105.1 286 32.2
Oeu036883.1 Olea europaea HOM05D004891 ORTHO05D005997 9.2e-20 101.7 175 41.1
TAR629G2914 Trochodendron aralioides HOM05D004891 ORTHO05D005997 1.8e-15 87.4 162 36.4
Pp3c17_18860 Physcomitrium patens HOM05D001401 ORTHO05D006368 4.9e-13 79.3 146 37.7
AagrBONN_evm.TU.Sc2ySwM_228.2503 Anthoceros agrestis HOM05D001401 ORTHO05D006368 1.9e-12 77.4 159 35.8
Potri.009G111000 Populus trichocarpa HOM05D001401 ORTHO05D006368 3.2e-12 76.6 151 35.1
Pp3c2_5300 Physcomitrium patens HOM05D001401 ORTHO05D006368 5.4e-12 75.9 146 34.9
Mapoly0001s0328 Marchantia polymorpha HOM05D001401 ORTHO05D006368 7.1e-12 75.5 162 34.6
Pp3c22_17090 Physcomitrium patens HOM05D001401 ORTHO05D006368 7.8e-11 72.0 178 31.5
CBR_g41289 Chara braunii HOM05D004891 ORTHO05D006368 3.0e-10 70.1 188 34.0
Potri.004G149900 Populus trichocarpa HOM05D001401 ORTHO05D006368 5.1e-10 69.3 151 33.1
Zm00001eb192840 Zea mays HOM05D004891 ORTHO05D005997 1.5e-09 67.8 98 44.9
Sabra10G0105200 Salix brachista HOM05D004891 ORTHO05D005997 1.9e-09 67.4 71 56.3
Sabra15G0071500 Salix brachista HOM05D004891 ORTHO05D005997 1.9e-09 67.4 71 56.3
Manes.17G098401 Manihot esculenta HOM05D001401 ORTHO05D006368 2.5e-09 67.0 153 32.7
SEGI_14403 Sequoiadendron giganteum HOM05D001401 ORTHO05D006368 2.5e-09 67.0 105 39.0
ATR0733G254 Amborella trichopoda HOM05D001401 ORTHO05D006368 7.3e-09 65.5 144 31.2
Sabra09G0084600 Salix brachista HOM05D001401 ORTHO05D006368 1.6e-08 64.3 173 31.2
Pp3c19_14090 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.8e-08 63.5 171 30.4
Pp3c1_32220 Physcomitrium patens HOM05D001401 ORTHO05D006368 2.8e-08 63.5 149 32.2
SEGI_34742 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 3.6e-08 63.2 75 40.0
TAR629G2366 Trochodendron aralioides HOM05D008545 ORTHO05D010341 1.1e-07 61.6 280 26.4
Sabra12G0063200 Salix brachista HOM05D004891 ORTHO05D005997 1.8e-07 60.8 79 50.6
SEGI_25677 Sequoiadendron giganteum HOM05D004891 ORTHO05D005997 4.0e-07 59.7 77 39.0
Pp3c18_7150 Physcomitrium patens HOM05D001401 ORTHO05D006368 6.8e-07 58.9 171 29.8
Manes.15G147100 Manihot esculenta HOM05D001401 ORTHO05D006368 8.9e-07 58.5 155 32.3
Carub.0003s2988 Capsella rubella HOM05D001401 ORTHO05D006368 1.2e-06 58.2 98 36.7
FAN20G2914 Fragaria x ananassa HOM05D001401 ORTHO05D006368 2.0e-06 57.4 168 31.5
THA.LOC104807334 Tarenaya hassleriana HOM05D001401 ORTHO05D006368 2.0e-06 57.4 71 43.7
unitig_21.g20770 Utricularia gibba HOM05D000370 ORTHO05D001335 2.6e-06 57.0 150 32.7
CARHR106370 Cardamine hirsuta HOM05D001401 ORTHO05D006368 4.4e-06 56.2 78 39.7
Nn1g05138 Nelumbo nucifera HOM05D001401 ORTHO05D006368 5.8e-06 55.8 76 40.8
Nn5g29458 Nelumbo nucifera HOM05D001401 ORTHO05D006368 7.6e-06 55.5 141 32.6
Migut.N01216 Erythranthe guttata HOM05D001401 ORTHO05D006368 9.9e-06 55.1 164 30.5


User provided reference genes

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