Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g32813 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-287 992.6 520 100.0
BcaB03g13795 Brassica carinata HOM05D003649 ORTHO05D004498 3.0e-184 649.0 404 82.4
A09p34660 Brassica napus HOM05D003649 ORTHO05D004498 7.3e-183 644.4 380 89.5
BraA07t28735Z Brassica rapa HOM05D003649 ORTHO05D004498 8.1e-182 641.0 406 83.3
A07p09400 Brassica napus HOM05D003649 ORTHO05D004498 2.4e-181 639.4 407 83.3
BraA09t39000Z Brassica rapa HOM05D003649 ORTHO05D004498 3.4e-180 635.6 380 88.7
C07p14470 Brassica napus HOM05D003649 ORTHO05D004498 2.7e-177 625.9 405 81.2
Thhalv10007604m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 4.6e-177 625.2 401 81.3
BolC7t41946H Brassica oleracea HOM05D003649 ORTHO05D004498 1.5e-175 620.2 405 80.5
Sp1g27340 Schrenkiella parvula HOM05D003649 ORTHO05D004498 3.3e-175 619.0 400 81.5
BcaC05g27183 Brassica carinata HOM05D003649 ORTHO05D004498 1.4e-170 603.6 402 81.8
AT1G31660 Arabidopsis thaliana HOM05D003649 ORTHO05D004498 5.7e-167 591.7 397 77.6
CARHR286950 Cardamine hirsuta HOM05D003649 ORTHO05D004498 1.2e-164 583.9 396 75.5
Carub.0001s2998 Capsella rubella HOM05D003649 ORTHO05D004498 2.1e-161 573.2 398 73.9
Aa31LG2G14410 Aethionema arabicum HOM05D003649 ORTHO05D004498 6.5e-155 551.6 397 73.0
BolC5t31810H Brassica oleracea HOM05D003649 ORTHO05D004498 1.7e-142 510.4 319 86.2
Atru.chr3.3291 Acer truncatum HOM05D003649 ORTHO05D004498 1.9e-130 470.3 400 62.5
TWI38G0227 Tripterygium wilfordii HOM05D003649 ORTHO05D004498 2.1e-129 466.8 404 59.9
Duzib168G1903 Durio zibethinus HOM05D003649 ORTHO05D004498 3.6e-129 466.1 392 60.7
Manes.14G150400 Manihot esculenta HOM05D003649 ORTHO05D004498 3.6e-129 466.1 407 61.9
Rhsim09G0104200 Rhododendron simsii HOM05D003649 ORTHO05D004498 4.7e-129 465.7 387 60.7
QL02p065039 Quercus lobata HOM05D003649 ORTHO05D004498 2.3e-128 463.4 390 61.5
GSVIVG01038352001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.2e-127 461.1 397 58.7
vmacro10596 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 2.0e-127 460.3 387 60.5
Gohir.A07G112700 Gossypium hirsutum HOM05D003649 ORTHO05D004498 2.6e-127 459.9 393 59.5
Manes.14G152600 Manihot esculenta HOM05D003649 ORTHO05D004498 2.6e-127 459.9 391 62.4
Oeu058434.1 Olea europaea HOM05D003649 ORTHO05D004498 2.6e-127 459.9 421 56.3
Gorai.001G124600 Gossypium raimondii HOM05D003649 ORTHO05D004498 4.4e-127 459.1 393 59.8
SalBow5G3252 Salvia bowleyana HOM05D003649 ORTHO05D004498 5.7e-127 458.8 418 56.9
Prupe.4G148600 Prunus persica HOM05D003649 ORTHO05D004498 7.5e-127 458.4 390 58.5
CSS0028028 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 9.8e-127 458.0 379 60.7
Gohir.D07G116200 Gossypium hirsutum HOM05D003649 ORTHO05D004498 9.8e-127 458.0 393 59.8
CSS0018218 Camellia sinensis var. sinensis HOM05D003649 ORTHO05D004498 1.7e-126 457.2 379 60.7
Actinidia14919 Actinidia chinensis HOM05D003649 ORTHO05D004498 6.3e-126 455.3 381 59.3
SalBow6G0551 Salvia bowleyana HOM05D003649 ORTHO05D004498 8.3e-126 454.9 419 58.9
MSTRG.6707 Avicennia marina HOM05D003649 ORTHO05D004498 1.1e-125 454.5 422 56.4
Aqoxy1G02521 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.8e-125 453.8 385 60.0
SGA_v2.0_scaffold73G24356 Striga asiatica HOM05D003649 ORTHO05D004498 1.8e-125 453.8 391 60.6
GSVIVG01011050001 Vitis vinifera HOM05D003649 ORTHO05D004498 1.8e-125 453.8 392 58.7
Eucgr.F01411 Eucalyptus grandis HOM05D003649 ORTHO05D004498 2.4e-125 453.4 381 65.9
Potri.001G394000 Populus trichocarpa HOM05D003649 ORTHO05D004498 2.4e-125 453.4 393 59.5
SalBow8G0566 Salvia bowleyana HOM05D003649 ORTHO05D004498 2.4e-125 453.4 419 58.7
Potri.011G112500 Populus trichocarpa HOM05D003649 ORTHO05D004498 4.1e-125 452.6 393 59.3
Sc26g0001160 Simmondsia chinensis HOM05D003649 ORTHO05D004498 5.4e-125 452.2 387 59.2
Cc05_g10190 Coffea canephora HOM05D003649 ORTHO05D004498 9.1e-125 451.4 319 67.4
MD10G1195400 Malus domestica HOM05D003649 ORTHO05D004498 1.2e-124 451.1 391 59.3
PGR142G4312 Punica granatum HOM05D003649 ORTHO05D004498 1.6e-124 450.7 392 58.7
TAR627G1042 Trochodendron aralioides HOM05D003649 ORTHO05D004498 1.6e-124 450.7 374 63.6
CiPaw.08G013900 Carya illinoinensis HOM05D003649 ORTHO05D004498 2.7e-124 449.9 383 61.4
Hma1.2p1_0505F.1_g168130 Hydrangea macrophylla HOM05D003649 ORTHO05D004498 4.5e-124 449.1 390 60.3
Thecc.09G274600 Theobroma cacao HOM05D003649 ORTHO05D004498 5.9e-124 448.7 381 60.4
Ca_25060_v3 Cicer arietinum L. HOM05D003649 ORTHO05D004498 7.7e-124 448.4 413 56.9
DCAR_002270 Daucus carota HOM05D003649 ORTHO05D004498 3.8e-123 446.0 383 60.1
Peaxi162Scf00111g00723 Petunia axillaris HOM05D003649 ORTHO05D004498 1.1e-122 444.5 393 58.0
THA.LOC104814384 Tarenaya hassleriana HOM05D003649 ORTHO05D004498 1.9e-122 443.7 394 59.1
Nitab4.5_0001924g0070 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.2e-122 443.0 372 60.8
EL10Ac3g06484 Beta vulgaris HOM05D003649 ORTHO05D004498 7.2e-122 441.8 386 57.3
Cfa011266 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.2e-121 441.0 394 58.6
Ciclev10023274m.g Citrus clementina HOM05D003649 ORTHO05D004498 1.2e-121 441.0 306 69.3
Nn7g38381 Nelumbo nucifera HOM05D003649 ORTHO05D004498 1.6e-121 440.7 391 59.8
CANSAT01G2347 Cannabis sativa HOM05D003649 ORTHO05D004498 2.7e-121 439.9 393 58.8
Lalb_Chr21g0316901 Lupinus albus HOM05D003649 ORTHO05D004498 8.0e-121 438.3 430 55.3
PSO675G2950 Papaver somniferum HOM05D003649 ORTHO05D004498 1.4e-120 437.6 381 59.6
MBI17_g43195_MAGBIO Magnolia biondii HOM05D003649 ORTHO05D004498 3.0e-120 436.4 391 59.6
PSO541G1065 Papaver somniferum HOM05D003649 ORTHO05D004498 5.2e-120 435.6 378 60.1
ATR1132G059 Amborella trichopoda HOM05D003649 ORTHO05D004498 6.8e-120 435.3 382 58.1
Phvul.004G052800 Phaseolus vulgaris HOM05D003649 ORTHO05D004498 2.0e-119 433.7 393 57.0
Actinidia37054 Actinidia chinensis HOM05D003649 ORTHO05D004498 5.7e-119 432.2 364 59.3
HanXRQChr13g0424451 Helianthus annuus HOM05D003649 ORTHO05D004498 7.5e-119 431.8 380 56.3
Lj2g0021753 Lotus japonicus HOM05D003649 ORTHO05D004498 9.8e-119 431.4 386 57.8
Sabra11G0099700 Salix brachista HOM05D003649 ORTHO05D004498 1.3e-118 431.0 407 55.0
Hund24921 Selenicereus undatus HOM05D003649 ORTHO05D004498 1.3e-118 431.0 377 56.8
TPR.G34458 Trifolium pratense HOM05D003649 ORTHO05D004498 1.4e-117 427.6 415 55.2
Nitab4.5_0001864g0020 Nicotiana tabacum HOM05D003649 ORTHO05D004498 3.1e-117 426.4 314 65.3
Ah.13g074570 Amaranthus hybridus HOM05D003649 ORTHO05D004498 5.4e-117 425.6 386 54.4
COL.COLO4_24336 Corchorus olitorius HOM05D003649 ORTHO05D004498 9.2e-117 424.9 415 54.0
MELO3C024126.2 Cucumis melo HOM05D003649 ORTHO05D004498 9.2e-117 424.9 379 57.3
Lsat_1_v5_gn_5_148460 Lactuca sativa HOM05D003649 ORTHO05D004498 2.7e-116 423.3 385 56.6
Migut.M00658 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.5e-116 422.5 423 53.2
CDE06G0350 Ceratophyllum demersum HOM05D003649 ORTHO05D004498 1.0e-115 421.4 376 59.8
Glyma.03G190900 Glycine max HOM05D003649 ORTHO05D004498 1.0e-115 421.4 311 64.6
Sed0023018 Sechium edule HOM05D003649 ORTHO05D004498 1.7e-115 420.6 376 58.2
CsaV3_7G025330 Cucumis sativus L. HOM05D003649 ORTHO05D004498 2.9e-115 419.9 379 56.2
FAN21G3990 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.9e-115 419.9 414 55.3
FAN16G3269 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.5e-114 416.8 410 54.6
RcHm_v2.0_Chr5g0027651 Rosa chinensis HOM05D003649 ORTHO05D004498 2.5e-114 416.8 417 52.8
Glyma.05G087100 Glycine max HOM05D003649 ORTHO05D004498 3.3e-114 416.4 378 56.9
FAN25G2823 Fragaria x ananassa HOM05D003649 ORTHO05D004498 4.3e-114 416.0 405 53.3
FvH4_3g16580 Fragaria vesca HOM05D003649 ORTHO05D004498 7.3e-114 415.2 403 56.1
EL10Ac3g06580 Beta vulgaris HOM05D003649 ORTHO05D004498 1.8e-112 410.6 395 53.7
AUR62036018 Chenopodium quinoa HOM05D003649 ORTHO05D004498 1.8e-112 410.6 377 54.6
Medtr5g025980 Medicago truncatula HOM05D003649 ORTHO05D004498 3.0e-112 409.8 410 54.1
Sopen07g029910 Solanum pennellii HOM05D003649 ORTHO05D004498 6.8e-112 408.7 317 63.4
ECA236G2713 Erigeron canadensis HOM05D003649 ORTHO05D004498 8.9e-112 408.3 386 53.4
PGSC0003DMG400027653 Solanum tuberosum HOM05D003649 ORTHO05D004498 8.9e-112 408.3 363 57.9
unitig_748.g7599 Utricularia gibba HOM05D003649 ORTHO05D004498 8.9e-112 408.3 430 52.6
ClCG09G009520 Citrullus lanatus HOM05D003649 ORTHO05D004498 1.2e-111 407.9 390 55.6
Psat2g144640 Pisum sativum HOM05D003649 ORTHO05D004498 9.8e-111 404.8 376 55.9
Cpa.g.sc54.5 Carica papaya HOM05D003649 ORTHO05D004498 2.9e-110 403.3 391 55.2
FAN21G1332 Fragaria x ananassa HOM05D003649 ORTHO05D004498 2.9e-110 403.3 398 55.0
MD05G1209000 Malus domestica HOM05D003649 ORTHO05D004498 1.4e-109 401.0 343 58.9
FAN11G3158 Fragaria x ananassa HOM05D003649 ORTHO05D004498 1.8e-109 400.6 395 53.4
arahy.Tifrunner.gnm1.ann1.2990BW Arachis hypogaea HOM05D003649 ORTHO05D004498 4.1e-109 399.4 381 51.7
Lj1C808T9 Lonicera japonica HOM05D003649 ORTHO05D004498 1.6e-108 397.5 385 55.3
PSO339G4670 Papaver somniferum HOM05D003649 ORTHO05D004498 7.8e-108 395.2 383 53.8
Aqoxy5G01320 Aquilegia oxysepala HOM05D003649 ORTHO05D004498 1.0e-107 394.8 287 66.2
PSO339G1025 Papaver somniferum HOM05D003649 ORTHO05D004498 1.3e-107 394.4 383 53.8
arahy.Tifrunner.gnm1.ann1.FP5V95 Arachis hypogaea HOM05D003649 ORTHO05D004498 1.7e-107 394.0 413 48.7
Pp3c10_5710 Physcomitrium patens HOM05D003649 ORTHO05D004498 8.6e-107 391.7 382 54.5
arahy.Tifrunner.gnm1.ann1.V43L5Z Arachis hypogaea HOM05D003649 ORTHO05D004498 7.3e-106 388.7 374 53.2
Pp3c14_4070 Physcomitrium patens HOM05D003649 ORTHO05D004498 8.0e-105 385.2 379 54.1
Os09g0352400 Oryza sativa ssp. japonica HOM05D003649 ORTHO05D004498 3.1e-104 383.3 383 55.6
Rhsim09G0104400 Rhododendron simsii HOM05D003649 ORTHO05D004498 5.2e-104 382.5 379 54.4
CBR_g984 Chara braunii HOM05D003649 ORTHO05D004498 4.4e-103 379.4 380 52.1
Mapoly0048s0058 Marchantia polymorpha HOM05D003649 ORTHO05D004498 4.4e-103 379.4 308 59.1
Solyc07g056550.3 Solanum lycopersicum HOM05D003649 ORTHO05D004498 1.3e-102 377.9 290 64.1
SMO358G0130 Selaginella moellendorffii HOM05D003649 ORTHO05D004498 4.9e-102 375.9 307 58.6
Haze_02513 Corylus avellana HOM05D003649 ORTHO05D004498 1.1e-101 374.8 438 49.5
AUR62035508 Chenopodium quinoa HOM05D003649 ORTHO05D004498 7.0e-101 372.1 397 50.1
arahy.Tifrunner.gnm1.ann1.956DWW Arachis hypogaea HOM05D003649 ORTHO05D004498 2.7e-100 370.2 361 52.1
Migut.M00659 Erythranthe guttata HOM05D003649 ORTHO05D004498 3.0e-99 366.7 419 49.9
VMungo1127G0750 Vigna mungo HOM05D003649 ORTHO05D004498 3.0e-99 366.7 345 55.1
Thecc.09G275100 Theobroma cacao HOM05D003649 ORTHO05D004498 1.1e-96 358.2 323 56.7
Haze_18856 Corylus avellana HOM05D003649 ORTHO05D004498 8.9e-96 355.1 462 46.1
HPP92_001514 Vanilla planifolia HOM05D003649 ORTHO05D004498 3.4e-95 353.2 357 51.0
AagrBONN_evm.TU.Sc2ySwM_117.301 Anthoceros agrestis HOM05D003649 ORTHO05D004498 9.8e-95 351.7 293 57.7
Gohir.A09G098001 Gossypium hirsutum HOM05D003649 ORTHO05D004498 1.9e-90 337.4 236 67.8
MCO03G098 Micromonas commoda HOM05D003649 ORTHO05D004498 1.6e-89 334.3 319 52.7
Zm00001eb065940 Zea mays HOM05D003649 ORTHO05D004498 6.2e-89 332.4 401 47.4
Ah.13g066610 Amaranthus hybridus HOM05D003649 ORTHO05D004498 1.8e-88 330.9 317 53.3
CANSAT80G0167 Cannabis sativa HOM05D003649 ORTHO05D004498 2.0e-87 327.4 248 65.3
COL.COLO4_22663 Corchorus olitorius HOM05D003649 ORTHO05D004498 2.2e-86 323.9 391 47.3
Migut.J00669 Erythranthe guttata HOM05D003649 ORTHO05D004498 4.9e-86 322.8 414 44.7
A07p08470 Brassica napus HOM05D003649 ORTHO05D004498 5.4e-85 319.3 373 48.5
Cre01.g063267 Chlamydomonas reinhardtii HOM05D003649 ORTHO05D004498 7.1e-85 318.9 315 51.1
TPR.G9666 Trifolium pratense HOM05D003649 ORTHO05D004498 1.7e-83 314.3 267 59.9
vmacro10597 Vaccinium macrocarpon HOM05D003649 ORTHO05D004498 3.9e-83 313.2 428 43.0
A07p11220 Brassica napus HOM05D003649 ORTHO05D004498 6.6e-83 312.4 376 48.1
PRCOL_00003636 Prasinoderma coloniale HOM05D003649 ORTHO05D004498 6.6e-83 312.4 312 50.0
BcaC06g35364 Brassica carinata HOM05D003649 ORTHO05D004498 2.5e-82 310.5 376 47.6
Thhalv10028678m.g Eutrema salsugineum HOM05D003649 ORTHO05D004498 2.5e-82 310.5 405 44.2
BraA07t28915Z Brassica rapa HOM05D003649 ORTHO05D004498 2.6e-79 300.4 311 51.1
C07p13190 Brassica napus HOM05D003649 ORTHO05D004498 1.3e-78 298.1 367 45.5
BolC7t41812H Brassica oleracea HOM05D003649 ORTHO05D004498 1.7e-78 297.7 367 45.5
C07p16930 Brassica napus HOM05D003649 ORTHO05D004498 2.3e-75 287.3 401 43.9
BolC7t42199H Brassica oleracea HOM05D003649 ORTHO05D004498 4.3e-74 283.1 353 46.5
BcaC06g35591 Brassica carinata HOM05D003649 ORTHO05D004498 1.1e-72 278.5 354 44.4
CANSAT54G0397 Cannabis sativa HOM05D003649 ORTHO05D004498 9.6e-66 255.4 188 66.0
RcHm_v2.0_Chr6g0291881 Rosa chinensis HOM05D003649 ORTHO05D004498 3.4e-63 246.9 346 42.5
Cfa011268 Carpinus fangiana HOM05D007039 ORTHO05D008886 6.2e-57 226.1 244 51.2
Atru.chr3.2262 Acer truncatum HOM05D003649 ORTHO05D004498 1.3e-51 208.4 141 74.5
Atru.chr3.2268 Acer truncatum HOM05D003649 ORTHO05D004498 1.3e-51 208.4 141 74.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 2.3e-51 207.6 322 38.5
Pp3c1_22730 Physcomitrium patens HOM05D003649 ORTHO05D004498 2.6e-47 194.1 153 63.4
C07p16950 Brassica napus HOM05D003649 ORTHO05D027520 6.5e-46 189.5 176 63.1
arahy.Tifrunner.gnm1.ann1.KE86EX Arachis hypogaea HOM05D003649 ORTHO05D004498 3.7e-41 173.7 200 47.5
SEGI_32462 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 3.7e-41 173.7 144 61.1
Sabra16G0258400 Salix brachista HOM05D003649 ORTHO05D004498 1.5e-39 168.3 144 59.7
BolC7t42200H Brassica oleracea HOM05D003649 ORTHO05D027520 2.3e-35 154.5 201 50.7
C07p16940 Brassica napus HOM05D003649 ORTHO05D027520 2.8e-33 147.5 157 58.0
SEGI_37931 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 2.0e-31 141.4 94 70.2
arahy.Tifrunner.gnm1.ann1.S7QI7K Arachis hypogaea HOM05D003649 ORTHO05D004498 5.5e-29 133.3 165 46.1
Actinidia13653 Actinidia chinensis HOM05D003649 ORTHO05D004498 4.4e-26 123.6 131 51.9
AL6G50590 Arabidopsis lyrata HOM05D003649 ORTHO05D004498 4.8e-25 120.2 113 54.0
BolC9t56391H Brassica oleracea HOM05D003649 ORTHO05D004498 3.1e-24 117.5 94 58.5
RhsimUnG0127900 Rhododendron simsii HOM05D003649 ORTHO05D004498 3.5e-23 114.0 84 65.5
arahy.Tifrunner.gnm1.ann1.CT835L Arachis hypogaea HOM05D003649 ORTHO05D004498 1.3e-22 112.1 119 49.6
C07p16910 Brassica napus HOM05D003649 ORTHO05D041406 1.3e-22 112.1 122 59.0
BolC7t42196H Brassica oleracea HOM05D003649 ORTHO05D041406 1.3e-22 112.1 122 59.0
A09p28020 Brassica napus HOM05D003649 ORTHO05D004498 1.7e-22 111.7 89 62.9
C09p35520 Brassica napus HOM05D003649 ORTHO05D004498 1.1e-21 109.0 89 58.4
BraA07t28632Z Brassica rapa HOM05D003649 ORTHO05D004498 1.6e-20 105.1 96 55.2
BolC7t42195H Brassica oleracea HOM05D003649 ORTHO05D040526 4.0e-19 100.5 115 52.2
BcaC05g27926 Brassica carinata HOM05D003649 ORTHO05D004498 2.2e-17 94.7 170 35.3
DCAR_030782 Daucus carota HOM05D003649 ORTHO05D004498 2.8e-17 94.4 67 68.7
BcaC06g35362 Brassica carinata HOM05D003649 ORTHO05D027520 1.2e-15 89.0 119 51.3
SGA_v2.0_scaffold30G12442 Striga asiatica HOM05D003649 ORTHO05D004498 2.5e-13 81.3 96 51.0
C07p16900 Brassica napus HOM05D003649 ORTHO05D040526 1.5e-10 72.0 81 53.1
BcaC04g21367 Brassica carinata HOM05D001554 ORTHO05D001481 2.8e-09 67.8 54 55.6
C09p32650 Brassica napus HOM05D003649 ORTHO05D004498 2.8e-09 67.8 54 55.6
SGA_v2.0_scaffold24G10283 Striga asiatica HOM05D003649 ORTHO05D031702 8.3e-09 66.2 49 61.2
MBI19_g34544_MAGBIO Magnolia biondii HOM05D000961 ORTHO05D000841 2.4e-08 64.7 39 79.5
DCAR_030783 Daucus carota HOM05D003649 ORTHO05D004498 3.1e-08 64.3 121 37.2
SEGI_11889 Sequoiadendron giganteum HOM05D003649 ORTHO05D004498 9.1e-08 62.8 176 30.7
Thecc.09G274800 Theobroma cacao HOM05D003649 ORTHO05D004498 2.0e-07 61.6 44 63.6
C09p35530 Brassica napus HOM05D003649 ORTHO05D004498 6.5e-06 56.6 197 27.4


User provided reference genes

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