Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 2.4e-95 352.1 168 100.0
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 3.0e-85 318.5 168 89.3
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 3.0e-85 318.5 168 89.3
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 3.0e-85 318.5 168 89.3
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 5.5e-79 297.7 153 91.5
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 7.6e-73 277.3 141 92.2
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 7.6e-73 277.3 165 83.0
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 4.6e-70 268.1 164 79.3
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 4.6e-70 268.1 164 79.3
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 4.3e-68 261.5 164 77.4
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 1.4e-66 256.5 155 80.0
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 5.3e-66 254.6 156 80.8
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 6.9e-66 254.2 154 79.9
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.2e-65 253.4 155 81.3
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 5.9e-65 251.1 164 76.2
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 2.3e-61 239.2 152 76.3
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 3.3e-60 235.3 159 74.2
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 3.1e-42 175.6 118 72.9
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 2.2e-40 169.5 149 58.4
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 1.3e-19 100.5 150 43.3
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 8.3e-19 97.8 117 48.7
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 1.8e-18 96.7 153 41.8
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 1.8e-18 96.7 151 41.1
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 2.4e-18 96.3 122 45.1
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 4.1e-18 95.5 131 40.5
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 5.4e-18 95.1 119 44.5
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 1.6e-17 93.6 128 39.1
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 2.0e-17 93.2 156 38.5
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 2.0e-17 93.2 156 41.7
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 2.7e-17 92.8 159 39.6
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 2.7e-17 92.8 151 42.4
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 3.5e-17 92.4 159 39.0
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 4.5e-17 92.0 164 34.1
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 5.9e-17 91.7 164 33.5
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 5.9e-17 91.7 164 33.5
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 1.0e-16 90.9 142 38.0
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 1.7e-16 90.1 150 40.0
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 1.7e-16 90.1 147 35.4
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 1.7e-16 90.1 145 39.3
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 2.9e-16 89.4 151 41.1
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 3.8e-16 89.0 144 42.4
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 3.8e-16 89.0 150 39.3
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 1.5e-15 87.0 161 38.5
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.9e-15 86.7 155 37.4
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 3.3e-15 85.9 155 40.0
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 3.3e-15 85.9 157 37.6
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 3.3e-15 85.9 121 41.3
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 4.3e-15 85.5 154 34.4
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 4.3e-15 85.5 154 34.4
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 4.3e-15 85.5 164 34.1
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 5.6e-15 85.1 125 41.6
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 7.3e-15 84.7 154 40.3
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 9.5e-15 84.3 132 39.4
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 9.5e-15 84.3 132 39.4
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 1.2e-14 84.0 121 43.0
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.1e-14 83.2 157 38.9
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.1e-14 83.2 144 41.0
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 2.1e-14 83.2 135 40.0
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 2.1e-14 83.2 109 41.3
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 2.8e-14 82.8 137 40.1
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.8e-14 82.8 143 41.3
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 4.7e-14 82.0 152 35.5
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 8.0e-14 81.3 122 39.3
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 1.0e-13 80.9 146 34.2
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.8e-13 80.1 114 38.6
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 1.8e-13 80.1 117 35.9
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 2.3e-13 79.7 123 42.3
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 4.0e-13 79.0 117 41.0
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 5.2e-13 78.6 119 41.2
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 6.8e-13 78.2 158 36.7
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 6.8e-13 78.2 138 34.8
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 6.8e-13 78.2 120 40.0
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 8.9e-13 77.8 115 40.0
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 8.9e-13 77.8 118 39.8
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 8.9e-13 77.8 118 39.8
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 1.5e-12 77.0 111 40.5
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 2.0e-12 76.6 121 39.7
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 2.6e-12 76.3 148 33.8
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 3.4e-12 75.9 141 31.2
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 3.4e-12 75.9 114 39.5
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 3.4e-12 75.9 114 39.5
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 5.7e-12 75.1 117 37.6
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 5.7e-12 75.1 153 35.3
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 1.3e-11 73.9 146 34.9
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 2.9e-11 72.8 111 38.7
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 3.7e-11 72.4 111 37.8
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 3.7e-11 72.4 126 35.7
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 3.7e-11 72.4 134 37.3
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 4.9e-11 72.0 111 37.8
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 4.9e-11 72.0 114 39.5
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 6.4e-11 71.6 116 40.5
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 8.3e-11 71.2 132 33.3
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 4.1e-10 68.9 117 39.3
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 4.1e-10 68.9 117 39.3
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 9.2e-10 67.8 145 32.4
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 1.0e-08 64.3 144 32.6
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 2.3e-08 63.2 104 37.5
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 3.0e-08 62.8 116 37.1
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 1.9e-07 60.1 122 35.2
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 3.3e-07 59.3 117 36.8
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 7.3e-07 58.2 43 60.5
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 2.8e-06 56.2 151 31.1
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 3.6e-06 55.8 133 30.8
HPP92_003114 Vanilla planifolia HOM05D007408 ORTHO05D009325 4.7e-06 55.5 113 32.7
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 6.2e-06 55.1 119 31.9


User provided reference genes

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