Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g34571 Brassica carinata HOM05D004505 ORTHO05D005249 3.9e-201 704.5 342 100.0
BcaB07g31805 Brassica carinata HOM05D004505 ORTHO05D005249 4.8e-191 671.0 342 94.2
BcaC04g23063 Brassica carinata HOM05D004505 ORTHO05D005249 6.1e-186 654.1 343 92.1
C09p12500 Brassica napus HOM05D004505 ORTHO05D005249 1.8e-185 652.5 343 91.8
Thhalv10022769m.g Eutrema salsugineum HOM05D004505 ORTHO05D005249 1.2e-184 649.8 342 91.2
A09p10570 Brassica napus HOM05D004505 ORTHO05D005249 1.8e-182 642.5 335 92.8
BraA09t36699Z Brassica rapa HOM05D004505 ORTHO05D005249 3.1e-182 641.7 335 92.5
BolC9t54145H Brassica oleracea HOM05D004505 ORTHO05D005249 5.3e-182 641.0 335 91.9
Carub.0003s2884 Capsella rubella HOM05D004505 ORTHO05D005249 1.3e-180 636.3 344 89.2
AL3G46600 Arabidopsis lyrata HOM05D004505 ORTHO05D005249 2.2e-180 635.6 344 89.2
AT2G14835 Arabidopsis thaliana HOM05D004505 ORTHO05D005249 1.9e-179 632.5 344 88.4
C07p08850 Brassica napus HOM05D004505 ORTHO05D005249 6.1e-178 627.5 342 88.3
BolC7t41299H Brassica oleracea HOM05D004505 ORTHO05D005249 6.1e-178 627.5 342 88.3
CARHR284820 Cardamine hirsuta HOM05D004505 ORTHO05D005249 6.1e-178 627.5 344 88.1
BcaC06g36021 Brassica carinata HOM05D004505 ORTHO05D005249 3.0e-177 625.2 342 88.3
A03p45290 Brassica napus HOM05D004505 ORTHO05D005249 3.0e-177 625.2 334 91.6
BraA07t28342Z Brassica rapa HOM05D004505 ORTHO05D005249 8.8e-177 623.6 342 88.6
Aa31LG8G12900 Aethionema arabicum HOM05D004505 ORTHO05D005249 6.5e-172 607.4 342 86.5
BcaC01g03086 Brassica carinata HOM05D004505 ORTHO05D005249 5.7e-168 594.3 342 86.0
BraA03t13662Z Brassica rapa HOM05D004505 ORTHO05D005249 4.1e-166 588.2 321 90.0
THA.LOC104819533 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 4.1e-158 561.6 351 79.8
Sp3g28090 Schrenkiella parvula HOM05D004505 ORTHO05D005249 7.0e-158 560.8 342 81.0
THA.LOC104807219 Tarenaya hassleriana HOM05D004505 ORTHO05D005249 6.6e-156 554.3 352 78.1
COL.COLO4_32526 Corchorus olitorius HOM05D004505 ORTHO05D005249 1.3e-140 503.4 351 71.2
Atru.chr5.2374 Acer truncatum HOM05D004505 ORTHO05D005249 5.1e-140 501.5 345 74.2
Manes.10G082600 Manihot esculenta HOM05D004505 ORTHO05D005249 6.6e-140 501.1 344 73.0
Thecc.02G115800 Theobroma cacao HOM05D004505 ORTHO05D005249 3.3e-139 498.8 352 71.6
Ciclev10028799m.g Citrus clementina HOM05D004505 ORTHO05D005249 1.6e-138 496.5 346 71.7
CiPaw.05G016900 Carya illinoinensis HOM05D004505 ORTHO05D005249 1.8e-137 493.0 356 70.2
Lalb_Chr06g0165181 Lupinus albus HOM05D004505 ORTHO05D005249 5.2e-137 491.5 344 70.9
Lalb_Chr02g0145031 Lupinus albus HOM05D004505 ORTHO05D005249 6.8e-137 491.1 344 70.9
VMungo0720G1717 Vigna mungo HOM05D004505 ORTHO05D005249 2.0e-136 489.6 342 71.6
Duzib052G0917 Durio zibethinus HOM05D004505 ORTHO05D005249 2.6e-136 489.2 351 71.2
Lj5g0022267 Lotus japonicus HOM05D004505 ORTHO05D005249 9.9e-136 487.3 343 71.1
TWI59G0623 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 2.9e-135 485.7 358 70.4
Phvul.007G044800 Phaseolus vulgaris HOM05D004505 ORTHO05D005249 3.8e-135 485.3 342 71.1
Cfa004636 Carpinus fangiana HOM05D004505 ORTHO05D005249 4.9e-135 485.0 356 69.1
TWI59G0705 Tripterygium wilfordii HOM05D004505 ORTHO05D005249 1.9e-134 483.0 357 69.5
Dinv15801 Davidia involucrata HOM05D004505 ORTHO05D005249 3.2e-134 482.3 354 69.2
Glyma.10G257600 Glycine max HOM05D004505 ORTHO05D005249 3.2e-134 482.3 342 69.9
arahy.Tifrunner.gnm1.ann1.9IEF3S Arachis hypogaea HOM05D004505 ORTHO05D005249 5.4e-134 481.5 343 69.4
ClCG02G006770 Citrullus lanatus HOM05D004505 ORTHO05D005249 5.4e-134 481.5 354 67.8
arahy.Tifrunner.gnm1.ann1.PUJ79J Arachis hypogaea HOM05D004505 ORTHO05D005249 7.1e-134 481.1 343 69.4
Glyma.20G133500 Glycine max HOM05D004505 ORTHO05D005249 9.2e-134 480.7 343 70.8
GSVIVG01037847001 Vitis vinifera HOM05D004505 ORTHO05D005249 9.2e-134 480.7 360 69.2
Gorai.002G010200 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.1e-133 479.6 348 68.7
Gohir.D01G008500 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.7e-133 479.2 348 68.7
Potri.009G089100 Populus trichocarpa HOM05D004505 ORTHO05D005249 4.6e-133 478.4 346 71.1
Medtr1g106530 Medicago truncatula HOM05D004505 ORTHO05D005249 1.3e-132 476.9 344 69.8
CsaV3_7G007870 Cucumis sativus L. HOM05D004505 ORTHO05D005249 1.7e-132 476.5 354 67.2
Duzib132G0172 Durio zibethinus HOM05D004505 ORTHO05D005249 1.7e-132 476.5 350 68.9
Prupe.8G143400 Prunus persica HOM05D004505 ORTHO05D005249 2.3e-132 476.1 355 69.9
CiPaw.06G166100 Carya illinoinensis HOM05D004505 ORTHO05D005249 3.9e-132 475.3 349 69.6
CSS0013373 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.1e-132 474.9 353 69.1
CSS0020041 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 5.1e-132 474.9 353 69.1
Sabra09G0069000 Salix brachista HOM05D004505 ORTHO05D005249 1.5e-131 473.4 355 68.5
Eucgr.I01070 Eucalyptus grandis HOM05D004505 ORTHO05D005249 1.9e-131 473.0 345 68.7
Potri.001G294200 Populus trichocarpa HOM05D004505 ORTHO05D005249 2.5e-131 472.6 345 71.3
MELO3C018515.2 Cucumis melo HOM05D004505 ORTHO05D005249 4.3e-131 471.9 354 67.2
Duzib248G0916 Durio zibethinus HOM05D004505 ORTHO05D005249 5.6e-131 471.5 337 70.9
SGA_v2.0_scaffold225G43031 Striga asiatica HOM05D004505 ORTHO05D005249 7.3e-131 471.1 353 68.0
Dinv42232 Davidia involucrata HOM05D004505 ORTHO05D005249 2.1e-130 469.5 354 68.6
Gohir.A01G008800 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.1e-130 469.5 348 67.5
Gorai.005G232000 Gossypium raimondii HOM05D004505 ORTHO05D005249 2.8e-130 469.2 352 67.9
QL11p030661 Quercus lobata HOM05D004505 ORTHO05D005249 1.1e-129 467.2 354 68.1
Migut.B00442 Erythranthe guttata HOM05D004505 ORTHO05D005249 1.8e-129 466.5 353 66.3
TPR.G27082 Trifolium pratense HOM05D004505 ORTHO05D005249 2.4e-129 466.1 343 67.1
MSTRG.16682 Avicennia marina HOM05D004505 ORTHO05D005249 3.1e-129 465.7 355 66.8
TAR376G1041 Trochodendron aralioides HOM05D004505 ORTHO05D005249 3.1e-129 465.7 372 65.3
Actinidia00379 Actinidia chinensis HOM05D004505 ORTHO05D005249 5.2e-129 464.9 350 67.4
PSO541G1690 Papaver somniferum HOM05D004505 ORTHO05D005249 5.2e-129 464.9 350 67.1
FvH4_2g04180 Fragaria vesca HOM05D004505 ORTHO05D005249 1.2e-128 463.8 346 69.4
Nn1g04588 Nelumbo nucifera HOM05D004505 ORTHO05D005249 1.2e-128 463.8 372 66.1
CANSAT25G1536 Cannabis sativa HOM05D004505 ORTHO05D005249 2.6e-128 462.6 353 68.0
Sed0021181 Sechium edule HOM05D004505 ORTHO05D005249 2.6e-128 462.6 355 65.4
MD05G1098600 Malus domestica HOM05D004505 ORTHO05D005249 3.4e-128 462.2 362 66.6
PSO675G5357 Papaver somniferum HOM05D004505 ORTHO05D005249 3.4e-128 462.2 350 67.4
Gohir.D02G204700 Gossypium hirsutum HOM05D004505 ORTHO05D005249 4.4e-128 461.8 352 67.0
Psat6g215360 Pisum sativum HOM05D004505 ORTHO05D005249 4.4e-128 461.8 340 68.5
Nn5g30556 Nelumbo nucifera HOM05D004505 ORTHO05D005249 9.9e-128 460.7 374 63.1
Gohir.A12G020000 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.8e-127 458.8 346 68.2
CSS0024925 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 4.9e-127 458.4 354 66.7
Ah.09g231890 Amaranthus hybridus HOM05D004505 ORTHO05D005249 2.4e-126 456.1 350 67.1
C03p56140 Brassica napus HOM05D004505 ORTHO05D005249 4.2e-126 455.3 336 69.9
Actinidia04381 Actinidia chinensis HOM05D004505 ORTHO05D005249 7.1e-126 454.5 359 65.7
Gohir.A03G183100 Gossypium hirsutum HOM05D004505 ORTHO05D005249 2.7e-125 452.6 349 66.2
Gohir.D12G020200 Gossypium hirsutum HOM05D004505 ORTHO05D005249 3.5e-125 452.2 345 66.7
RcHm_v2.0_Chr6g0253531 Rosa chinensis HOM05D004505 ORTHO05D005249 7.8e-125 451.1 373 64.6
EL10Ac8g19380 Beta vulgaris HOM05D004505 ORTHO05D005249 1.0e-124 450.7 347 66.3
TAR628G1542 Trochodendron aralioides HOM05D004505 ORTHO05D005249 1.0e-124 450.7 376 62.8
SalBow3G2441 Salvia bowleyana HOM05D004505 ORTHO05D005249 2.3e-124 449.5 347 65.7
Gorai.008G020600 Gossypium raimondii HOM05D004505 ORTHO05D005249 3.9e-124 448.7 345 66.4
Sc08g0004630 Simmondsia chinensis HOM05D004505 ORTHO05D005249 3.3e-123 445.7 350 65.4
CAN.G606.52 Capsicum annuum HOM05D004505 ORTHO05D005249 2.8e-122 442.6 351 64.1
MD10G1104500 Malus domestica HOM05D004505 ORTHO05D005249 1.5e-120 436.8 365 63.8
Aqoxy6G02689 Aquilegia oxysepala HOM05D004505 ORTHO05D005249 2.0e-120 436.4 353 64.0
Cc02_g19770 Coffea canephora HOM05D004505 ORTHO05D005249 2.0e-120 436.4 354 63.6
Lsat_1_v5_gn_7_85241 Lactuca sativa HOM05D004505 ORTHO05D005249 9.9e-120 434.1 342 63.2
Oeu011137.2 Olea europaea HOM05D004505 ORTHO05D005249 9.9e-120 434.1 347 64.8
Solyc01g107150.3 Solanum lycopersicum HOM05D004505 ORTHO05D005249 9.9e-120 434.1 353 62.6
PGSC0003DMG400025845 Solanum tuberosum HOM05D004505 ORTHO05D005249 1.3e-119 433.7 353 62.6
Sopen01g049410 Solanum pennellii HOM05D004505 ORTHO05D005249 2.9e-119 432.6 353 62.3
Hma1.2p1_1773F.1_g301730 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.2e-117 427.2 366 61.7
HanXRQChr16g0509281 Helianthus annuus HOM05D004505 ORTHO05D005249 3.5e-117 425.6 343 63.3
ECA236G1323 Erigeron canadensis HOM05D004505 ORTHO05D005249 7.9e-117 424.5 343 62.4
FAN20G1406 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-116 424.1 349 64.5
CDE04G2422 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 5.6e-115 418.3 375 58.7
DCAR_001686 Daucus carota HOM05D004505 ORTHO05D005249 2.1e-114 416.4 352 61.1
HanXRQChr04g0128621 Helianthus annuus HOM05D004505 ORTHO05D005249 2.8e-114 416.0 342 62.9
FAN24G0885 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.3e-113 411.8 346 64.2
Sc14g0002880 Simmondsia chinensis HOM05D004505 ORTHO05D005249 9.0e-113 411.0 323 64.7
AUR62034088 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.5e-112 410.2 343 62.4
ATR0208G025 Amborella trichopoda HOM05D004505 ORTHO05D005249 2.9e-111 406.0 373 58.4
Peaxi162Scf00016g02841 Petunia axillaris HOM05D004505 ORTHO05D005249 1.1e-110 404.1 350 60.9
unitig_8.g3418 Utricularia gibba HOM05D004505 ORTHO05D005249 2.7e-109 399.4 364 56.3
FAN15G2339 Fragaria x ananassa HOM05D004505 ORTHO05D005249 5.1e-108 395.2 372 59.4
Os10g0346200 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 1.5e-107 393.7 365 56.2
Sabra16G0184400 Salix brachista HOM05D004505 ORTHO05D005249 1.5e-107 393.7 325 64.6
Lj5A218T89 Lonicera japonica HOM05D004505 ORTHO05D005249 3.3e-107 392.5 329 63.2
SGA_v2.0_scaffold32G13000 Striga asiatica HOM05D004505 ORTHO05D005249 7.4e-107 391.3 419 52.5
Sed0004146 Sechium edule HOM05D004505 ORTHO05D005249 1.1e-105 387.5 354 58.8
AUR62042991 Chenopodium quinoa HOM05D004505 ORTHO05D005249 1.8e-105 386.7 308 64.0
HPP92_019613 Vanilla planifolia HOM05D004505 ORTHO05D005249 4.5e-104 382.1 355 57.7
Oeu021363.2 Olea europaea HOM05D004505 ORTHO05D005249 1.0e-103 380.9 525 45.1
Lsat_1_v5_gn_9_111801 Lactuca sativa HOM05D004505 ORTHO05D005249 3.8e-103 379.0 342 58.5
vmacro01967 Vaccinium macrocarpon HOM05D004505 ORTHO05D005249 7.9e-101 371.3 333 58.3
unitig_22.g6841 Utricularia gibba HOM05D004505 ORTHO05D005249 6.7e-100 368.2 364 53.8
CDE02G3713 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 9.0e-97 357.8 326 59.2
SEGI_16422 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 3.8e-95 352.4 366 53.8
RhsimUnG0124800 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.1e-94 350.9 430 48.6
Rhsim11G0153600 Rhododendron simsii HOM05D004505 ORTHO05D005249 1.1e-91 340.9 412 48.5
BolC3t17904H Brassica oleracea HOM05D004505 ORTHO05D005249 1.5e-91 340.5 171 91.8
Nitab4.5_0012134g0030 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.9e-86 323.6 369 50.4
Nitab4.5_0001105g0100 Nicotiana tabacum HOM05D004505 ORTHO05D005249 1.0e-84 317.8 316 55.4
DCAR_029121 Daucus carota HOM05D004505 ORTHO05D005249 8.2e-82 308.1 340 50.9
Mapoly0069s0035 Marchantia polymorpha HOM05D004505 ORTHO05D005249 1.5e-80 303.9 391 45.8
AagrBONN_evm.TU.Sc2ySwM_344.967 Anthoceros agrestis HOM05D004505 ORTHO05D005249 1.4e-78 297.4 366 47.5
TAR381G0366 Trochodendron aralioides HOM05D004505 ORTHO05D005249 2.3e-76 290.0 232 62.1
PGR120G0009 Punica granatum HOM05D004505 ORTHO05D005249 2.5e-70 270.0 237 59.5
PGR142G4060 Punica granatum HOM05D004505 ORTHO05D005249 2.5e-70 270.0 237 59.5
Cpa.g.sc106.58 Carica papaya HOM05D004505 ORTHO05D005249 3.2e-70 269.6 226 66.4
Pp3c17_14720 Physcomitrium patens HOM05D004505 ORTHO05D005249 5.3e-65 252.3 379 40.6
Pp3c14_26740 Physcomitrium patens HOM05D004505 ORTHO05D005249 2.7e-64 250.0 361 42.9
Ah.14g085580 Amaranthus hybridus HOM05D004505 ORTHO05D005249 5.5e-62 242.3 303 50.5
SMO361G0125 Selaginella moellendorffii HOM05D004505 ORTHO05D005249 4.7e-61 239.2 350 42.9
FAN27G0277 Fragaria x ananassa HOM05D004505 ORTHO05D005249 1.0e-60 238.0 215 63.3
Zm00001eb027340 Zea mays HOM05D004505 ORTHO05D005249 1.4e-60 237.7 202 55.0
CBR_g49762 Chara braunii HOM05D004505 ORTHO05D005249 3.1e-57 226.5 397 39.0
Actinidia34364 Actinidia chinensis HOM05D004505 ORTHO05D005249 1.1e-54 218.0 215 58.1
Ca_11038_v3 Cicer arietinum L. HOM05D004505 ORTHO05D005249 1.5e-54 217.6 189 59.3
Haze_10232 Corylus avellana HOM05D004505 ORTHO05D005249 1.6e-45 187.6 135 72.6
Oeu021361.1 Olea europaea HOM05D004505 ORTHO05D005249 2.1e-45 187.2 173 61.3
SHI05076 Sapria himalayana HOM05D004505 ORTHO05D005249 1.2e-37 161.4 133 56.4
SEGI_28007 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 1.7e-34 151.0 361 31.6
SEGI_05182 Sequoiadendron giganteum HOM05D004505 ORTHO05D005249 4.9e-34 149.4 337 33.2
BcaC01g03087 Brassica carinata HOM05D004505 ORTHO05D005249 1.9e-33 147.5 71 87.3
CSS0037250 Camellia sinensis var. sinensis HOM05D004505 ORTHO05D005249 2.1e-29 134.0 121 57.0
Hma1.2p1_1023F.1_g248820 Hydrangea macrophylla HOM05D004505 ORTHO05D005249 1.1e-28 131.7 104 62.5
Haze_06953 Corylus avellana HOM05D067758 ORTHO05D005249 6.0e-16 89.4 84 59.5
CDE07G0293 Ceratophyllum demersum HOM05D004505 ORTHO05D005249 8.1e-13 79.0 63 65.1
Os10g0172600 Oryza sativa ssp. japonica HOM05D004505 ORTHO05D005249 6.0e-08 62.8 33 75.8


User provided reference genes

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