Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28849 Brassica carinata HOM05D003542 ORTHO05D018761 8.3e-33 142.9 62 100.0
BcaB06g28850 Brassica carinata HOM05D003542 ORTHO05D004799 6.6e-30 133.3 58 98.3
AL4G31650 Arabidopsis lyrata HOM05D003542 ORTHO05D004799 1.6e-28 128.6 54 100.0
AT2G35610 Arabidopsis thaliana HOM05D003542 ORTHO05D004799 1.6e-28 128.6 54 100.0
A04p27010 Brassica napus HOM05D003542 ORTHO05D004799 1.6e-28 128.6 54 100.0
BraA04t18202Z Brassica rapa HOM05D003542 ORTHO05D004799 1.6e-28 128.6 54 100.0
Thhalv10016368m.g Eutrema salsugineum HOM05D003542 ORTHO05D004799 1.6e-28 128.6 54 100.0
Sp4g17820 Schrenkiella parvula HOM05D003542 ORTHO05D004799 1.6e-28 128.6 54 100.0
BcaB02g09412 Brassica carinata HOM05D003542 ORTHO05D004799 2.8e-28 127.9 56 94.6
BcaC02g11676 Brassica carinata HOM05D003542 ORTHO05D004799 3.6e-28 127.5 54 98.1
BcaC02g11677 Brassica carinata HOM05D003542 ORTHO05D004799 3.6e-28 127.5 54 98.1
BcaC02g07760 Brassica carinata HOM05D003542 ORTHO05D004799 8.0e-28 126.3 54 98.1
C04p64420 Brassica napus HOM05D003542 ORTHO05D004799 8.0e-28 126.3 54 98.1
BolC4t27926H Brassica oleracea HOM05D003542 ORTHO05D004799 8.0e-28 126.3 54 98.1
CARHR129800 Cardamine hirsuta HOM05D003542 ORTHO05D004799 1.8e-27 125.2 54 98.1
Aa31LG9G15750 Aethionema arabicum HOM05D003542 ORTHO05D004799 3.0e-27 124.4 54 96.3
A05p10120 Brassica napus HOM05D003542 ORTHO05D004799 3.0e-27 124.4 53 96.2
C04p12510 Brassica napus HOM05D003542 ORTHO05D004799 3.0e-27 124.4 53 96.2
BolC4t22898H Brassica oleracea HOM05D003542 ORTHO05D004799 3.0e-27 124.4 53 96.2
BraA05t19953Z Brassica rapa HOM05D003542 ORTHO05D004799 3.0e-27 124.4 53 96.2
Carub.0004s1730 Capsella rubella HOM05D003542 ORTHO05D004799 4.0e-27 124.0 54 96.3
THA.LOC104798529 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 2.6e-26 121.3 54 92.6
CiPaw.11G074400 Carya illinoinensis HOM05D003542 ORTHO05D004799 1.4e-24 115.5 56 80.4
EL10Ac5g12587 Beta vulgaris HOM05D003542 ORTHO05D004799 4.1e-24 114.0 54 85.2
CiPaw.12G055200 Carya illinoinensis HOM05D003542 ORTHO05D004799 4.1e-24 114.0 56 80.4
FvH4_5g25240 Fragaria vesca HOM05D003542 ORTHO05D004799 4.1e-24 114.0 55 81.8
Gohir.A08G149000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 4.1e-24 114.0 55 83.6
Oeu036053.1 Olea europaea HOM05D003542 ORTHO05D004799 4.1e-24 114.0 53 84.9
SHI32767 Sapria himalayana HOM05D003542 ORTHO05D004799 4.1e-24 114.0 54 83.3
TAR375G0128 Trochodendron aralioides HOM05D003542 ORTHO05D004799 4.1e-24 114.0 52 88.5
CANSAT80G0877 Cannabis sativa HOM05D003542 ORTHO05D004799 5.4e-24 113.6 55 81.8
FAN08G1408 Fragaria x ananassa HOM05D003542 ORTHO05D004799 5.4e-24 113.6 55 81.8
FAN13G1207 Fragaria x ananassa HOM05D003542 ORTHO05D004799 5.4e-24 113.6 55 81.8
Gorai.004G177500 Gossypium raimondii HOM05D003542 ORTHO05D004799 5.4e-24 113.6 55 83.6
Actinidia01250 Actinidia chinensis HOM05D003542 ORTHO05D004799 7.0e-24 113.2 53 84.9
FAN18G0768 Fragaria x ananassa HOM05D003542 ORTHO05D004799 7.0e-24 113.2 54 83.3
FAN18G2203 Fragaria x ananassa HOM05D003542 ORTHO05D004799 7.0e-24 113.2 54 83.3
Gohir.D08G170000 Gossypium hirsutum HOM05D003542 ORTHO05D004799 7.0e-24 113.2 55 83.6
Sc07g0007990 Simmondsia chinensis HOM05D003542 ORTHO05D004799 7.0e-24 113.2 56 78.6
SGA_v2.0_scaffold96G29103 Striga asiatica HOM05D003542 ORTHO05D004799 7.0e-24 113.2 56 80.4
Thecc.03G319900 Theobroma cacao HOM05D003542 ORTHO05D004799 7.0e-24 113.2 55 81.8
Gohir.D12G204200 Gossypium hirsutum HOM05D003542 ORTHO05D004799 9.2e-24 112.8 55 80.0
Gorai.008G219000 Gossypium raimondii HOM05D003542 ORTHO05D004799 9.2e-24 112.8 55 80.0
Prupe.5G011600 Prunus persica HOM05D003542 ORTHO05D004799 9.2e-24 112.8 55 81.8
Duzib205G1391 Durio zibethinus HOM05D003542 ORTHO05D004799 1.2e-23 112.5 55 81.8
Lj8C8T8 Lonicera japonica HOM05D003542 ORTHO05D004799 1.2e-23 112.5 55 81.8
Ciclev10011269m.g Citrus clementina HOM05D003542 ORTHO05D004799 1.6e-23 112.1 55 81.8
Migut.A00523 Erythranthe guttata HOM05D003542 ORTHO05D004799 1.6e-23 112.1 53 86.8
RcHm_v2.0_Chr7g0215361 Rosa chinensis HOM05D003542 ORTHO05D004799 1.6e-23 112.1 55 80.0
CSS0026658 Camellia sinensis var. sinensis HOM05D003542 ORTHO05D004799 2.7e-23 111.3 55 80.0
Haze_08429 Corylus avellana HOM05D003542 ORTHO05D004799 2.7e-23 111.3 52 84.6
Hma1.2p1_0839F.1_g226340 Hydrangea macrophylla HOM05D003542 ORTHO05D004799 2.7e-23 111.3 55 81.8
Lsat_1_v5_gn_3_20301 Lactuca sativa HOM05D003542 ORTHO05D004799 2.7e-23 111.3 55 78.2
SalBow4G0461 Salvia bowleyana HOM05D003542 ORTHO05D004799 2.7e-23 111.3 53 84.9
Cpa.g.sc352.2 Carica papaya HOM05D003542 ORTHO05D018761 3.5e-23 110.9 52 86.5
DCAR_004534 Daucus carota HOM05D003542 ORTHO05D004799 3.5e-23 110.9 52 84.6
Ah.12g058430 Amaranthus hybridus HOM05D003542 ORTHO05D004799 4.6e-23 110.5 54 79.6
TWI60G1302 Tripterygium wilfordii HOM05D003542 ORTHO05D004799 4.6e-23 110.5 55 81.8
Cfa012300 Carpinus fangiana HOM05D003542 ORTHO05D004799 5.9e-23 110.2 53 81.1
ClCG11G016080 Citrullus lanatus HOM05D003542 ORTHO05D004799 5.9e-23 110.2 54 83.3
PGR042G1333 Punica granatum HOM05D003542 ORTHO05D004799 7.8e-23 109.8 56 80.4
Hund14306 Selenicereus undatus HOM05D003542 ORTHO05D004799 7.8e-23 109.8 54 81.5
AUR62030410 Chenopodium quinoa HOM05D003542 ORTHO05D004799 1.0e-22 109.4 54 79.6
COL.COLO4_16751 Corchorus olitorius HOM05D003542 ORTHO05D004799 1.0e-22 109.4 53 81.1
Manes.15G191800 Manihot esculenta HOM05D003542 ORTHO05D004799 1.0e-22 109.4 52 82.7
Manes.17G001100 Manihot esculenta HOM05D003542 ORTHO05D004799 1.0e-22 109.4 52 82.7
CsaV3_4G027890 Cucumis sativus L. HOM05D003542 ORTHO05D004799 1.3e-22 109.0 54 83.3
Rhsim11G0037300 Rhododendron simsii HOM05D003542 ORTHO05D004799 1.3e-22 109.0 59 79.7
MELO3C010524.2 Cucumis melo HOM05D003542 ORTHO05D004799 1.7e-22 108.6 54 83.3
AUR62010484 Chenopodium quinoa HOM05D003542 ORTHO05D004799 2.3e-22 108.2 54 79.6
Psat4g107640 Pisum sativum HOM05D003542 ORTHO05D004799 2.3e-22 108.2 54 81.5
TAR374G0820 Trochodendron aralioides HOM05D003542 ORTHO05D018761 2.3e-22 108.2 52 84.6
arahy.Tifrunner.gnm1.ann1.2M3042 Arachis hypogaea HOM05D003542 ORTHO05D004799 3.0e-22 107.8 53 83.0
MSTRG.25746 Avicennia marina HOM05D003542 ORTHO05D004799 3.0e-22 107.8 56 78.6
CDE04G2998 Ceratophyllum demersum HOM05D003542 ORTHO05D018761 3.0e-22 107.8 55 78.2
Sed0016507 Sechium edule HOM05D003542 ORTHO05D004799 3.9e-22 107.5 54 81.5
ECA246G1310 Erigeron canadensis HOM05D003542 ORTHO05D004799 5.0e-22 107.1 54 77.8
PSO502G0023 Papaver somniferum HOM05D003542 ORTHO05D004799 5.0e-22 107.1 55 76.4
arahy.Tifrunner.gnm1.ann1.B24I2L Arachis hypogaea HOM05D003542 ORTHO05D004799 6.6e-22 106.7 53 81.1
MD06G1008500 Malus domestica HOM05D003542 ORTHO05D004799 6.6e-22 106.7 55 76.4
Cc04_g11570 Coffea canephora HOM05D003542 ORTHO05D004799 8.6e-22 106.3 55 74.5
Cc08_g05890 Coffea canephora HOM05D003542 ORTHO05D004799 8.6e-22 106.3 55 76.4
Eucgr.E01147 Eucalyptus grandis HOM05D003542 ORTHO05D004799 1.1e-21 105.9 55 80.0
Glyma.16G109700 Glycine max HOM05D003542 ORTHO05D004799 1.1e-21 105.9 53 81.1
Lj4g0008068 Lotus japonicus HOM05D003542 ORTHO05D004799 1.1e-21 105.9 53 81.1
Glyma.16G076700 Glycine max HOM05D003542 ORTHO05D004799 1.5e-21 105.5 53 81.1
Lalb_Chr05g0215151 Lupinus albus HOM05D003542 ORTHO05D004799 1.5e-21 105.5 53 79.2
Peaxi162Scf00053g00006 Petunia axillaris HOM05D003542 ORTHO05D004799 1.5e-21 105.5 52 82.7
Psat2g145280 Pisum sativum HOM05D003542 ORTHO05D004799 1.5e-21 105.5 53 79.2
Ca_25048_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 1.9e-21 105.1 53 77.4
Medtr8g072310 Medicago truncatula HOM05D003542 ORTHO05D004799 1.9e-21 105.1 54 79.6
Cc08_g05880 Coffea canephora HOM05D003542 ORTHO05D004799 2.5e-21 104.8 53 77.4
HanXRQChr06g0173181 Helianthus annuus HOM05D003542 ORTHO05D004799 2.5e-21 104.8 51 80.4
MBI15_g33455_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D004799 2.5e-21 104.8 55 76.4
Nitab4.5_0002603g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 2.5e-21 104.8 55 78.2
PSO675G5456 Papaver somniferum HOM05D003542 ORTHO05D004799 2.5e-21 104.8 55 74.5
TPR.G8991 Trifolium pratense HOM05D003542 ORTHO05D004799 2.5e-21 104.8 53 77.4
Aqoxy5G03565 Aquilegia oxysepala HOM05D003542 ORTHO05D004799 3.3e-21 104.4 55 72.7
Sabra01G0180200 Salix brachista HOM05D003542 ORTHO05D004799 4.3e-21 104.0 53 79.2
Cc04_g11590 Coffea canephora HOM05D003542 ORTHO05D004799 5.6e-21 103.6 55 70.9
Phvul.003G278500 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 5.6e-21 103.6 53 77.4
Solyc08g075340.3 Solanum lycopersicum HOM05D003542 ORTHO05D004799 5.6e-21 103.6 55 76.4
Sopen08g023950 Solanum pennellii HOM05D003542 ORTHO05D004799 5.6e-21 103.6 55 76.4
arahy.Tifrunner.gnm1.ann1.GAUN3U Arachis hypogaea HOM05D003542 ORTHO05D004799 7.3e-21 103.2 53 77.4
arahy.Tifrunner.gnm1.ann1.JPC2KC Arachis hypogaea HOM05D003542 ORTHO05D004799 7.3e-21 103.2 53 77.4
CAN.G998.13 Capsicum annuum HOM05D003542 ORTHO05D004799 7.3e-21 103.2 55 76.4
HanXRQChr17g0537331 Helianthus annuus HOM05D003542 ORTHO05D004799 7.3e-21 103.2 51 80.4
Medtr5g025590 Medicago truncatula HOM05D003542 ORTHO05D004799 7.3e-21 103.2 53 75.5
Nitab4.5_0006371g0020 Nicotiana tabacum HOM05D003542 ORTHO05D004799 7.3e-21 103.2 55 76.4
Ca_22456_v3 Cicer arietinum L. HOM05D003542 ORTHO05D004799 9.5e-21 102.8 53 77.4
Glyma.11G091000 Glycine max HOM05D003542 ORTHO05D004799 9.5e-21 102.8 53 77.4
Potri.004G235800 Populus trichocarpa HOM05D003542 ORTHO05D004799 9.5e-21 102.8 53 77.4
GSVIVG01036881001 Vitis vinifera HOM05D003542 ORTHO05D004799 9.5e-21 102.8 52 76.9
Phvul.002G122000 Phaseolus vulgaris HOM05D003542 ORTHO05D004799 1.2e-20 102.4 53 77.4
Glyma.01G153600 Glycine max HOM05D003542 ORTHO05D004799 1.6e-20 102.1 53 77.4
HanXRQChr17g0537321 Helianthus annuus HOM05D003542 ORTHO05D004799 2.1e-20 101.7 55 74.5
VMungo1215G0924 Vigna mungo HOM05D003542 ORTHO05D004799 2.1e-20 101.7 53 77.4
Nn3g19110 Nelumbo nucifera HOM05D003542 ORTHO05D004799 2.8e-20 101.3 55 70.9
TPR.G14272 Trifolium pratense HOM05D003542 ORTHO05D004799 2.8e-20 101.3 53 77.4
VMungo0251G1439 Vigna mungo HOM05D003542 ORTHO05D004799 8.0e-20 99.8 53 73.6
Lalb_Chr05g0229201 Lupinus albus HOM05D003542 ORTHO05D004799 3.1e-19 97.8 53 73.6
ATR0568G062 Amborella trichopoda HOM05D003542 ORTHO05D004799 5.2e-19 97.1 52 76.9
Lj2g0004183 Lotus japonicus HOM05D003542 ORTHO05D004799 5.2e-19 97.1 52 73.1
MBI06_g04285_MAGBIO Magnolia biondii HOM05D003542 ORTHO05D018761 8.9e-19 96.3 57 70.2
Mapoly0019s0126 Marchantia polymorpha HOM05D003542 ORTHO05D004799 8.9e-19 96.3 52 73.1
SEGI_27818 Sequoiadendron giganteum HOM05D003542 ORTHO05D004799 3.4e-18 94.4 54 72.2
Pp3c12_18450 Physcomitrium patens HOM05D003542 ORTHO05D004799 4.9e-17 90.5 53 66.0
CDE01G0249 Ceratophyllum demersum HOM05D003542 ORTHO05D004799 6.4e-17 90.1 47 72.3
SMO329G0009 Selaginella moellendorffii HOM05D003542 ORTHO05D004799 8.3e-17 89.7 50 68.0
Sed0027808 Sechium edule HOM05D003542 ORTHO05D004799 5.4e-16 87.0 44 77.3
AagrBONN_evm.TU.Sc2ySwM_344.2406 Anthoceros agrestis HOM05D003542 ORTHO05D004799 1.2e-15 85.9 54 57.4
Aa31LG2G14340 Aethionema arabicum HOM05D003542 ORTHO05D004799 2.0e-15 85.1 54 66.7
Lalb_Chr16g0391801 Lupinus albus HOM05D003542 ORTHO05D004799 6.6e-14 80.1 53 56.6
THA.LOC104814389 Tarenaya hassleriana HOM05D003542 ORTHO05D004799 2.5e-13 78.2 37 86.5
Cc04_g11580 Coffea canephora HOM05D003542 ORTHO05D004799 1.6e-07 58.9 47 59.6


User provided reference genes

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