Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 2.0e-126 455.7 216 100.0
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 2.5e-124 448.7 216 98.1
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.6e-123 446.0 216 97.2
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.6e-123 446.0 216 97.2
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 2.7e-123 445.3 216 97.2
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 6.1e-123 444.1 216 97.2
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 1.0e-122 443.4 216 97.2
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 1.5e-121 439.5 216 96.3
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 2.4e-119 432.2 216 94.0
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 3.4e-118 428.3 211 95.7
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 2.2e-117 425.6 216 91.7
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 2.9e-117 425.2 214 93.9
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 1.2e-115 419.9 203 97.0
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 3.9e-114 414.8 217 92.2
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 6.7e-106 387.5 216 85.2
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 8.8e-106 387.1 216 83.8
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 1.1e-105 386.7 216 83.3
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 1.5e-105 386.3 216 83.3
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 5.7e-105 384.4 216 83.3
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 7.4e-105 384.0 217 84.3
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 2.8e-104 382.1 216 82.9
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 6.3e-104 380.9 216 82.4
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 8.2e-104 380.6 216 82.9
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 1.1e-103 380.2 216 82.4
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.1e-103 380.2 215 82.3
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.1e-103 380.2 215 82.3
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.8e-103 379.4 216 83.8
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 2.4e-103 379.0 216 81.0
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 3.1e-103 378.6 220 81.8
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 4.1e-103 378.3 216 82.4
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 7.0e-103 377.5 214 81.3
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 9.1e-103 377.1 216 81.9
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 9.1e-103 377.1 218 82.1
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.2e-102 376.7 220 81.8
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 1.6e-102 376.3 218 82.1
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.6e-102 376.3 217 82.0
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 3.5e-102 375.2 217 82.5
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 3.5e-102 375.2 216 80.6
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.9
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.0
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.5
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 7.7e-102 374.0 216 81.0
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 1.0e-101 373.6 217 82.0
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.0e-101 373.6 217 82.0
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.0e-101 373.6 217 80.6
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.7e-101 372.9 216 81.0
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 1.7e-101 372.9 216 80.1
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 2.2e-101 372.5 238 75.2
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 2.9e-101 372.1 216 81.5
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 2.9e-101 372.1 216 79.6
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 3.8e-101 371.7 216 80.6
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 5.0e-101 371.3 219 79.5
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 5.0e-101 371.3 216 81.0
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 8.5e-101 370.5 216 79.2
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 1.1e-100 370.2 232 76.7
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 3.2e-100 368.6 218 80.3
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 3.2e-100 368.6 216 80.6
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 5.5e-100 367.9 218 80.3
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 5.5e-100 367.9 211 81.5
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 7.2e-100 367.5 217 80.6
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 1.2e-99 366.7 216 78.2
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 1.6e-99 366.3 217 80.2
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 1.6e-99 366.3 216 78.7
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 1.6e-99 366.3 216 78.7
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 6.1e-99 364.4 218 79.8
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 1.0e-98 363.6 249 71.5
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 1.8e-98 362.8 216 79.2
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 1.8e-98 362.8 217 79.7
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 1.8e-98 362.8 217 79.7
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 2.3e-98 362.5 216 79.2
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 3.0e-98 362.1 217 79.7
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 5.2e-98 361.3 217 79.3
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 6.7e-98 360.9 217 79.7
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 6.7e-98 360.9 218 78.9
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 1.5e-97 359.8 216 80.1
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 7.5e-97 357.5 217 78.3
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 7.5e-97 357.5 226 76.1
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 1.3e-96 356.7 216 77.8
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 1.7e-96 356.3 217 77.9
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 3.7e-96 355.1 219 76.7
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 1.8e-95 352.8 201 81.6
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 2.4e-95 352.4 186 86.0
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 9.1e-95 350.5 202 78.2
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 4.5e-94 348.2 219 74.9
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 7.7e-94 347.4 201 80.6
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 6.5e-93 344.4 221 75.6
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 3.2e-92 342.0 182 85.2
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 5.5e-92 341.3 242 70.2
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 3.6e-91 338.6 189 83.6
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 8.0e-91 337.4 180 85.6
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 1.0e-90 337.0 178 86.0
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.4e-90 336.7 197 80.2
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 2.3e-90 335.9 189 82.5
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 3.4e-89 332.0 199 78.9
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 4.4e-89 331.6 191 79.6
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 3.7e-88 328.6 191 80.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 2.0e-86 322.8 191 79.6
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 1.0e-85 320.5 190 80.5
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 5.0e-85 318.2 208 71.6
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 4.2e-84 315.1 198 70.2
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 3.6e-83 312.0 192 75.0
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 8.0e-83 310.8 198 69.7
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.5e-81 306.6 217 64.1
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 1.2e-78 297.0 188 68.6
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 8.9e-74 280.8 145 86.2
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 1.2e-73 280.4 145 87.6
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.7e-73 278.1 171 77.8
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 5.7e-73 278.1 171 77.8
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 2.7e-70 269.2 191 62.8
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 5.6e-68 261.5 133 88.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 6.8e-66 254.6 133 85.7
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 1.9e-63 246.5 133 82.7
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 2.3e-61 239.6 130 81.5
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 1.5e-57 226.9 122 81.1
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 2.5e-52 209.5 143 69.2
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.3e-50 203.0 125 76.0
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 3.4e-41 172.6 107 76.6
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 4.2e-39 165.6 93 81.7
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 1.3e-37 160.6 89 80.9
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 7.4e-28 128.3 87 72.4
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 2.0e-25 120.2 83 73.5
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 2.6e-25 119.8 216 32.9
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.2e-22 110.9 190 35.3
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 7.9e-14 81.6 41 87.8
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 7.4e-12 75.1 62 59.7
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 1.4e-10 70.9 64 56.2
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.4e-07 60.8 42 59.5


User provided reference genes

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