Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28828 Brassica carinata HOM05D006595 ORTHO05D008238 5.3e-91 337.8 189 100.0
C04p64040 Brassica napus HOM05D006595 ORTHO05D008238 1.0e-86 323.6 189 95.8
A04p26620 Brassica napus HOM05D006595 ORTHO05D008238 4.0e-86 321.6 189 95.2
BraA04t18167Z Brassica rapa HOM05D006595 ORTHO05D008238 7.5e-85 317.4 189 94.2
BolC4t27880H Brassica oleracea HOM05D006595 ORTHO05D008238 4.8e-84 314.7 189 93.7
BcaC02g07751 Brassica carinata HOM05D006595 ORTHO05D008238 1.8e-83 312.8 189 93.1
Thhalv10017283m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 2.8e-76 288.9 189 89.4
Sp4g17140 Schrenkiella parvula HOM05D006595 ORTHO05D008238 1.4e-75 286.6 189 87.8
C04p13910 Brassica napus HOM05D006595 ORTHO05D008238 1.6e-74 283.1 189 87.8
BolC4t22980H Brassica oleracea HOM05D006595 ORTHO05D008238 1.6e-74 283.1 189 87.8
BcaC02g11570 Brassica carinata HOM05D006595 ORTHO05D008238 3.8e-73 278.5 190 87.4
BraA05t20025Z Brassica rapa HOM05D006595 ORTHO05D008238 6.6e-73 277.7 189 85.7
A05p10810 Brassica napus HOM05D006595 ORTHO05D008238 1.6e-71 273.1 190 85.3
AT2G34860 Arabidopsis thaliana HOM05D006595 ORTHO05D008238 4.4e-69 265.0 189 82.5
Carub.0004s1654 Capsella rubella HOM05D006595 ORTHO05D008238 4.6e-66 255.0 192 81.8
CARHR129020 Cardamine hirsuta HOM05D006595 ORTHO05D008238 1.5e-64 250.0 191 82.2
Aa31sc409G10 Aethionema arabicum HOM05D006595 ORTHO05D008238 5.8e-61 238.0 190 78.4
AL4G30870 Arabidopsis lyrata HOM05D006595 ORTHO05D008238 6.2e-55 218.0 206 59.7
BcaC07g42181 Brassica carinata HOM05D006595 ORTHO05D008238 1.3e-49 200.3 150 70.7
THA.LOC104815114 Tarenaya hassleriana HOM05D006595 ORTHO05D008238 1.1e-46 190.7 195 68.7
BcaB01g02723 Brassica carinata HOM05D006595 ORTHO05D008238 2.1e-42 176.4 150 66.0
Prupe.6G012000 Prunus persica HOM05D006595 ORTHO05D008238 2.8e-39 166.0 188 63.8
CsaV3_4G023550 Cucumis sativus L. HOM05D006595 ORTHO05D008238 3.6e-39 165.6 190 63.7
QL01p010272 Quercus lobata HOM05D006595 ORTHO05D008238 3.6e-39 165.6 190 61.6
PGR102G3301 Punica granatum HOM05D006595 ORTHO05D008238 1.1e-38 164.1 190 58.4
MELO3C014661.2 Cucumis melo HOM05D006595 ORTHO05D008238 2.4e-38 162.9 188 63.8
ClCG02G023820 Citrullus lanatus HOM05D006595 ORTHO05D008238 4.0e-38 162.2 189 63.0
Atru.chr3.2190 Acer truncatum HOM05D006595 ORTHO05D008238 1.2e-37 160.6 191 62.8
MD03G1011600 Malus domestica HOM05D006595 ORTHO05D008238 2.0e-37 159.8 188 64.4
Sed0019652 Sechium edule HOM05D006595 ORTHO05D008238 2.6e-37 159.5 189 62.4
CiPaw.13G171400 Carya illinoinensis HOM05D006595 ORTHO05D008238 9.9e-37 157.5 190 60.5
TWI34G0416 Tripterygium wilfordii HOM05D006595 ORTHO05D008238 1.7e-36 156.8 190 61.6
Manes.03G089200 Manihot esculenta HOM05D006595 ORTHO05D008238 2.9e-36 156.0 191 59.2
Cfa009626 Carpinus fangiana HOM05D006595 ORTHO05D008238 6.4e-36 154.8 190 60.5
Haze_22995 Corylus avellana HOM05D006595 ORTHO05D008238 8.4e-36 154.5 190 60.5
Ciclev10016858m.g Citrus clementina HOM05D006595 ORTHO05D008238 1.1e-35 154.1 191 61.3
FvH4_3g44681 Fragaria vesca HOM05D006595 ORTHO05D008238 1.4e-35 153.7 186 59.7
Peaxi162Scf00441g00213 Petunia axillaris HOM05D006595 ORTHO05D008238 1.4e-35 153.7 192 59.9
Sopen01g002130 Solanum pennellii HOM05D006595 ORTHO05D008238 1.9e-35 153.3 195 57.9
FAN17G0104 Fragaria x ananassa HOM05D000005 ORTHO05D000012 3.2e-35 152.5 188 60.6
PGSC0003DMG401032143 Solanum tuberosum HOM05D006595 ORTHO05D008238 4.2e-35 152.1 195 59.5
RcHm_v2.0_Chr5g0081351 Rosa chinensis HOM05D006595 ORTHO05D008238 7.1e-35 151.4 186 60.2
Cpa.g.sc119.91 Carica papaya HOM05D006595 ORTHO05D008238 9.3e-35 151.0 188 59.6
FAN25G3451 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.2e-34 150.6 186 59.1
Duzib168G0997 Durio zibethinus HOM05D006595 ORTHO05D008238 1.6e-34 150.2 182 62.1
CANSAT11G0726 Cannabis sativa HOM05D006595 ORTHO05D008238 2.7e-34 149.4 190 58.4
Dinv34743 Davidia involucrata HOM05D006595 ORTHO05D008238 2.7e-34 149.4 133 74.4
BcaB06g29011 Brassica carinata HOM05D006595 ORTHO05D008238 3.5e-34 149.1 151 60.3
Dinv13419 Davidia involucrata HOM05D006595 ORTHO05D008238 3.5e-34 149.1 182 62.1
Potri.001G009800 Populus trichocarpa HOM05D006595 ORTHO05D008238 3.0e-33 146.0 188 58.0
CSS0011176 Camellia sinensis var. sinensis HOM05D006595 ORTHO05D008238 3.9e-33 145.6 144 70.8
SalBow6G7140 Salvia bowleyana HOM05D006595 ORTHO05D008238 3.9e-33 145.6 194 57.2
EL10Ac4g10339 Beta vulgaris HOM05D006595 ORTHO05D008238 5.1e-33 145.2 190 55.8
Psat6g238960 Pisum sativum HOM05D006595 ORTHO05D008238 1.5e-32 143.7 170 61.8
FAN21G3045 Fragaria x ananassa HOM05D000750 ORTHO05D000714 1.9e-32 143.3 164 61.6
TAR636G1600 Trochodendron aralioides HOM05D006595 ORTHO05D008238 1.9e-32 143.3 153 64.1
Gohir.A08G079300 Gossypium hirsutum HOM05D006595 ORTHO05D008238 2.5e-32 142.9 180 60.0
Lj2A706G26 Lonicera japonica HOM05D006595 ORTHO05D008238 2.5e-32 142.9 135 70.4
Lj5g0010961 Lotus japonicus HOM05D006595 ORTHO05D008238 2.5e-32 142.9 147 68.7
Phvul.007G006200 Phaseolus vulgaris HOM05D006595 ORTHO05D008238 3.3e-32 142.5 172 61.0
Rhsim13G0228400 Rhododendron simsii HOM05D000750 ORTHO05D000714 4.3e-32 142.1 163 62.0
FAN16G1668 Fragaria x ananassa HOM05D000750 ORTHO05D000714 5.6e-32 141.7 164 61.6
CAN.G140.24 Capsicum annuum HOM05D006595 ORTHO05D008238 9.6e-32 141.0 164 62.2
ECA248G3199 Erigeron canadensis HOM05D006595 ORTHO05D008238 9.6e-32 141.0 175 56.6
Nn7g35969 Nelumbo nucifera HOM05D006595 ORTHO05D008238 9.6e-32 141.0 197 56.9
Solyc01g006130.4 Solanum lycopersicum HOM05D006595 ORTHO05D008238 9.6e-32 141.0 191 57.6
SGA_v2.0_scaffold78G25462 Striga asiatica HOM05D006595 ORTHO05D008238 9.6e-32 141.0 179 60.3
Nitab4.5_0005477g0080 Nicotiana tabacum HOM05D006595 ORTHO05D008238 1.6e-31 140.2 194 49.0
Gohir.A11G206900 Gossypium hirsutum HOM05D006595 ORTHO05D008238 2.1e-31 139.8 191 57.6
TPR.G10430 Trifolium pratense HOM05D006595 ORTHO05D008238 2.1e-31 139.8 126 73.0
CDE04G0274 Ceratophyllum demersum HOM05D006595 ORTHO05D008238 4.8e-31 138.7 196 55.6
Migut.F01376 Erythranthe guttata HOM05D006595 ORTHO05D008238 6.2e-31 138.3 151 64.9
Gohir.D08G088800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 6.2e-31 138.3 180 59.4
Gorai.007G232900 Gossypium raimondii HOM05D006595 ORTHO05D008238 8.1e-31 137.9 156 64.1
Nitab4.5_0001620g0030 Nicotiana tabacum HOM05D006595 ORTHO05D008238 8.1e-31 137.9 194 48.5
Gorai.004G093500 Gossypium raimondii HOM05D006595 ORTHO05D008238 1.1e-30 137.5 180 59.4
Lj2A705G49 Lonicera japonica HOM05D006595 ORTHO05D008238 1.4e-30 137.1 134 56.0
AUR62019207 Chenopodium quinoa HOM05D006595 ORTHO05D008238 3.1e-30 136.0 139 66.9
Gohir.D11G216800 Gossypium hirsutum HOM05D006595 ORTHO05D008238 3.1e-30 136.0 191 56.5
Sabra01G0007800 Salix brachista HOM05D006595 ORTHO05D008238 3.1e-30 136.0 213 52.1
Medtr1g116170 Medicago truncatula HOM05D006595 ORTHO05D008238 5.3e-30 135.2 168 58.9
PSO384G3168 Papaver somniferum HOM05D006595 ORTHO05D008238 5.3e-30 135.2 184 54.9
PSO339G5391 Papaver somniferum HOM05D006595 ORTHO05D008238 6.9e-30 134.8 184 54.3
Os08g0463900 Oryza sativa ssp. japonica HOM05D006595 ORTHO05D008238 1.2e-29 134.0 146 62.3
BcaB01g03109 Brassica carinata HOM05D006595 ORTHO05D008238 1.5e-29 133.7 80 78.8
Eucgr.B03632 Eucalyptus grandis HOM05D006595 ORTHO05D008238 1.5e-29 133.7 196 54.6
Oeu038858.2 Olea europaea HOM05D006595 ORTHO05D008238 1.5e-29 133.7 190 57.4
AUR62000037 Chenopodium quinoa HOM05D006595 ORTHO05D008238 2.6e-29 132.9 189 54.5
GSVIVG01025384001 Vitis vinifera HOM05D006595 ORTHO05D008238 3.4e-29 132.5 151 62.9
Glyma.10G293900 Glycine max HOM05D006595 ORTHO05D008238 1.3e-28 130.6 166 60.2
ATR1149G131 Amborella trichopoda HOM05D006595 ORTHO05D008238 4.9e-28 128.6 87 93.1
Cc01_g00990 Coffea canephora HOM05D006595 ORTHO05D008238 4.9e-28 128.6 194 53.6
Lalb_Chr02g0143771 Lupinus albus HOM05D006595 ORTHO05D008238 6.4e-28 128.3 141 67.4
Aqoxy2G00094 Aquilegia oxysepala HOM05D006595 ORTHO05D008238 8.4e-28 127.9 157 57.3
Glyma.20G243800 Glycine max HOM05D006595 ORTHO05D008238 1.1e-27 127.5 104 80.8
Ah.04g161600 Amaranthus hybridus HOM05D000750 ORTHO05D000714 1.4e-27 127.1 138 61.6
Pp3c3_12490 Physcomitrium patens HOM05D006595 ORTHO05D008238 2.4e-27 126.3 142 61.3
arahy.Tifrunner.gnm1.ann1.ZL64GD Arachis hypogaea HOM05D006595 ORTHO05D008238 5.4e-27 125.2 165 58.2
Ca_11377_v3 Cicer arietinum L. HOM05D001261 ORTHO05D001130 5.4e-27 125.2 171 57.3
MSTRG.208 Avicennia marina HOM05D006595 ORTHO05D008238 7.1e-27 124.8 152 64.5
MSTRG.8324 Avicennia marina HOM05D006595 ORTHO05D008238 3.5e-26 122.5 190 55.8
HPP92_026734 Vanilla planifolia HOM05D006595 ORTHO05D008238 4.6e-26 122.1 88 87.5
Sc16g0012000 Simmondsia chinensis HOM05D006595 ORTHO05D008238 6.0e-26 121.7 172 54.1
Thecc.09G215500 Theobroma cacao HOM05D006595 ORTHO05D008238 6.0e-26 121.7 142 55.6
AagrBONN_evm.TU.Sc2ySwM_228.4531 Anthoceros agrestis HOM05D006546 ORTHO05D008362 7.9e-26 121.3 158 62.0
HPP92_016182 Vanilla planifolia HOM05D006595 ORTHO05D008238 3.0e-25 119.4 171 55.0
SEGI_11759 Sequoiadendron giganteum HOM05D006595 ORTHO05D008238 1.9e-24 116.7 169 52.7
SMO331G0037 Selaginella moellendorffii HOM05D006595 ORTHO05D008238 4.3e-24 115.5 93 79.6
COL.COLO4_10447 Corchorus olitorius HOM05D006595 ORTHO05D008238 9.6e-24 114.4 200 41.5
Hund06674 Selenicereus undatus HOM05D006595 ORTHO05D008238 4.8e-23 112.1 128 67.2
Mapoly0120s0023 Marchantia polymorpha HOM05D006595 ORTHO05D008238 1.1e-22 110.9 156 52.6
CBR_g22940 Chara braunii HOM05D006595 ORTHO05D008238 1.4e-22 110.5 170 47.6
arahy.Tifrunner.gnm1.ann1.SSSL8J Arachis hypogaea HOM05D006595 ORTHO05D008238 9.0e-22 107.8 157 55.4
unitig_747.g21415 Utricularia gibba HOM05D006595 ORTHO05D008238 1.2e-21 107.5 177 53.1
MD11G1014500 Malus domestica HOM05D006595 ORTHO05D008238 2.0e-21 106.7 74 70.3
Thhalv10011829m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 7.6e-21 104.8 65 80.0
QL01p010258 Quercus lobata HOM05D006595 ORTHO05D008238 7.6e-21 104.8 152 46.7
QL08p062509 Quercus lobata HOM05D006595 ORTHO05D008238 7.6e-21 104.8 152 46.7
vmacro04249 Vaccinium macrocarpon HOM05D006595 ORTHO05D008238 9.9e-21 104.4 296 32.1
FAN11G2269 Fragaria x ananassa HOM05D000750 ORTHO05D000714 2.9e-20 102.8 74 66.2
Lsat_1_v5_gn_1_68280 Lactuca sativa HOM05D006595 ORTHO05D008238 2.9e-20 102.8 141 47.5
FAN16G0514 Fragaria x ananassa HOM05D000005 ORTHO05D000012 4.9e-20 102.1 77 64.9
FvH4_3g44571 Fragaria vesca HOM05D006595 ORTHO05D008238 4.2e-19 99.0 74 63.5
VMungo0720G3035 Vigna mungo HOM05D006595 ORTHO05D008238 9.3e-19 97.8 124 49.2
HanXRQChr11g0344931 Helianthus annuus HOM05D006595 ORTHO05D008238 2.7e-18 96.3 127 42.5
PRCOL_00006415 Prasinoderma coloniale HOM05D006595 ORTHO05D008238 1.9e-16 90.1 86 70.9
Cre11.g475850 Chlamydomonas reinhardtii HOM05D006595 ORTHO05D008238 1.4e-14 84.0 176 36.9
Thhalv10012349m.g Eutrema salsugineum HOM05D006595 ORTHO05D008238 9.0e-14 81.3 61 68.9
MCO03G122 Micromonas commoda HOM05D006595 ORTHO05D008238 3.4e-13 79.3 196 42.9
Pp3c4_29200 Physcomitrium patens HOM05D006595 ORTHO05D008238 3.7e-07 59.3 117 34.2
C08p10520 Brassica napus HOM05D015077 ORTHO05D020174 1.1e-06 57.8 159 35.2


User provided reference genes

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