Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28887 Brassica carinata HOM05D000778 ORTHO05D000601 1.7e-109 399.4 216 100.0
CARHR130130 Cardamine hirsuta HOM05D000778 ORTHO05D000601 1.5e-33 147.1 258 46.5
Thhalv10016634m.g Eutrema salsugineum HOM05D000778 ORTHO05D000601 1.0e-29 134.4 247 43.7
A03p19800 Brassica napus HOM05D000778 ORTHO05D000601 5.6e-28 128.6 237 46.8
BcaB01g03873 Brassica carinata HOM05D000778 ORTHO05D000601 2.1e-27 126.7 245 45.3
BcaC02g11700 Brassica carinata HOM05D000778 ORTHO05D000601 6.2e-27 125.2 187 51.3
C04p12180 Brassica napus HOM05D000778 ORTHO05D000601 6.2e-27 125.2 187 51.3
BraA03t11232Z Brassica rapa HOM05D000778 ORTHO05D000601 2.4e-26 123.2 250 44.4
C03p23090 Brassica napus HOM05D000778 ORTHO05D000601 3.1e-26 122.9 238 45.8
BolC3t14711H Brassica oleracea HOM05D000778 ORTHO05D000601 3.1e-26 122.9 238 45.4
BcaC01g05696 Brassica carinata HOM05D000778 ORTHO05D000601 6.9e-26 121.7 238 45.0
Carub.0004s1763 Capsella rubella HOM05D000778 ORTHO05D000601 9.0e-26 121.3 244 43.4
BcaB02g09392 Brassica carinata HOM05D000778 ORTHO05D000601 5.8e-25 118.6 192 46.9
Aa31LG5G21020 Aethionema arabicum HOM05D000778 ORTHO05D000601 2.2e-24 116.7 236 41.5
Sp4g18130 Schrenkiella parvula HOM05D000778 ORTHO05D000601 5.5e-23 112.1 170 49.4
BolC4t22862H Brassica oleracea HOM05D000778 ORTHO05D000601 2.7e-22 109.8 171 49.7
AT2G35880 Arabidopsis thaliana HOM05D000778 ORTHO05D000601 1.8e-21 107.1 217 41.9
AL4G31980 Arabidopsis lyrata HOM05D000778 ORTHO05D000601 3.0e-21 106.3 288 38.5
THA.LOC104815201 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 1.6e-19 100.5 229 39.3
BraA05t19934Z Brassica rapa HOM05D000778 ORTHO05D000601 6.2e-19 98.6 273 38.1
A05p09820 Brassica napus HOM05D000778 ORTHO05D000601 1.4e-18 97.4 273 37.7
Haze_20112 Corylus avellana HOM05D000778 ORTHO05D000601 1.3e-13 80.9 103 56.3
THA.LOC104803621 Tarenaya hassleriana HOM05D000778 ORTHO05D000601 1.1e-12 77.8 220 33.6
TWI74G0228 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 5.7e-12 75.5 178 39.3
Dinv11888 Davidia involucrata HOM05D000778 ORTHO05D000601 7.4e-12 75.1 232 32.8
Zm00001eb114200 Zea mays HOM05D000778 ORTHO05D000601 1.3e-11 74.3 180 36.7
Zm00001eb333920 Zea mays HOM05D000778 ORTHO05D000601 6.3e-11 72.0 91 49.5
Ciclev10012108m.g Citrus clementina HOM05D000778 ORTHO05D000601 1.1e-10 71.2 173 37.0
CSS0044259 Camellia sinensis var. sinensis HOM05D000778 ORTHO05D000601 1.4e-10 70.9 244 34.0
Potri.016G066600 Populus trichocarpa HOM05D000778 ORTHO05D000601 1.4e-10 70.9 138 42.8
vmacro07492 Vaccinium macrocarpon HOM05D000778 ORTHO05D000601 1.4e-10 70.9 230 33.9
Cpa.g.sc222.23 Carica papaya HOM05D000778 ORTHO05D000601 5.3e-10 68.9 179 38.0
CsaV3_3G038240 Cucumis sativus L. HOM05D000778 ORTHO05D000601 6.9e-10 68.6 124 42.7
DCAR_013455 Daucus carota HOM05D000778 ORTHO05D000601 6.9e-10 68.6 215 35.8
Sabra16G0068000 Salix brachista HOM05D000778 ORTHO05D000601 6.9e-10 68.6 138 41.3
MELO3C009566.2 Cucumis melo HOM05D000778 ORTHO05D000601 9.0e-10 68.2 124 42.7
Aqoxy1G00588 Aquilegia oxysepala HOM05D000778 ORTHO05D000601 1.2e-09 67.8 223 35.0
Nn6g34603 Nelumbo nucifera HOM05D000778 ORTHO05D000601 1.2e-09 67.8 244 33.2
arahy.Tifrunner.gnm1.ann1.MF78WR Arachis hypogaea HOM05D000778 ORTHO05D000601 1.5e-09 67.4 160 36.2
arahy.Tifrunner.gnm1.ann1.HKB63Q Arachis hypogaea HOM05D000778 ORTHO05D000601 2.0e-09 67.0 160 36.2
Cc06_g06890 Coffea canephora HOM05D000778 ORTHO05D000601 2.0e-09 67.0 249 31.3
Rhsim03G0062900 Rhododendron simsii HOM05D000778 ORTHO05D000601 2.0e-09 67.0 223 34.1
Gohir.A01G199900 Gossypium hirsutum HOM05D000778 ORTHO05D000601 5.9e-09 65.5 219 36.1
Manes.08G036400 Manihot esculenta HOM05D000778 ORTHO05D000601 7.6e-09 65.1 255 31.0
MBI05_g28095_MAGBIO Magnolia biondii HOM05D000778 ORTHO05D000601 1.0e-08 64.7 169 38.5
CiPaw.09G023300 Carya illinoinensis HOM05D000778 ORTHO05D000601 1.7e-08 63.9 197 35.5
Gorai.002G233700 Gossypium raimondii HOM05D000778 ORTHO05D000601 1.7e-08 63.9 164 39.6
QL07p026771 Quercus lobata HOM05D000778 ORTHO05D000601 2.9e-08 63.2 151 37.7
TAR623G1775 Trochodendron aralioides HOM05D000778 ORTHO05D000601 2.9e-08 63.2 153 39.2
Cfa020080 Carpinus fangiana HOM05D000778 ORTHO05D000601 3.8e-08 62.8 147 40.1
RcHm_v2.0_Chr3g0477191 Rosa chinensis HOM05D000778 ORTHO05D000601 5.0e-08 62.4 249 30.9
Atru.chr8.1297 Acer truncatum HOM05D000778 ORTHO05D000601 6.5e-08 62.0 215 35.8
PSO339G2773 Papaver somniferum HOM05D000778 ORTHO05D000601 1.1e-07 61.2 218 33.9
ATR0697G012 Amborella trichopoda HOM05D000778 ORTHO05D000601 1.4e-07 60.8 182 32.4
DCAR_016912 Daucus carota HOM05D000778 ORTHO05D000601 1.4e-07 60.8 225 31.1
FvH4_6g20850 Fragaria vesca HOM05D000778 ORTHO05D000601 1.4e-07 60.8 226 33.6
FAN14G3360 Fragaria x ananassa HOM05D000778 ORTHO05D000601 1.4e-07 60.8 226 33.6
ATR1120G030 Amborella trichopoda HOM05D000778 ORTHO05D000601 3.2e-07 59.7 243 32.1
ClCG10G018060 Citrullus lanatus HOM05D000778 ORTHO05D000601 4.2e-07 59.3 118 40.7
FAN09G3334 Fragaria x ananassa HOM05D000778 ORTHO05D000601 4.2e-07 59.3 238 33.6
Manes.13G013300 Manihot esculenta HOM05D000960 ORTHO05D000683 4.2e-07 59.3 84 50.0
SGA_v2.0_scaffold392G50679 Striga asiatica HOM05D000778 ORTHO05D000601 4.2e-07 59.3 128 39.8
CiPaw.10G019900 Carya illinoinensis HOM05D000778 ORTHO05D000601 5.5e-07 58.9 154 37.7
Nitab4.5_0000220g0130 Nicotiana tabacum HOM05D000778 ORTHO05D000601 5.5e-07 58.9 228 33.3
Nitab4.5_0010873g0010 Nicotiana tabacum HOM05D000778 ORTHO05D000601 5.5e-07 58.9 229 33.6
PSO384G4839 Papaver somniferum HOM05D000778 ORTHO05D000601 5.5e-07 58.9 217 34.1
TWI53G1056 Tripterygium wilfordii HOM05D000778 ORTHO05D000601 5.5e-07 58.9 238 32.4
Nitab4.5_0000721g0190 Nicotiana tabacum HOM05D000778 ORTHO05D000601 7.2e-07 58.5 223 34.5
MSTRG.5916 Avicennia marina HOM05D000778 ORTHO05D000601 1.2e-06 57.8 225 32.9
Hma1.2p1_0969F.1_g242590 Hydrangea macrophylla HOM05D000778 ORTHO05D000601 1.2e-06 57.8 275 30.5
MD14G1043400 Malus domestica HOM05D000778 ORTHO05D000601 1.2e-06 57.8 242 30.6
Nitab4.5_0001918g0080 Nicotiana tabacum HOM05D000778 ORTHO05D000601 1.2e-06 57.8 228 34.6
Sed0001287 Sechium edule HOM05D000778 ORTHO05D000601 1.2e-06 57.8 231 30.3
Potri.006G200400 Populus trichocarpa HOM05D000778 ORTHO05D000601 1.6e-06 57.4 139 38.1
Hund14988 Selenicereus undatus HOM05D000778 ORTHO05D000601 1.6e-06 57.4 156 34.6
Solyc01g006830.3 Solanum lycopersicum HOM05D000778 ORTHO05D000601 1.6e-06 57.4 213 36.2
Sopen01g002820 Solanum pennellii HOM05D000778 ORTHO05D000601 1.6e-06 57.4 213 36.2
TAR369G0692 Trochodendron aralioides HOM05D000778 ORTHO05D000601 1.6e-06 57.4 134 40.3
COL.COLO4_29512 Corchorus olitorius HOM05D000778 ORTHO05D000601 2.1e-06 57.0 126 40.5
EL10Ac5g11820 Beta vulgaris HOM05D000778 ORTHO05D000601 2.7e-06 56.6 235 30.2
MD12G1044500 Malus domestica HOM05D000778 ORTHO05D000601 2.7e-06 56.6 243 28.4
Manes.09G042700 Manihot esculenta HOM05D000778 ORTHO05D000601 2.7e-06 56.6 199 32.7
SalBow1G6066 Salvia bowleyana HOM05D000778 ORTHO05D000601 2.7e-06 56.6 200 32.0
Actinidia07950 Actinidia chinensis HOM05D000778 ORTHO05D000601 4.6e-06 55.8 196 33.7
C04p64870 Brassica napus HOM05D000778 ORTHO05D000601 4.6e-06 55.8 111 41.4
Manes.12G017400 Manihot esculenta HOM05D000960 ORTHO05D000683 4.6e-06 55.8 69 50.7
PGSC0003DMG400021339 Solanum tuberosum HOM05D000778 ORTHO05D000601 4.6e-06 55.8 240 34.6
Duzib106G2033 Durio zibethinus HOM05D000778 ORTHO05D000601 6.1e-06 55.5 149 35.6
CDE07G0965 Ceratophyllum demersum HOM05D000778 ORTHO05D000601 7.9e-06 55.1 168 31.5
HanXRQChr13g0398691 Helianthus annuus HOM05D000778 ORTHO05D000601 7.9e-06 55.1 161 32.9
Sed0026206 Sechium edule HOM05D000778 ORTHO05D000601 7.9e-06 55.1 116 38.8
Zm00001eb200130 Zea mays HOM05D000778 ORTHO05D000601 7.9e-06 55.1 150 34.7


User provided reference genes

Program Settings