Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29536 Brassica carinata HOM05D005433 ORTHO05D006675 1.4e-143 513.1 281 100.0
C05p52110 Brassica napus HOM05D005433 ORTHO05D006675 3.1e-143 511.9 281 99.6
BolC5t33896H Brassica oleracea HOM05D005433 ORTHO05D006675 3.1e-143 511.9 281 99.6
A05p34330 Brassica napus HOM05D005433 ORTHO05D006675 1.9e-140 502.7 281 97.9
BraA05t22254Z Brassica rapa HOM05D005433 ORTHO05D006675 7.1e-140 500.7 281 97.5
Sp3g13310 Schrenkiella parvula HOM05D005433 ORTHO05D006675 3.7e-112 408.7 287 84.3
Thhalv10021284m.g Eutrema salsugineum HOM05D005433 ORTHO05D006675 1.0e-109 400.6 287 81.2
Carub.0003s1475 Capsella rubella HOM05D005433 ORTHO05D006675 1.2e-102 377.1 282 76.6
AT3G15110 Arabidopsis thaliana HOM05D005433 ORTHO05D006675 5.1e-98 361.7 281 73.3
AL3G27460 Arabidopsis lyrata HOM05D005433 ORTHO05D006675 8.8e-98 360.9 277 74.4
Aa31LG8G2320 Aethionema arabicum HOM05D005433 ORTHO05D006675 1.7e-88 330.1 288 70.8
THA.LOC104810456 Tarenaya hassleriana HOM05D005433 ORTHO05D006675 2.4e-79 299.7 281 64.1
Thecc.07G099400 Theobroma cacao HOM05D005433 ORTHO05D006675 1.4e-63 247.3 292 54.5
Cpa.g.sc80.11 Carica papaya HOM05D005433 ORTHO05D006675 3.1e-63 246.1 293 52.6
GSVIVG01014263001 Vitis vinifera HOM05D005433 ORTHO05D006675 5.9e-62 241.9 294 53.7
PGR083G2284 Punica granatum HOM05D005433 ORTHO05D006675 2.3e-61 240.0 265 55.8
Manes.03G104600 Manihot esculenta HOM05D005433 ORTHO05D006675 6.6e-61 238.4 243 60.5
Ciclev10009151m.g Citrus clementina HOM05D005433 ORTHO05D006675 1.1e-60 237.7 294 53.4
CiPaw.12G116900 Carya illinoinensis HOM05D005433 ORTHO05D006675 1.5e-60 237.3 285 53.3
MD03G1235600 Malus domestica HOM05D005433 ORTHO05D006675 2.5e-60 236.5 264 54.5
Cfa020622 Carpinus fangiana HOM05D005433 ORTHO05D006675 5.6e-60 235.3 271 53.1
Duzib213G0446 Durio zibethinus HOM05D005433 ORTHO05D006675 7.3e-60 235.0 277 54.9
DCAR_019573 Daucus carota HOM05D005433 ORTHO05D006675 9.5e-60 234.6 275 55.3
CSS0020446 Camellia sinensis var. sinensis HOM05D005433 ORTHO05D006675 1.6e-59 233.8 274 56.2
Hma1.2p1_0416F.1_g148475 Hydrangea macrophylla HOM05D005433 ORTHO05D006675 2.1e-59 233.4 256 56.6
Potri.011G097800 Populus trichocarpa HOM05D005433 ORTHO05D006675 2.1e-59 233.4 261 56.7
Sabra11G0091300 Salix brachista HOM05D005433 ORTHO05D006675 2.8e-59 233.0 264 55.7
ClCG05G009210 Citrullus lanatus HOM05D005433 ORTHO05D006675 3.6e-59 232.6 297 51.2
Haze_09383 Corylus avellana HOM05D005433 ORTHO05D006675 4.7e-59 232.3 261 54.0
TWI38G0185 Tripterygium wilfordii HOM05D005433 ORTHO05D006675 4.7e-59 232.3 279 53.4
QL08p023594 Quercus lobata HOM05D005433 ORTHO05D006675 6.1e-59 231.9 263 55.1
TAR624G0745 Trochodendron aralioides HOM05D005433 ORTHO05D006675 6.1e-59 231.9 282 51.1
Gohir.A01G060400 Gossypium hirsutum HOM05D005433 ORTHO05D006675 8.0e-59 231.5 282 54.6
BcaB01g02390 Brassica carinata HOM05D005433 ORTHO05D006675 1.0e-58 231.1 202 66.8
Gohir.D01G046900 Gossypium hirsutum HOM05D005433 ORTHO05D006675 1.4e-58 230.7 282 53.9
CsaV3_3G019570 Cucumis sativus L. HOM05D005433 ORTHO05D006675 2.3e-58 229.9 300 51.0
Gorai.002G066400 Gossypium raimondii HOM05D005433 ORTHO05D006675 2.3e-58 229.9 282 53.9
C09p61630 Brassica napus HOM05D005433 ORTHO05D006675 5.2e-58 228.8 176 79.0
BolC9t59001H Brassica oleracea HOM05D005433 ORTHO05D006675 5.2e-58 228.8 176 79.0
Sopen10g003020 Solanum pennellii HOM05D005433 ORTHO05D006675 5.2e-58 228.8 245 56.3
PGSC0003DMG400021311 Solanum tuberosum HOM05D005433 ORTHO05D006675 8.9e-58 228.0 235 56.2
FAN11G1719 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.2e-57 227.6 300 50.7
Nn1g06380 Nelumbo nucifera HOM05D005433 ORTHO05D006675 1.2e-57 227.6 304 49.0
FAN25G0011 Fragaria x ananassa HOM05D005433 ORTHO05D006675 1.5e-57 227.3 300 50.7
Actinidia35236 Actinidia chinensis HOM05D005433 ORTHO05D006675 2.6e-57 226.5 301 52.5
RcHm_v2.0_Chr5g0032261 Rosa chinensis HOM05D005433 ORTHO05D006675 2.6e-57 226.5 291 50.5
arahy.Tifrunner.gnm1.ann1.7LX6SY Arachis hypogaea HOM05D005433 ORTHO05D006675 4.4e-57 225.7 238 56.3
CAN.G1119.17 Capsicum annuum HOM05D005433 ORTHO05D006675 4.4e-57 225.7 279 50.9
Lalb_Chr25g0286191 Lupinus albus HOM05D005433 ORTHO05D006675 5.7e-57 225.3 225 56.9
Solyc10g007120.4 Solanum lycopersicum HOM05D005433 ORTHO05D006675 5.7e-57 225.3 259 53.3
Eucgr.F01178 Eucalyptus grandis HOM05D005433 ORTHO05D006675 7.5e-57 224.9 228 57.0
FvH4_3g19170 Fragaria vesca HOM05D005433 ORTHO05D006675 7.5e-57 224.9 300 50.7
MBI07_g32542_MAGBIO Magnolia biondii HOM05D005433 ORTHO05D006675 7.5e-57 224.9 262 53.8
Nitab4.5_0005232g0030 Nicotiana tabacum HOM05D005433 ORTHO05D006675 9.8e-57 224.6 238 56.7
SalBow8G0584 Salvia bowleyana HOM05D005433 ORTHO05D006675 9.8e-57 224.6 307 50.2
PSO675G6755 Papaver somniferum HOM05D005433 ORTHO05D006675 1.7e-56 223.8 290 51.7
arahy.Tifrunner.gnm1.ann1.H96BGA Arachis hypogaea HOM05D005433 ORTHO05D006675 2.2e-56 223.4 272 51.5
Migut.M00771 Erythranthe guttata HOM05D005433 ORTHO05D006675 3.7e-56 222.6 271 55.0
EL10Ac4g08262 Beta vulgaris HOM05D005433 ORTHO05D006675 6.4e-56 221.9 272 56.2
Nitab4.5_0001208g0170 Nicotiana tabacum HOM05D005433 ORTHO05D006675 6.4e-56 221.9 238 56.3
FAN16G0161 Fragaria x ananassa HOM05D005433 ORTHO05D006675 8.3e-56 221.5 284 52.1
Sc16g0007310 Simmondsia chinensis HOM05D005433 ORTHO05D006675 1.1e-55 221.1 260 53.5
CDE10G1174 Ceratophyllum demersum HOM05D005433 ORTHO05D006675 4.1e-55 219.2 287 47.7
Rhsim04G0023000 Rhododendron simsii HOM05D005433 ORTHO05D006675 4.1e-55 219.2 291 50.5
Peaxi162Scf00027g01311 Petunia axillaris HOM05D005433 ORTHO05D006675 5.4e-55 218.8 219 58.0
CANSAT35G1219 Cannabis sativa HOM05D005433 ORTHO05D006675 7.0e-55 218.4 259 53.3
PSO541G1927 Papaver somniferum HOM05D005433 ORTHO05D006675 1.2e-54 217.6 290 51.0
AUR62036145 Chenopodium quinoa HOM05D005433 ORTHO05D006675 2.0e-54 216.9 217 60.4
Cc05_g11610 Coffea canephora HOM05D005433 ORTHO05D006675 3.5e-54 216.1 236 54.7
FAN21G1059 Fragaria x ananassa HOM05D005433 ORTHO05D006675 4.6e-54 215.7 298 49.7
HanXRQChr10g0302491 Helianthus annuus HOM05D005433 ORTHO05D006675 6.0e-54 215.3 266 52.6
Phvul.010G112200 Phaseolus vulgaris HOM05D005433 ORTHO05D006675 7.8e-54 214.9 296 48.0
ECA234G3266 Erigeron canadensis HOM05D005433 ORTHO05D006675 2.3e-53 213.4 223 57.8
Glyma.12G227200 Glycine max HOM05D005433 ORTHO05D006675 2.3e-53 213.4 285 50.2
Lsat_1_v5_gn_5_127421 Lactuca sativa HOM05D005433 ORTHO05D006675 2.3e-53 213.4 214 60.7
SGA_v2.0_scaffold73G24224 Striga asiatica HOM05D005433 ORTHO05D006675 5.0e-53 212.2 259 51.7
Ca_03534_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.5e-52 210.7 277 51.3
Ca_30930_v3 Cicer arietinum L. HOM05D005433 ORTHO05D006675 1.5e-52 210.7 277 51.3
Lj3g0015051 Lotus japonicus HOM05D005433 ORTHO05D006675 4.3e-52 209.1 289 48.4
vmacro09517 Vaccinium macrocarpon HOM05D005433 ORTHO05D006675 4.3e-52 209.1 316 46.2
VMungo0331G0725 Vigna mungo HOM05D005433 ORTHO05D006675 4.3e-52 209.1 278 49.3
MSTRG.15245 Avicennia marina HOM05D005433 ORTHO05D006675 8.0e-51 204.9 217 59.0
Psat5g241440 Pisum sativum HOM05D005433 ORTHO05D006675 8.0e-51 204.9 265 50.6
TPR.G17538 Trifolium pratense HOM05D005433 ORTHO05D006675 1.4e-50 204.1 222 55.9
ATR0602G229 Amborella trichopoda HOM05D005433 ORTHO05D006675 1.2e-49 201.1 262 50.0
Aqoxy4G00583 Aquilegia oxysepala HOM05D005433 ORTHO05D006675 3.4e-49 199.5 269 50.2
Medtr2g078540 Medicago truncatula HOM05D005433 ORTHO05D006675 5.8e-49 198.7 255 49.8
Os02g0307800 Oryza sativa ssp. japonica HOM05D005433 ORTHO05D006675 4.1e-47 192.6 254 49.6
Gohir.D11G306500 Gossypium hirsutum HOM05D005433 ORTHO05D006675 2.7e-46 189.9 283 48.4
Gohir.A11G286600 Gossypium hirsutum HOM05D005433 ORTHO05D006675 7.8e-46 188.3 214 56.1
unitig_85.g27411 Utricularia gibba HOM05D005433 ORTHO05D006675 1.3e-45 187.6 269 45.7
unitig_86.g29837 Utricularia gibba HOM05D005433 ORTHO05D006675 1.3e-45 187.6 269 45.7
Gorai.007G325500 Gossypium raimondii HOM05D005433 ORTHO05D006675 1.7e-45 187.2 276 48.2
Zm00001eb235270 Zea mays HOM05D005433 ORTHO05D006675 3.9e-45 186.0 276 48.2
Prupe.4G173400 Prunus persica HOM05D005433 ORTHO05D006675 4.3e-44 182.6 226 51.3
Dinv14949 Davidia involucrata HOM05D005433 ORTHO05D006675 1.6e-43 180.6 227 52.9
Glyma.06G235100 Glycine max HOM05D005433 ORTHO05D006675 2.1e-43 180.3 211 53.6
Atru.chr2.2384 Acer truncatum HOM05D005433 ORTHO05D006675 4.7e-43 179.1 207 54.6
C02p31450 Brassica napus HOM05D005433 ORTHO05D006675 1.2e-41 174.5 102 95.1
Lj2g0011732 Lotus japonicus HOM05D005433 ORTHO05D006675 2.2e-40 170.2 216 49.5
MD11G1256600 Malus domestica HOM05D005433 ORTHO05D006675 1.1e-39 167.9 218 50.9
MSTRG.12890 Avicennia marina HOM05D005433 ORTHO05D006675 1.4e-39 167.5 217 50.2
Lj8A153T41 Lonicera japonica HOM05D005433 ORTHO05D006675 7.8e-38 161.8 202 54.5
Sed0015039 Sechium edule HOM05D005433 ORTHO05D006675 6.6e-37 158.7 158 58.9
Medtr6g042030 Medicago truncatula HOM05D005433 ORTHO05D006675 8.6e-37 158.3 196 51.5
Psat1g075280 Pisum sativum HOM05D005433 ORTHO05D006675 3.3e-36 156.4 183 51.4
Migut.H01964 Erythranthe guttata HOM05D005433 ORTHO05D006675 9.5e-36 154.8 214 48.6
AUR62019491 Chenopodium quinoa HOM05D005433 ORTHO05D006675 8.1e-35 151.8 262 44.7
AagrBONN_evm.TU.Sc2ySwM_368.1222 Anthoceros agrestis HOM05D005433 ORTHO05D006675 2.6e-33 146.7 250 42.4
Pp3c11_19700 Physcomitrium patens HOM05D005433 ORTHO05D006675 3.4e-33 146.4 218 42.7
TPR.G19712 Trifolium pratense HOM05D005433 ORTHO05D006675 2.2e-32 143.7 221 47.1
arahy.Tifrunner.gnm1.ann1.8TDA44 Arachis hypogaea HOM05D005433 ORTHO05D006675 4.1e-31 139.4 181 47.5
Mapoly0060s0103 Marchantia polymorpha HOM05D005433 ORTHO05D006675 4.1e-31 139.4 224 44.2
HPP92_027387 Vanilla planifolia HOM05D005433 ORTHO05D006675 2.3e-29 133.7 142 56.3
arahy.Tifrunner.gnm1.ann1.2X8QJZ Arachis hypogaea HOM05D005433 ORTHO05D006675 6.6e-29 132.1 218 42.7
Thecc.07G099700 Theobroma cacao HOM05D005433 ORTHO05D006675 2.1e-27 127.1 142 53.5
C01p49410 Brassica napus HOM05D005433 ORTHO05D040690 3.8e-24 116.3 139 59.7
Lsat_1_v5_gn_7_42380 Lactuca sativa HOM05D005433 ORTHO05D006675 8.4e-24 115.2 139 54.7
SGA_v2.0_scaffold70G23696 Striga asiatica HOM05D005433 ORTHO05D006675 8.4e-24 115.2 155 49.0
CARHR090080 Cardamine hirsuta HOM05D005433 ORTHO05D006675 1.0e-21 108.2 78 78.2
CBR_g28819 Chara braunii HOM05D005433 ORTHO05D006675 1.3e-21 107.8 250 34.8
SMO143G0248 Selaginella moellendorffii HOM05D009232 ORTHO05D006675 1.7e-21 107.5 207 39.6
Glyma.13G273100 Glycine max HOM05D005433 ORTHO05D006675 2.3e-21 107.1 150 47.3
Lalb_Chr03g0030801 Lupinus albus HOM05D005433 ORTHO05D006675 1.6e-19 100.9 141 49.6
Lsat_1_v5_gn_0_4360 Lactuca sativa HOM05D005433 ORTHO05D006675 2.4e-18 97.1 181 44.2
CARHR090070 Cardamine hirsuta HOM05D005433 ORTHO05D006675 2.0e-17 94.0 69 81.2
Oeu051094.1 Olea europaea HOM05D005433 ORTHO05D006675 7.6e-17 92.0 223 35.9
Oeu051093.1 Olea europaea HOM05D005433 ORTHO05D006675 2.4e-15 87.0 139 44.6
EL10Ac5g11588 Beta vulgaris HOM05D005433 ORTHO05D006675 1.2e-14 84.7 75 65.3
Cre03.g167400 Chlamydomonas reinhardtii HOM05D005433 ORTHO05D006675 1.8e-13 80.9 155 40.6
Oeu055126.1 Olea europaea HOM05D005433 ORTHO05D006675 2.4e-10 70.5 127 42.5
MCO01G315 Micromonas commoda HOM05D005433 ORTHO05D006675 1.3e-08 64.7 188 27.7
Lsat_1_v5_gn_4_180780 Lactuca sativa HOM05D005433 ORTHO05D006675 4.2e-07 59.7 64 56.2
Actinidia09909 Actinidia chinensis HOM05D005433 ORTHO05D006675 5.5e-07 59.3 67 50.7
EL10Ac1g01129 Beta vulgaris HOM05D005433 ORTHO05D006675 1.2e-06 58.2 35 82.9


User provided reference genes

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