Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g35274 Brassica carinata HOM05D005024 ORTHO05D006396 5.3e-284 980.3 489 100.0
Sp4g06550 Schrenkiella parvula HOM05D005024 ORTHO05D006396 6.4e-205 717.6 494 77.1
CARHR115110 Cardamine hirsuta HOM05D005024 ORTHO05D006396 1.2e-198 696.8 494 75.5
BcaC02g08288 Brassica carinata HOM05D005024 ORTHO05D006396 3.1e-191 672.2 506 72.7
AT2G26270 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 1.2e-190 670.2 510 72.5
BcaB06g28091 Brassica carinata HOM05D005024 ORTHO05D006396 4.5e-190 668.3 503 71.6
C04p56010 Brassica napus HOM05D005024 ORTHO05D006396 1.3e-189 666.8 506 72.5
BolC4t27134H Brassica oleracea HOM05D005024 ORTHO05D006396 1.3e-189 666.8 506 72.5
A04p20310 Brassica napus HOM05D005024 ORTHO05D006396 3.5e-187 658.7 503 70.8
BraA04t17610Z Brassica rapa HOM05D005024 ORTHO05D006396 3.5e-187 658.7 503 70.8
Aa31LG5G9530 Aethionema arabicum HOM05D005024 ORTHO05D006396 3.0e-170 602.4 511 66.1
THA.LOC104819895 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 4.1e-159 565.5 484 62.6
Thhalv10001999m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 1.5e-140 503.8 391 71.6
Carub.0004s0614 Capsella rubella HOM05D005024 ORTHO05D006396 2.3e-138 496.5 392 69.4
Gohir.D07G018500 Gossypium hirsutum HOM05D005024 ORTHO05D006396 2.5e-132 476.5 507 53.6
Gorai.001G019200 Gossypium raimondii HOM05D005024 ORTHO05D006396 7.3e-132 474.9 507 53.5
Gohir.A07G018700 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.2e-131 474.2 507 53.1
Eucgr.C00744 Eucalyptus grandis HOM05D005024 ORTHO05D006396 6.8e-130 468.4 509 51.9
Potri.006G218800 Populus trichocarpa HOM05D005024 ORTHO05D006396 1.3e-128 464.2 514 51.6
Manes.16G087100 Manihot esculenta HOM05D005024 ORTHO05D006396 9.2e-127 458.0 518 52.1
Duzib150G0504 Durio zibethinus HOM05D005024 ORTHO05D006396 3.5e-126 456.1 516 51.4
Duzib168G0917 Durio zibethinus HOM05D005024 ORTHO05D006396 4.6e-126 455.7 517 51.8
Gohir.A05G037800 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.3e-125 454.1 514 51.2
Dinv41847 Davidia involucrata HOM05D005024 ORTHO05D006396 1.7e-125 453.8 501 52.3
Ciclev10007934m.g Citrus clementina HOM05D005024 ORTHO05D006396 5.0e-125 452.2 518 50.0
Atru.chr7.1825 Acer truncatum HOM05D005024 ORTHO05D006396 8.6e-125 451.4 532 50.9
Gorai.009G039800 Gossypium raimondii HOM05D005024 ORTHO05D006396 8.6e-125 451.4 514 51.4
CSS0015942 Camellia sinensis var. sinensis HOM05D005024 ORTHO05D006396 4.3e-124 449.1 456 53.7
Manes.03G056600 Manihot esculenta HOM05D005024 ORTHO05D006396 9.5e-124 448.0 513 51.1
MD15G1047400 Malus domestica HOM05D005024 ORTHO05D006396 1.4e-122 444.1 516 50.4
PGR142G1044 Punica granatum HOM05D005024 ORTHO05D006396 4.0e-122 442.6 513 51.7
RcHm_v2.0_Chr6g0304801 Rosa chinensis HOM05D005024 ORTHO05D006396 6.8e-122 441.8 512 49.8
TWI34G1336 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 1.7e-120 437.2 508 49.4
ClCG08G009730 Citrullus lanatus HOM05D005024 ORTHO05D006396 1.4e-119 434.1 529 47.8
Sc23g0006070 Simmondsia chinensis HOM05D005024 ORTHO05D006396 1.4e-119 434.1 470 51.1
Lalb_Chr08g0244691 Lupinus albus HOM05D005024 ORTHO05D006396 1.2e-118 431.0 451 52.1
CiPaw.15G090700 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.7e-118 429.9 475 50.9
Medtr3g105400 Medicago truncatula HOM05D005024 ORTHO05D006396 4.6e-118 429.1 500 49.4
Nn8g38600 Nelumbo nucifera HOM05D005024 ORTHO05D006396 4.6e-118 429.1 515 48.3
arahy.Tifrunner.gnm1.ann1.JR430F Arachis hypogaea HOM05D005024 ORTHO05D006396 6.0e-118 428.7 506 49.2
Psat5g034920 Pisum sativum HOM05D005024 ORTHO05D006396 1.3e-117 427.6 504 48.4
Ca_15807_v3 Cicer arietinum L. HOM05D005024 ORTHO05D006396 1.7e-117 427.2 492 50.0
MD08G1046400 Malus domestica HOM05D005024 ORTHO05D006396 1.7e-117 427.2 532 48.1
Migut.A00327 Erythranthe guttata HOM05D005024 ORTHO05D006396 6.6e-117 425.2 497 48.7
FvH4_2g36960 Fragaria vesca HOM05D005024 ORTHO05D006396 1.1e-116 424.5 512 48.2
arahy.Tifrunner.gnm1.ann1.Q4799Z Arachis hypogaea HOM05D005024 ORTHO05D006396 3.3e-116 422.9 506 48.8
COL.COLO4_21162 Corchorus olitorius HOM05D005024 ORTHO05D006396 5.6e-116 422.2 506 49.6
TWI63G0562 Tripterygium wilfordii HOM05D005024 ORTHO05D006396 5.6e-116 422.2 508 48.0
FAN15G2531 Fragaria x ananassa HOM05D005024 ORTHO05D006396 7.3e-116 421.8 560 45.5
MELO3C011496.2 Cucumis melo HOM05D005024 ORTHO05D006396 1.2e-115 421.0 521 46.8
Glyma.06G058100 Glycine max HOM05D005024 ORTHO05D006396 1.6e-115 420.6 503 47.1
Lalb_Chr23g0268051 Lupinus albus HOM05D005024 ORTHO05D006396 1.6e-115 420.6 441 51.7
Lj1g0011589 Lotus japonicus HOM05D005024 ORTHO05D006396 3.6e-115 419.5 495 48.9
Sed0007384 Sechium edule HOM05D005024 ORTHO05D006396 6.2e-115 418.7 560 46.2
Glyma.04G057500 Glycine max HOM05D005024 ORTHO05D006396 2.3e-114 416.8 459 50.8
VMungo1309G0309 Vigna mungo HOM05D005024 ORTHO05D006396 4.0e-114 416.0 502 47.6
Cc08_g06760 Coffea canephora HOM05D005024 ORTHO05D006396 5.2e-114 415.6 467 49.0
FAN27G2149 Fragaria x ananassa HOM05D005024 ORTHO05D006396 8.9e-114 414.8 549 45.7
Oeu045334.2 Olea europaea HOM05D005024 ORTHO05D006396 1.1e-111 407.9 498 48.4
HanXRQChr03g0067181 Helianthus annuus HOM05D005024 ORTHO05D006396 1.9e-111 407.1 461 48.4
FAN20G2081 Fragaria x ananassa HOM05D005024 ORTHO05D006396 5.4e-111 405.6 564 44.5
ECA240G2599 Erigeron canadensis HOM05D005024 ORTHO05D006396 1.2e-110 404.4 453 49.9
PSO401G0002 Papaver somniferum HOM05D005024 ORTHO05D006396 1.6e-110 404.1 523 45.3
SalBow4G3344 Salvia bowleyana HOM05D005024 ORTHO05D006396 4.6e-110 402.5 547 44.1
PSO724G1181 Papaver somniferum HOM05D005024 ORTHO05D006396 6.0e-110 402.1 519 45.1
DCAR_001244 Daucus carota HOM05D005024 ORTHO05D006396 1.0e-109 401.4 516 45.2
Nitab4.5_0004346g0050 Nicotiana tabacum HOM05D005024 ORTHO05D006396 3.9e-109 399.4 503 45.7
Sabra06G0168600 Salix brachista HOM05D005024 ORTHO05D006396 3.9e-109 399.4 534 46.1
Aqoxy4G00037 Aquilegia oxysepala HOM05D005024 ORTHO05D006396 5.1e-109 399.1 461 49.2
PSO789G0001 Papaver somniferum HOM05D005024 ORTHO05D006396 5.1e-109 399.1 525 45.1
MSTRG.11771 Avicennia marina HOM05D005024 ORTHO05D006396 2.5e-108 396.7 459 47.7
Gohir.D05G039300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 3.6e-107 392.9 513 46.8
Gohir.D08G268300 Gossypium hirsutum HOM05D005024 ORTHO05D006396 4.7e-107 392.5 515 46.2
Gorai.004G286000 Gossypium raimondii HOM05D005024 ORTHO05D006396 1.4e-106 391.0 515 46.2
Phvul.009G083900 Phaseolus vulgaris HOM05D005024 ORTHO05D006396 2.9e-104 383.3 436 48.6
Os09g0440200 Oryza sativa ssp. japonica HOM05D005024 ORTHO05D006396 3.7e-104 382.9 514 44.0
GSVIVG01035495001 Vitis vinifera HOM05D005024 ORTHO05D006396 9.2e-103 378.3 414 51.2
Nitab4.5_0000508g0040 Nicotiana tabacum HOM05D005024 ORTHO05D006396 7.8e-102 375.2 498 43.6
Lsat_1_v5_gn_7_59161 Lactuca sativa HOM05D005024 ORTHO05D006396 6.6e-101 372.1 452 47.3
Zm00001eb314080 Zea mays HOM05D005024 ORTHO05D006396 4.3e-100 369.4 522 41.4
Solyc08g067240.4 Solanum lycopersicum HOM05D005024 ORTHO05D006396 3.1e-98 363.2 491 44.0
Sopen08g021170 Solanum pennellii HOM05D005024 ORTHO05D006396 6.8e-98 362.1 396 48.5
CsaV3_6G031850 Cucumis sativus L. HOM05D005024 ORTHO05D006396 4.4e-97 359.4 406 49.8
Prupe.1G401800 Prunus persica HOM05D005024 ORTHO05D006396 2.9e-96 356.7 518 44.4
ECA236G2474 Erigeron canadensis HOM05D005024 ORTHO05D006396 5.4e-95 352.4 481 43.7
SEGI_27832 Sequoiadendron giganteum HOM05D005024 ORTHO05D006396 7.1e-95 352.1 486 43.0
EL10Ac2g02404 Beta vulgaris HOM05D005024 ORTHO05D006396 1.6e-94 350.9 522 41.0
THA.LOC104810953 Tarenaya hassleriana HOM05D005024 ORTHO05D006396 1.5e-92 344.4 495 42.2
HanXRQChr05g0136401 Helianthus annuus HOM05D005024 ORTHO05D006396 1.3e-91 341.3 530 40.4
MSTRG.25847 Avicennia marina HOM05D005024 ORTHO05D006396 2.1e-91 340.5 464 42.7
CiPaw.05G157300 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.8e-91 340.1 503 43.5
AT3G43930 Arabidopsis thaliana HOM05D005024 ORTHO05D006396 6.2e-91 339.0 489 42.9
AL5G21960 Arabidopsis lyrata HOM05D005024 ORTHO05D006396 1.2e-89 334.7 470 43.2
Cpa.g.sc82.16 Carica papaya HOM05D005024 ORTHO05D006396 5.8e-89 332.4 377 50.4
MBI19_g09934_MAGBIO Magnolia biondii HOM05D005024 ORTHO05D006396 4.2e-87 326.2 506 41.7
Lj7C207G3 Lonicera japonica HOM05D005024 ORTHO05D006396 3.5e-86 323.2 459 43.1
Oeu030211.1 Olea europaea HOM05D005024 ORTHO05D006396 2.3e-85 320.5 463 42.3
TAR624G0706 Trochodendron aralioides HOM05D005024 ORTHO05D006396 4.8e-83 312.8 447 43.2
Thhalv10011063m.g Eutrema salsugineum HOM05D005024 ORTHO05D006396 2.0e-81 307.4 498 40.8
ATR0053G058 Amborella trichopoda HOM05D005024 ORTHO05D006396 4.5e-81 306.2 417 44.1
Ah.07g205360 Amaranthus hybridus HOM05D005024 ORTHO05D006396 1.3e-80 304.7 480 41.5
Gohir.A08G247100 Gossypium hirsutum HOM05D005024 ORTHO05D006396 1.3e-80 304.7 398 46.0
PGSC0003DMG400007379 Solanum tuberosum HOM05D005024 ORTHO05D006396 1.3e-80 304.7 312 51.6
Thecc.09G065700 Theobroma cacao HOM05D005024 ORTHO05D006396 2.2e-80 303.9 365 48.8
SMO169G0310 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 3.5e-78 296.6 495 38.6
SGA_v2.0_scaffold147G36313 Striga asiatica HOM05D005024 ORTHO05D006396 1.0e-77 295.0 476 41.2
Pp3c6_19110 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.3e-75 288.1 483 37.7
HPP92_013024 Vanilla planifolia HOM05D005024 ORTHO05D006396 2.0e-73 280.8 391 43.2
AagrBONN_evm.TU.Sc2ySwM_228.2412 Anthoceros agrestis HOM05D005024 ORTHO05D006396 2.2e-72 277.3 461 36.7
Peaxi162Scf00922g00210 Petunia axillaris HOM05D005024 ORTHO05D006396 8.4e-72 275.4 402 41.0
Rhsim06G0092200 Rhododendron simsii HOM05D005024 ORTHO05D006396 6.0e-70 269.2 462 37.9
AUR62020277 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.0e-69 268.5 418 40.7
Pp3c3_23860 Physcomitrium patens HOM05D005024 ORTHO05D006396 1.1e-68 265.0 494 35.6
AUR62037728 Chenopodium quinoa HOM05D005024 ORTHO05D006396 1.0e-64 251.9 290 46.9
CBR_g17947 Chara braunii HOM05D005024 ORTHO05D006396 4.6e-62 243.0 507 33.9
SHI28014 Sapria himalayana HOM05D005024 ORTHO05D006396 4.8e-59 233.0 416 37.3
vmacro21130 Vaccinium macrocarpon HOM05D005024 ORTHO05D006396 2.6e-57 227.3 301 43.2
Lsat_1_v5_gn_8_70380 Lactuca sativa HOM05D005024 ORTHO05D006396 7.7e-57 225.7 402 39.6
TPR.G31221 Trifolium pratense HOM05D005024 ORTHO05D006396 1.4e-53 214.9 183 61.2
CDE07G0506 Ceratophyllum demersum HOM05D005024 ORTHO05D006396 2.0e-52 211.1 339 38.3
CiPaw.05G156800 Carya illinoinensis HOM05D005024 ORTHO05D006396 2.8e-51 207.2 233 51.5
unitig_46.g18535 Utricularia gibba HOM05D005024 ORTHO05D006396 4.2e-47 193.4 316 38.3
Rhsim06G0128300 Rhododendron simsii HOM05D005024 ORTHO05D006396 1.8e-45 188.0 367 34.3
Haze_18325 Corylus avellana HOM05D005024 ORTHO05D006396 9.7e-44 182.2 403 35.5
Carub.0004s0613 Capsella rubella HOM05D005024 ORTHO05D006396 6.1e-30 136.3 103 71.8
CAN.G348.11 Capsicum annuum HOM05D005024 ORTHO05D006396 6.8e-29 132.9 283 33.2
Carub.0005s0971 Capsella rubella HOM05D005024 ORTHO05D006396 8.3e-27 125.9 145 45.5
unitig_46.g18534 Utricularia gibba HOM05D005024 ORTHO05D006396 4.1e-26 123.6 113 55.8
TPR.G3563 Trifolium pratense HOM05D005024 ORTHO05D006396 1.7e-24 118.2 118 54.2
SMO336G0001 Selaginella moellendorffii HOM05D005024 ORTHO05D006396 1.1e-23 115.5 356 28.7
TPR.G26130 Trifolium pratense HOM05D005024 ORTHO05D006396 5.5e-23 113.2 88 63.6
CBR_g899 Chara braunii HOM05D005024 ORTHO05D006396 3.5e-17 94.0 81 55.6
PSO198G0133 Papaver somniferum HOM05D005024 ORTHO05D006396 7.8e-17 92.8 73 64.4
GSVIVG01035496001 Vitis vinifera HOM05D005024 ORTHO05D006396 1.0e-13 82.4 55 69.1
SHI08483 Sapria himalayana HOM05D005024 ORTHO05D006396 3.0e-13 80.9 190 28.4
ATR0053G014 Amborella trichopoda HOM05D005024 ORTHO05D006396 7.5e-12 76.3 50 72.0
TPR.G26129 Trifolium pratense HOM05D005024 ORTHO05D006396 2.2e-11 74.7 60 61.7
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 5.4e-10 70.1 135 34.8
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 7.0e-10 69.7 138 34.1
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 9.2e-10 69.3 96 39.6
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 3.5e-09 67.4 136 33.8
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 3.5e-09 67.4 161 31.1
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 5.9e-09 66.6 135 33.3
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 5.9e-09 66.6 103 35.0
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 7.8e-09 66.2 125 35.2
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 7.8e-09 66.2 160 31.9
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.3e-08 64.7 96 35.4
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 3.0e-08 64.3 95 36.8
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 5.0e-08 63.5 161 29.8
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 1.1e-07 62.4 95 33.7
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 1.5e-07 62.0 96 35.4
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 1.5e-07 62.0 109 35.8
Atru.chr13.1560 Acer truncatum HOM05D001245 ORTHO05D004475 1.9e-07 61.6 96 34.4
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 5.6e-07 60.1 95 34.7
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 5.6e-07 60.1 95 34.7
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 7.3e-07 59.7 169 27.2
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 9.5e-07 59.3 81 42.0
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 9.5e-07 59.3 127 31.5
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 1.2e-06 58.9 96 33.3
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 1.2e-06 58.9 95 34.7
AL2G37520 Arabidopsis lyrata HOM05D001245 ORTHO05D004475 1.6e-06 58.5 86 36.0
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 1.6e-06 58.5 133 31.6
Nn1g08963 Nelumbo nucifera HOM05D001245 ORTHO05D004475 1.6e-06 58.5 96 36.5
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 2.1e-06 58.2 91 38.5
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.1e-06 58.2 159 28.9
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 2.1e-06 58.2 159 28.9
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 2.8e-06 57.8 95 34.7
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 3.6e-06 57.4 147 27.2
Zm00001eb091010 Zea mays HOM05D001245 ORTHO05D004475 3.6e-06 57.4 201 27.9
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 4.7e-06 57.0 87 37.9
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 4.7e-06 57.0 132 31.1
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 8.0e-06 56.2 89 37.1


User provided reference genes

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