Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28772 Brassica carinata HOM05D005716 ORTHO05D007885 8.8e-151 537.0 276 100.0
C04p63810 Brassica napus HOM05D005716 ORTHO05D007885 1.7e-149 532.7 276 98.2
BraA04t18144Z Brassica rapa HOM05D005716 ORTHO05D007885 9.1e-148 526.9 277 97.1
BolC4t27848H Brassica oleracea HOM05D005716 ORTHO05D007885 1.4e-145 519.6 276 96.0
CARHR128550 Cardamine hirsuta HOM05D005716 ORTHO05D007885 1.3e-141 506.5 276 94.2
Thhalv10017058m.g Eutrema salsugineum HOM05D005716 ORTHO05D007885 2.8e-141 505.4 259 95.0
Sp4g16740 Schrenkiella parvula HOM05D005716 ORTHO05D007885 1.8e-140 502.7 276 91.7
Aa31LG10G6910 Aethionema arabicum HOM05D005716 ORTHO05D007885 1.2e-139 500.0 254 95.3
AL4G30440 Arabidopsis lyrata HOM05D005716 ORTHO05D007885 2.0e-139 499.2 278 93.9
AT2G34470 Arabidopsis thaliana HOM05D005716 ORTHO05D007885 1.0e-138 496.9 277 93.5
Carub.0004s1614 Capsella rubella HOM05D005716 ORTHO05D007885 3.2e-137 491.9 258 93.8
THA.LOC104812667 Tarenaya hassleriana HOM05D005716 ORTHO05D007885 8.0e-136 487.3 277 91.0
Sopen02g019750 Solanum pennellii HOM05D005716 ORTHO05D007885 1.4e-135 486.5 249 93.2
Solyc02g070670.4 Solanum lycopersicum HOM05D005716 ORTHO05D007885 5.2e-135 484.6 249 92.4
PGSC0003DMG400008287 Solanum tuberosum HOM05D005716 ORTHO05D007885 8.8e-135 483.8 249 92.8
MD10G1263700 Malus domestica HOM05D005716 ORTHO05D007885 4.4e-134 481.5 249 92.8
Nitab4.5_0005219g0060 Nicotiana tabacum HOM05D005716 ORTHO05D007885 1.3e-133 479.9 249 91.6
Atru.chr10.1272 Acer truncatum HOM05D005716 ORTHO05D007885 4.8e-133 478.0 255 90.6
RcHm_v2.0_Chr5g0013751 Rosa chinensis HOM05D005716 ORTHO05D007885 1.4e-132 476.5 249 91.6
Nn3g20701 Nelumbo nucifera HOM05D005716 ORTHO05D007885 1.8e-132 476.1 249 91.2
CAN.G650.23 Capsicum annuum HOM05D005716 ORTHO05D007885 2.4e-132 475.7 249 90.8
Peaxi162Scf00022g00310 Petunia axillaris HOM05D005716 ORTHO05D007885 4.1e-132 474.9 249 90.8
TAR627G0480 Trochodendron aralioides HOM05D005716 ORTHO05D007885 4.1e-132 474.9 259 89.2
EL10Ac8g19740 Beta vulgaris HOM05D005716 ORTHO05D007885 5.3e-132 474.6 256 88.7
CsaV3_1G032590 Cucumis sativus L. HOM05D005716 ORTHO05D007885 5.3e-132 474.6 252 90.9
Lj1A1186G50 Lonicera japonica HOM05D005716 ORTHO05D007885 5.3e-132 474.6 249 90.8
Manes.17G068800 Manihot esculenta HOM05D005716 ORTHO05D007885 7.0e-132 474.2 249 91.2
Thecc.06G152400 Theobroma cacao HOM05D005716 ORTHO05D007885 7.0e-132 474.2 247 91.9
SGA_v2.0_scaffold106G30642 Striga asiatica HOM05D005716 ORTHO05D007885 9.1e-132 473.8 249 90.8
Aqoxy4G00105 Aquilegia oxysepala HOM05D005716 ORTHO05D007885 2.0e-131 472.6 255 88.6
Ciclev10016173m.g Citrus clementina HOM05D005716 ORTHO05D007885 2.0e-131 472.6 259 87.6
CiPaw.09G125500 Carya illinoinensis HOM05D005716 ORTHO05D007885 2.7e-131 472.2 255 90.2
Prupe.4G079000 Prunus persica HOM05D005716 ORTHO05D007885 2.7e-131 472.2 255 89.8
QL05p058825 Quercus lobata HOM05D005716 ORTHO05D007885 2.7e-131 472.2 254 90.2
FAN21G0047 Fragaria x ananassa HOM05D005716 ORTHO05D007885 3.5e-131 471.9 249 90.4
MD05G1285700 Malus domestica HOM05D005716 ORTHO05D007885 3.5e-131 471.9 249 91.2
arahy.Tifrunner.gnm1.ann1.16PV68 Arachis hypogaea HOM05D005716 ORTHO05D007885 4.5e-131 471.5 252 89.7
arahy.Tifrunner.gnm1.ann1.MD42KV Arachis hypogaea HOM05D005716 ORTHO05D007885 4.5e-131 471.5 252 89.7
TWI09G1196 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 4.5e-131 471.5 249 91.6
FvH4_3g05780 Fragaria vesca HOM05D005716 ORTHO05D007885 5.9e-131 471.1 249 90.4
FAN11G1575 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.9e-131 471.1 249 90.4
MBI07_g26370_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 5.9e-131 471.1 252 90.5
QL05p058849 Quercus lobata HOM05D005716 ORTHO05D007885 7.7e-131 470.7 254 89.8
DCAR_005122 Daucus carota HOM05D005716 ORTHO05D007885 1.0e-130 470.3 254 89.4
Duzib235G0716 Durio zibethinus HOM05D005716 ORTHO05D007885 1.0e-130 470.3 247 91.9
MBI07_g15285_MAGBIO Magnolia biondii HOM05D005716 ORTHO05D007885 1.3e-130 469.9 252 90.1
COL.COLO4_31094 Corchorus olitorius HOM05D005716 ORTHO05D007885 1.7e-130 469.5 247 91.5
FAN16G2159 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.7e-130 469.5 249 90.0
Sc05g0006370 Simmondsia chinensis HOM05D005716 ORTHO05D007885 1.7e-130 469.5 252 89.3
Cc09_g09370 Coffea canephora HOM05D005716 ORTHO05D007885 3.8e-130 468.4 249 90.0
PGR042G3684 Punica granatum HOM05D005716 ORTHO05D007885 5.0e-130 468.0 252 88.9
GSVIVG01021429001 Vitis vinifera HOM05D005716 ORTHO05D007885 6.5e-130 467.6 249 89.2
VMungo0251G2847 Vigna mungo HOM05D005716 ORTHO05D007885 1.1e-129 466.8 253 89.7
Eucgr.E02383 Eucalyptus grandis HOM05D005716 ORTHO05D007885 1.5e-129 466.5 252 88.9
Lalb_Chr07g0188621 Lupinus albus HOM05D005716 ORTHO05D007885 2.5e-129 465.7 249 90.4
Phvul.002G193800 Phaseolus vulgaris HOM05D005716 ORTHO05D007885 2.5e-129 465.7 249 90.4
Potri.002G243500 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.5e-129 465.7 249 90.4
Potri.002G243700 Populus trichocarpa HOM05D005716 ORTHO05D007885 2.5e-129 465.7 249 90.4
CANSAT80G0786 Cannabis sativa HOM05D005716 ORTHO05D007885 3.2e-129 465.3 249 88.8
Rhsim07G0173200 Rhododendron simsii HOM05D005716 ORTHO05D007885 3.2e-129 465.3 263 85.9
Eucgr.E02408 Eucalyptus grandis HOM05D005716 ORTHO05D007885 4.2e-129 464.9 252 88.5
Gohir.D10G040400 Gossypium hirsutum HOM05D005716 ORTHO05D007885 5.5e-129 464.5 247 91.5
TPR.G4903 Trifolium pratense HOM05D005716 ORTHO05D007885 7.2e-129 464.2 249 90.0
ECA232G4567 Erigeron canadensis HOM05D005716 ORTHO05D007885 9.4e-129 463.8 252 87.7
Gorai.011G042600 Gossypium raimondii HOM05D005716 ORTHO05D007885 1.2e-128 463.4 247 91.1
Sabra02G0185400 Salix brachista HOM05D005716 ORTHO05D007885 1.2e-128 463.4 249 89.6
Glyma.08G084800 Glycine max HOM05D005716 ORTHO05D007885 1.6e-128 463.0 249 89.6
Dinv32271 Davidia involucrata HOM05D005716 ORTHO05D007885 2.1e-128 462.6 242 92.1
Actinidia07685 Actinidia chinensis HOM05D005716 ORTHO05D007885 2.7e-128 462.2 249 91.2
CDE02G4127 Ceratophyllum demersum HOM05D005716 ORTHO05D007885 2.7e-128 462.2 255 87.5
AUR62027525 Chenopodium quinoa HOM05D005716 ORTHO05D007885 3.6e-128 461.8 244 91.4
Ca_18267_v3 Cicer arietinum L. HOM05D005716 ORTHO05D007885 3.6e-128 461.8 255 87.8
HanXRQChr08g0230021 Helianthus annuus HOM05D005716 ORTHO05D007885 3.6e-128 461.8 249 89.2
Medtr4g096770 Medicago truncatula HOM05D005716 ORTHO05D007885 3.6e-128 461.8 249 89.6
SalBow7G1512 Salvia bowleyana HOM05D005716 ORTHO05D007885 3.6e-128 461.8 249 88.4
Migut.H01369 Erythranthe guttata HOM05D005716 ORTHO05D007885 8.0e-128 460.7 249 88.8
Lsat_1_v5_gn_1_96721 Lactuca sativa HOM05D005716 ORTHO05D007885 8.0e-128 460.7 252 88.1
unitig_32.g11441 Utricularia gibba HOM05D005716 ORTHO05D007885 8.0e-128 460.7 246 88.6
MSTRG.13250 Avicennia marina HOM05D005716 ORTHO05D007885 1.0e-127 460.3 249 88.0
SEGI_04817 Sequoiadendron giganteum HOM05D005716 ORTHO05D007885 1.8e-127 459.5 249 87.6
ATR0585G042 Amborella trichopoda HOM05D005716 ORTHO05D007885 5.2e-127 458.0 249 88.4
Psat7g090160 Pisum sativum HOM05D005716 ORTHO05D007885 1.2e-126 456.8 249 88.4
Oeu030916.2 Olea europaea HOM05D005716 ORTHO05D007885 1.5e-126 456.4 273 82.4
PSO017G0333 Papaver somniferum HOM05D005716 ORTHO05D007885 2.0e-126 456.1 246 88.6
TWI09G0986 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 2.6e-126 455.7 245 90.2
TWI53G0431 Tripterygium wilfordii HOM05D005716 ORTHO05D007885 1.7e-125 453.0 247 88.3
HPP92_010050 Vanilla planifolia HOM05D005716 ORTHO05D007885 7.0e-124 447.6 247 87.0
Sed0010647 Sechium edule HOM05D005716 ORTHO05D007885 9.1e-124 447.2 251 86.9
Mapoly0128s0016 Marchantia polymorpha HOM05D005716 ORTHO05D007885 1.1e-121 440.3 248 83.9
PSO478G1410 Papaver somniferum HOM05D005716 ORTHO05D007885 4.2e-121 438.3 247 85.8
Os05g0565200 Oryza sativa ssp. japonica HOM05D005716 ORTHO05D007885 1.2e-120 436.8 254 85.0
MELO3C002721.2 Cucumis melo HOM05D005716 ORTHO05D007885 6.8e-119 431.0 225 93.3
Cpa.g.sc166.24 Carica papaya HOM05D005716 ORTHO05D007885 2.0e-118 429.5 290 81.0
Pp3c24_19130 Physcomitrium patens HOM05D005716 ORTHO05D007885 4.9e-117 424.9 247 81.4
SMO353G0068 Selaginella moellendorffii HOM05D005716 ORTHO05D007885 8.3e-117 424.1 250 81.2
Zm00001eb343840 Zea mays HOM05D005716 ORTHO05D007885 4.1e-116 421.8 228 89.9
ClCG03G007040 Citrullus lanatus HOM05D005716 ORTHO05D007885 1.2e-115 420.2 251 82.5
vmacro17882 Vaccinium macrocarpon HOM05D005716 ORTHO05D007885 3.5e-115 418.7 346 64.5
AagrBONN_evm.TU.Sc2ySwM_117.3588 Anthoceros agrestis HOM05D005716 ORTHO05D007885 2.9e-114 415.6 242 82.2
CBR_g38955 Chara braunii HOM05D005716 ORTHO05D007885 9.8e-110 400.6 246 76.8
CSS0037137 Camellia sinensis var. sinensis HOM05D005716 ORTHO05D007885 8.0e-104 380.9 216 87.0
Haze_05577 Corylus avellana HOM05D005716 ORTHO05D007885 1.5e-97 360.1 191 92.1
Hma1.2p1_0286F.1_g114150 Hydrangea macrophylla HOM05D005716 ORTHO05D007885 9.9e-94 347.4 190 88.9
MCO04G141 Micromonas commoda HOM05D005716 ORTHO05D007885 4.9e-93 345.1 256 66.4
RcHm_v2.0_Chr5g0013741 Rosa chinensis HOM05D005716 ORTHO05D007885 8.1e-88 327.8 171 92.4
A04p06350 Brassica napus HOM05D005716 ORTHO05D007885 1.1e-87 327.4 183 90.7
Nitab4.5_0001655g0090 Nicotiana tabacum HOM05D005716 ORTHO05D007885 2.4e-87 326.2 171 91.2
Hund21524 Selenicereus undatus HOM05D005716 ORTHO05D007885 1.1e-84 317.4 181 86.2
PSO017G6742 Papaver somniferum HOM05D005716 ORTHO05D007885 7.1e-84 314.7 168 91.1
Gohir.A10G039600 Gossypium hirsutum HOM05D005716 ORTHO05D007885 5.1e-82 308.5 161 91.9
PRCOL_00002216 Prasinoderma coloniale HOM05D005716 ORTHO05D007885 5.4e-76 288.5 185 75.7
C04p39880 Brassica napus HOM05D005716 ORTHO05D007885 2.1e-75 286.6 147 98.0
BcaC02g09191 Brassica carinata HOM05D005716 ORTHO05D031863 7.8e-75 284.6 145 97.9
BolC4t25559H Brassica oleracea HOM05D005716 ORTHO05D007885 7.8e-75 284.6 155 94.2
FAN17G1884 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.1e-74 282.0 164 85.4
BraA04t16339Z Brassica rapa HOM05D005716 ORTHO05D007885 1.1e-73 280.8 155 92.9
FAN23G0273 Fragaria x ananassa HOM05D005716 ORTHO05D007885 5.6e-73 278.5 164 82.9
FAN25G2810 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-72 276.9 164 84.1
FAN25G0382 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.4e-68 263.1 171 76.0
FAN02G1132 Fragaria x ananassa HOM05D005716 ORTHO05D007885 2.1e-67 260.0 213 66.2
AUR62030221 Chenopodium quinoa HOM05D005716 ORTHO05D007885 5.1e-66 255.4 148 82.4
RcHm_v2.0_Chr5g0013721 Rosa chinensis HOM05D005716 ORTHO05D007885 7.4e-65 251.5 156 79.5
RcHm_v2.0_Chr5g0013731 Rosa chinensis HOM05D005716 ORTHO05D007885 5.5e-60 235.3 148 79.1
Haze_26810 Corylus avellana HOM05D005716 ORTHO05D164461 1.9e-52 210.3 191 55.5
FAN02G0019 Fragaria x ananassa HOM05D005716 ORTHO05D007885 1.6e-51 207.2 151 71.5
Dinv30725 Davidia involucrata HOM05D005716 ORTHO05D007885 2.1e-51 206.8 141 74.5
AUR62030223 Chenopodium quinoa HOM05D005716 ORTHO05D044022 8.2e-40 168.3 167 56.9
MSTRG.14769 Avicennia marina HOM05D005716 ORTHO05D007885 2.4e-39 166.8 93 84.9
FAN08G0336 Fragaria x ananassa HOM05D005716 ORTHO05D044022 4.1e-31 139.4 76 90.8
arahy.Tifrunner.gnm1.ann1.8LN2Z6 Arachis hypogaea HOM05D005716 ORTHO05D087704 4.2e-28 129.4 190 45.3
VMungo1309G0118 Vigna mungo HOM05D005716 ORTHO05D437644 3.0e-26 123.2 71 84.5
Dinv30726 Davidia involucrata HOM05D005716 ORTHO05D014961 1.7e-24 117.5 64 84.4
CAN.G94.3 Capsicum annuum HOM05D005716 ORTHO05D115662 2.8e-24 116.7 93 62.4
C05p14270 Brassica napus HOM05D013073 ORTHO05D014961 1.9e-20 104.0 55 87.3
C06p00300 Brassica napus HOM05D013073 ORTHO05D014961 5.5e-20 102.4 55 85.5
A04p26400 Brassica napus HOM05D005716 ORTHO05D099386 3.6e-19 99.8 46 100.0
BcaC08g42818 Brassica carinata HOM05D013073 ORTHO05D014961 3.0e-18 96.7 50 88.0


User provided reference genes

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