Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g33237 Brassica carinata HOM05D008968 ORTHO05D012182 1.1e-43 179.5 82 100.0
A06p00390 Brassica napus HOM05D008968 ORTHO05D012182 2.1e-39 165.2 82 92.7
BolC6t36084H Brassica oleracea HOM05D008968 ORTHO05D012182 1.0e-38 162.9 82 90.2
BcaC08g43607 Brassica carinata HOM05D008968 ORTHO05D012182 3.0e-38 161.4 82 90.2
C06p10100 Brassica napus HOM05D008968 ORTHO05D012182 3.0e-38 161.4 82 90.2
Thhalv10012111m.g Eutrema salsugineum HOM05D008968 ORTHO05D012182 1.1e-37 159.5 82 86.6
Sp1g40760 Schrenkiella parvula HOM05D008968 ORTHO05D012182 2.1e-36 155.2 82 85.4
BcaB04g16993 Brassica carinata HOM05D008968 ORTHO05D012182 9.0e-35 149.8 82 82.9
CARHR044690 Cardamine hirsuta HOM05D008968 ORTHO05D012182 2.2e-33 145.2 83 81.9
AL1G63090 Arabidopsis lyrata HOM05D008968 ORTHO05D012182 3.8e-33 144.4 82 76.8
A08p00960 Brassica napus HOM05D008968 ORTHO05D012182 8.4e-33 143.3 82 79.3
BraA08t32151Z Brassica rapa HOM05D008968 ORTHO05D012182 8.4e-33 143.3 82 79.3
BcaB06g28097 Brassica carinata HOM05D008968 ORTHO05D012182 1.1e-32 142.9 82 81.7
Carub.0001s4359 Capsella rubella HOM05D008968 ORTHO05D012182 3.4e-26 121.3 81 70.4
A08p01010 Brassica napus HOM05D008968 ORTHO05D012182 4.2e-24 114.4 80 65.0
Carub.0001s4360 Capsella rubella HOM05D008968 ORTHO05D012182 5.4e-24 114.0 85 65.9
BcaC01g01460 Brassica carinata HOM05D008968 ORTHO05D012182 9.6e-21 103.2 82 65.9
BcaC01g01464 Brassica carinata HOM05D008968 ORTHO05D012182 9.6e-21 103.2 82 65.9
C03p92250 Brassica napus HOM05D008968 ORTHO05D012182 9.6e-21 103.2 82 65.9
C03p92230 Brassica napus HOM05D008968 ORTHO05D012182 3.1e-19 98.2 65 69.2
BraA08t32153Z Brassica rapa HOM05D008968 ORTHO05D012182 4.5e-18 94.4 65 64.6
AT1G35435 Arabidopsis thaliana HOM05D008968 ORTHO05D017410 1.3e-14 82.8 78 47.4
BolC2t07076H Brassica oleracea HOM05D008968 ORTHO05D027951 5.1e-14 80.9 82 46.3
A06p00450 Brassica napus HOM05D008968 ORTHO05D017410 6.7e-14 80.5 79 45.6
BraA06t23259Z Brassica rapa HOM05D008968 ORTHO05D017410 6.7e-14 80.5 79 45.6
AL1G50280 Arabidopsis lyrata HOM05D008968 ORTHO05D017410 1.9e-13 79.0 78 46.2
BcaC08g43601 Brassica carinata HOM05D008968 ORTHO05D017410 1.9e-13 79.0 81 43.2
BNapus_Darmor_BZH_scaffold_38p01330 Brassica napus HOM05D008968 ORTHO05D027951 2.5e-13 78.6 83 45.8
C02p10450 Brassica napus HOM05D008968 ORTHO05D027951 4.3e-13 77.8 83 44.6
BraA02t05597Z Brassica rapa HOM05D008968 ORTHO05D027951 4.3e-13 77.8 83 44.6
Carub.0003s2644 Capsella rubella HOM05D008968 ORTHO05D012182 4.3e-13 77.8 80 46.2
C06p09990 Brassica napus HOM05D008968 ORTHO05D017410 7.4e-13 77.0 81 42.0
BolC6t36072H Brassica oleracea HOM05D008968 ORTHO05D017410 7.4e-13 77.0 81 42.0
Carub.0001s3304 Capsella rubella HOM05D008968 ORTHO05D017410 1.8e-11 72.4 82 42.7
CARHR034210 Cardamine hirsuta HOM05D008968 ORTHO05D017410 2.9e-09 65.1 79 39.2
Carub.0003s2791 Capsella rubella HOM05D008968 ORTHO05D012182 3.8e-09 64.7 80 42.5
BolC3t21538H Brassica oleracea HOM05D008968 ORTHO05D106016 2.5e-08 62.0 45 68.9
Carub.0003s2874 Capsella rubella HOM05D008968 ORTHO05D012182 2.5e-08 62.0 47 51.1
A07p06560 Brassica napus HOM05D008803 ORTHO05D011315 5.5e-08 60.8 78 39.7
A07p06570 Brassica napus HOM05D008803 ORTHO05D011315 5.5e-08 60.8 78 39.7
BcaC06g35895 Brassica carinata HOM05D008803 ORTHO05D011315 9.3e-08 60.1 78 39.7
BolC7t41442H Brassica oleracea HOM05D008803 ORTHO05D011315 9.3e-08 60.1 78 39.7
BcaB06g26822 Brassica carinata HOM05D008803 ORTHO05D011315 1.2e-07 59.7 78 41.0
BraA07t28450Z Brassica rapa HOM05D008803 ORTHO05D011315 1.6e-07 59.3 78 38.5
Thhalv10003010m.g Eutrema salsugineum HOM05D008803 ORTHO05D011315 2.7e-07 58.5 78 39.7
C07p09960 Brassica napus HOM05D008803 ORTHO05D011315 6.1e-07 57.4 78 39.7
C07p09970 Brassica napus HOM05D008803 ORTHO05D011315 1.0e-06 56.6 78 38.5
Thhalv10002768m.g Eutrema salsugineum HOM05D008803 ORTHO05D011315 1.0e-06 56.6 78 38.5
Thhalv10003076m.g Eutrema salsugineum HOM05D008803 ORTHO05D011315 1.0e-06 56.6 78 37.2
BcaB06g25858 Brassica carinata HOM05D008803 ORTHO05D011315 1.3e-06 56.2 78 37.2
BcaB06g25857 Brassica carinata HOM05D008803 ORTHO05D011315 1.8e-06 55.8 78 37.2
AL8G26140 Arabidopsis lyrata HOM05D008803 ORTHO05D011315 3.9e-06 54.7 80 42.5
AT5G51845 Arabidopsis thaliana HOM05D008803 ORTHO05D011315 5.1e-06 54.3 79 40.5
CARHR274220 Cardamine hirsuta HOM05D008803 ORTHO05D011315 8.7e-06 53.5 78 39.7


User provided reference genes

Program Settings