Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28489 Brassica carinata HOM05D001880 ORTHO05D020102 3.3e-98 361.7 180 100.0
BcaC08g45419 Brassica carinata HOM05D001880 ORTHO05D020102 2.5e-69 265.8 180 80.6
C06p30510 Brassica napus HOM05D001880 ORTHO05D020102 6.5e-62 241.1 211 67.3
C04p60340 Brassica napus HOM05D001880 ORTHO05D020102 9.7e-42 174.1 83 98.8
BolC4t27535H Brassica oleracea HOM05D001880 ORTHO05D020102 2.8e-41 172.6 83 97.6
BolC6t35463H Brassica oleracea HOM05D001880 ORTHO05D020102 8.9e-19 97.8 47 100.0
BolC6t38214H Brassica oleracea HOM05D001880 ORTHO05D020102 8.9e-19 97.8 47 100.0
C03p85230 Brassica napus HOM05D001880 ORTHO05D004730 4.4e-18 95.5 47 97.9
A01p05590 Brassica napus HOM05D001880 ORTHO05D004730 7.8e-15 84.7 47 87.2
A10p26590 Brassica napus HOM05D001880 ORTHO05D004730 7.8e-15 84.7 47 87.2
C01p06170 Brassica napus HOM05D001880 ORTHO05D004730 7.8e-15 84.7 47 87.2
BolC1t00615H Brassica oleracea HOM05D001880 ORTHO05D004730 7.8e-15 84.7 47 87.2
BraA01t00530Z Brassica rapa HOM05D001880 ORTHO05D004730 7.8e-15 84.7 47 87.2
BraA01t03248Z Brassica rapa HOM05D001880 ORTHO05D004730 7.8e-15 84.7 47 87.2
BraA10t44716Z Brassica rapa HOM05D001880 ORTHO05D004730 7.8e-15 84.7 47 87.2
Sp7g30490 Schrenkiella parvula HOM05D001880 ORTHO05D004730 7.8e-15 84.7 47 87.2
BcaC09g52067 Brassica carinata HOM05D001880 ORTHO05D004730 1.3e-14 84.0 47 87.2
Carub.0007s0776 Capsella rubella HOM05D001880 ORTHO05D004730 5.0e-14 82.0 47 83.0
AL7G19020 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 6.6e-14 81.6 47 80.9
AT4G32720 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 6.6e-14 81.6 47 80.9
Thhalv10025209m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 1.1e-13 80.9 47 80.9
BcaNung06641 Brassica carinata HOM05D001880 ORTHO05D004730 3.3e-13 79.3 47 78.7
C03p87060 Brassica napus HOM05D001880 ORTHO05D000054 3.3e-13 79.3 47 78.7
BolC3t21003H Brassica oleracea HOM05D001880 ORTHO05D004730 3.3e-13 79.3 47 78.7
CARHR240720 Cardamine hirsuta HOM05D001880 ORTHO05D004730 3.3e-13 79.3 47 78.7
A08p17950 Brassica napus HOM05D001880 ORTHO05D004730 5.6e-13 78.6 47 76.6
BraA08t33746Z Brassica rapa HOM05D001880 ORTHO05D004730 5.6e-13 78.6 47 76.6
BcaB03g12759 Brassica carinata HOM05D001880 ORTHO05D004730 9.5e-13 77.8 47 76.6
Aa31LG2G17280 Aethionema arabicum HOM05D001880 ORTHO05D004730 1.6e-12 77.0 47 76.6
MSTRG.25899 Avicennia marina HOM05D001880 ORTHO05D004730 2.6e-10 69.7 71 49.3
Aqoxy7G01616 Aquilegia oxysepala HOM05D001880 ORTHO05D004730 5.8e-10 68.6 47 61.7
Phvul.001G061100 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 7.5e-10 68.2 71 47.9
Migut.A00234 Erythranthe guttata HOM05D001880 ORTHO05D004730 9.8e-10 67.8 71 47.9
THA.LOC104803768 Tarenaya hassleriana HOM05D001880 ORTHO05D004730 9.8e-10 67.8 95 38.9
PGSC0003DMG400010836 Solanum tuberosum HOM05D001880 ORTHO05D004730 1.3e-09 67.4 71 49.3
SGA_v2.0_scaffold185G40074 Striga asiatica HOM05D001880 ORTHO05D004730 1.3e-09 67.4 71 49.3
Cpa.g.sc78.77 Carica papaya HOM05D001880 ORTHO05D004730 1.7e-09 67.0 47 57.4
VMungo0647G0420 Vigna mungo HOM05D001880 ORTHO05D004730 1.7e-09 67.0 47 63.8
Atru.chr7.2155 Acer truncatum HOM05D001880 ORTHO05D004730 2.2e-09 66.6 47 61.7
Ciclev10008260m.g Citrus clementina HOM05D001880 ORTHO05D004730 2.2e-09 66.6 47 63.8
Nitab4.5_0000052g0190 Nicotiana tabacum HOM05D001880 ORTHO05D004730 2.2e-09 66.6 71 47.9
Nitab4.5_0007240g0020 Nicotiana tabacum HOM05D001880 ORTHO05D004730 2.2e-09 66.6 71 47.9
CAN.G21.30 Capsicum annuum HOM05D001880 ORTHO05D004730 2.9e-09 66.2 71 47.9
CsaV3_2G031070 Cucumis sativus L. HOM05D001880 ORTHO05D004730 2.9e-09 66.2 47 63.8
Lj7C706T10 Lonicera japonica HOM05D001880 ORTHO05D004730 2.9e-09 66.2 71 45.1
Manes.03G063200 Manihot esculenta HOM05D001880 ORTHO05D004730 2.9e-09 66.2 47 61.7
Oeu012185.1 Olea europaea HOM05D001880 ORTHO05D004730 2.9e-09 66.2 71 46.5
Peaxi162Scf00523g00112 Petunia axillaris HOM05D001880 ORTHO05D004730 2.9e-09 66.2 47 63.8
GSVIVG01035666001 Vitis vinifera HOM05D001880 ORTHO05D004730 2.9e-09 66.2 47 63.8
HanXRQChr07g0190061 Helianthus annuus HOM05D001880 ORTHO05D004730 4.9e-09 65.5 47 63.8
PSO782G2488 Papaver somniferum HOM05D001880 ORTHO05D004730 4.9e-09 65.5 71 45.1
PSO832G4225 Papaver somniferum HOM05D001880 ORTHO05D004730 4.9e-09 65.5 71 45.1
Solyc08g068310.3 Solanum lycopersicum HOM05D001880 ORTHO05D004730 4.9e-09 65.5 71 46.5
MD08G1117800 Malus domestica HOM05D001880 ORTHO05D004730 6.4e-09 65.1 47 61.7
MD15G1097300 Malus domestica HOM05D001880 ORTHO05D004730 6.4e-09 65.1 47 61.7
Sopen08g022160 Solanum pennellii HOM05D001880 ORTHO05D004730 6.4e-09 65.1 71 46.5
TWI63G1191 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 6.4e-09 65.1 47 63.8
TAR626G0413 Trochodendron aralioides HOM05D001880 ORTHO05D004730 6.4e-09 65.1 47 61.7
GSVIVG01035689001 Vitis vinifera HOM05D001880 ORTHO05D004730 8.3e-09 64.7 47 63.8
ATR0315G050 Amborella trichopoda HOM05D001880 ORTHO05D004730 1.1e-08 64.3 47 59.6
MELO3C011157.2 Cucumis melo HOM05D001880 ORTHO05D004730 1.1e-08 64.3 47 61.7
Lj1g0005918 Lotus japonicus HOM05D001880 ORTHO05D004730 1.1e-08 64.3 47 59.6
Lalb_Chr23g0269481 Lupinus albus HOM05D001880 ORTHO05D004730 1.1e-08 64.3 47 59.6
TWI32G0570 Tripterygium wilfordii HOM05D001880 ORTHO05D004730 1.1e-08 64.3 47 61.7
vmacro11077 Vaccinium macrocarpon HOM05D001880 ORTHO05D004730 1.1e-08 64.3 47 63.8
DCAR_003047 Daucus carota HOM05D001880 ORTHO05D004730 1.4e-08 63.9 47 61.7
COL.COLO4_30423 Corchorus olitorius HOM05D001880 ORTHO05D004730 1.9e-08 63.5 47 59.6
Gorai.002G178100 Gossypium raimondii HOM05D001880 ORTHO05D004730 1.9e-08 63.5 50 58.0
Manes.16G069051 Manihot esculenta HOM05D001880 ORTHO05D004730 1.9e-08 63.5 47 61.7
Prupe.1G452100 Prunus persica HOM05D001880 ORTHO05D004730 1.9e-08 63.5 47 59.6
Sed0005261 Sechium edule HOM05D001880 ORTHO05D004730 1.9e-08 63.5 47 63.8
Sed0010239 Sechium edule HOM05D001880 ORTHO05D004730 1.9e-08 63.5 47 63.8
Glyma.04G080500 Glycine max HOM05D001880 ORTHO05D004730 2.4e-08 63.2 47 59.6
Gorai.009G050900 Gossypium raimondii HOM05D001880 ORTHO05D004730 2.4e-08 63.2 47 59.6
TAR383G0573 Trochodendron aralioides HOM05D001880 ORTHO05D004730 2.4e-08 63.2 47 57.4
Eucgr.C01584 Eucalyptus grandis HOM05D001880 ORTHO05D004730 3.2e-08 62.8 47 59.6
MBI01_g07170_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 3.2e-08 62.8 47 57.4
Rhsim02G0181700 Rhododendron simsii HOM05D001880 ORTHO05D004730 3.2e-08 62.8 47 61.7
Thecc.09G040300 Theobroma cacao HOM05D001880 ORTHO05D004730 3.2e-08 62.8 45 64.4
FvH4_2g36050 Fragaria vesca HOM05D001880 ORTHO05D004730 4.1e-08 62.4 47 57.4
FAN15G1328 Fragaria x ananassa HOM05D001880 ORTHO05D004730 4.1e-08 62.4 47 57.4
FAN27G3372 Fragaria x ananassa HOM05D001880 ORTHO05D004730 4.1e-08 62.4 47 57.4
Glyma.17G190500 Glycine max HOM05D001880 ORTHO05D004730 4.1e-08 62.4 47 59.6
Gohir.D01G144201 Gossypium hirsutum HOM05D001880 ORTHO05D004730 4.1e-08 62.4 47 59.6
Hma1.2p1_0140F.1_g063490 Hydrangea macrophylla HOM05D001880 ORTHO05D004730 4.1e-08 62.4 47 57.4
Manes.04G129200 Manihot esculenta HOM05D001880 ORTHO05D004730 4.1e-08 62.4 47 57.4
Phvul.009G106600 Phaseolus vulgaris HOM05D001880 ORTHO05D004730 4.1e-08 62.4 47 59.6
RcHm_v2.0_Chr6g0305801 Rosa chinensis HOM05D001880 ORTHO05D004730 4.1e-08 62.4 47 57.4
Actinidia31224 Actinidia chinensis HOM05D001880 ORTHO05D004730 5.4e-08 62.0 47 57.4
arahy.Tifrunner.gnm1.ann1.I11X1M Arachis hypogaea HOM05D001880 ORTHO05D004730 5.4e-08 62.0 47 57.4
arahy.Tifrunner.gnm1.ann1.KUD1W7 Arachis hypogaea HOM05D001880 ORTHO05D004730 5.4e-08 62.0 47 57.4
CSS0018831 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D004730 5.4e-08 62.0 47 59.6
Dinv14229 Davidia involucrata HOM05D001880 ORTHO05D004730 5.4e-08 62.0 47 57.4
Dinv30257 Davidia involucrata HOM05D001880 ORTHO05D004730 5.4e-08 62.0 47 55.3
Gohir.D05G049600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 5.4e-08 62.0 47 57.4
SEGI_31507 Sequoiadendron giganteum HOM05D001880 ORTHO05D004730 5.4e-08 62.0 47 59.6
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 5.4e-08 62.0 47 59.6
Duzib168G0571 Durio zibethinus HOM05D001880 ORTHO05D004730 7.0e-08 61.6 47 59.6
Lj8C597T6 Lonicera japonica HOM05D001880 ORTHO05D004730 7.0e-08 61.6 71 43.7
Lj8C602G7 Lonicera japonica HOM05D001880 ORTHO05D004730 7.0e-08 61.6 71 43.7
MBI04_g19165_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D004730 7.0e-08 61.6 47 59.6
Nn5g30497 Nelumbo nucifera HOM05D001880 ORTHO05D004730 7.0e-08 61.6 47 55.3
PGR031G0301 Punica granatum HOM05D001880 ORTHO05D004730 7.0e-08 61.6 47 55.3
CANSAT56G0393 Cannabis sativa HOM05D001880 ORTHO05D004730 9.2e-08 61.2 47 57.4
CDE05G2503 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 9.2e-08 61.2 47 53.2
ClCG08G012380 Citrullus lanatus HOM05D001880 ORTHO05D004730 9.2e-08 61.2 47 61.7
Cc08_g09020 Coffea canephora HOM05D001880 ORTHO05D004730 9.2e-08 61.2 45 60.0
Psat6g035680 Pisum sativum HOM05D001880 ORTHO05D004730 9.2e-08 61.2 47 57.4
Sc24g0001330 Simmondsia chinensis HOM05D001880 ORTHO05D004730 9.2e-08 61.2 47 59.6
CDE05G1114 Ceratophyllum demersum HOM05D001880 ORTHO05D004730 1.2e-07 60.8 47 53.2
HPP92_013605 Vanilla planifolia HOM05D001880 ORTHO05D004730 1.2e-07 60.8 47 59.6
Lsat_1_v5_gn_5_33160 Lactuca sativa HOM05D001880 ORTHO05D004730 1.6e-07 60.5 47 59.6
Medtr1g026890 Medicago truncatula HOM05D001880 ORTHO05D004730 1.6e-07 60.5 47 57.4
Potri.018G037900 Populus trichocarpa HOM05D001880 ORTHO05D004730 1.6e-07 60.5 47 55.3
AL2G41680 Arabidopsis lyrata HOM05D001880 ORTHO05D004730 2.0e-07 60.1 47 57.4
CANSAT25G1999 Cannabis sativa HOM05D001880 ORTHO05D004730 2.0e-07 60.1 47 57.4
Gohir.A05G048100 Gossypium hirsutum HOM05D001880 ORTHO05D004730 2.0e-07 60.1 47 57.4
Potri.006G241800 Populus trichocarpa HOM05D001880 ORTHO05D004730 2.0e-07 60.1 47 55.3
SalBow4G1753 Salvia bowleyana HOM05D001880 ORTHO05D004730 2.0e-07 60.1 71 43.7
Sp5g35890 Schrenkiella parvula HOM05D001880 ORTHO05D004730 2.0e-07 60.1 47 55.3
CARHR074610 Cardamine hirsuta HOM05D001880 ORTHO05D004730 2.7e-07 59.7 47 55.3
DCAR_007706 Daucus carota HOM05D001880 ORTHO05D004730 2.7e-07 59.7 47 55.3
Duzib150G1399 Durio zibethinus HOM05D001880 ORTHO05D004730 2.7e-07 59.7 47 55.3
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 2.7e-07 59.7 47 57.4
Aa31LG4G170 Aethionema arabicum HOM05D001880 ORTHO05D004730 3.5e-07 59.3 47 55.3
Thhalv10018639m.g Eutrema salsugineum HOM05D001880 ORTHO05D004730 3.5e-07 59.3 47 53.2
Gohir.D10G119600 Gossypium hirsutum HOM05D001880 ORTHO05D004730 3.5e-07 59.3 47 55.3
Gorai.011G131400 Gossypium raimondii HOM05D001880 ORTHO05D004730 3.5e-07 59.3 47 55.3
PSO210G2288 Papaver somniferum HOM05D001880 ORTHO05D004730 4.6e-07 58.9 47 55.3
Ca_12729_v3 Cicer arietinum L. HOM05D001880 ORTHO05D004730 6.0e-07 58.5 47 53.2
SHI18622 Sapria himalayana HOM05D001880 ORTHO05D004730 6.0e-07 58.5 47 53.2
Zm00001eb425750 Zea mays HOM05D001880 ORTHO05D004730 6.0e-07 58.5 47 57.4
AT1G79880 Arabidopsis thaliana HOM05D001880 ORTHO05D004730 7.8e-07 58.2 47 55.3
Glyma.06G082200 Glycine max HOM05D001880 ORTHO05D004730 7.8e-07 58.2 47 55.3
TPR.G20025 Trifolium pratense HOM05D001880 ORTHO05D004730 7.8e-07 58.2 47 55.3
CiPaw.08G023900 Carya illinoinensis HOM05D001880 ORTHO05D004730 1.0e-06 57.8 71 39.4
Os02g0610400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D004730 1.0e-06 57.8 47 53.2
Hund03438 Selenicereus undatus HOM05D001880 ORTHO05D004730 1.0e-06 57.8 47 57.4
Ah.16g105290 Amaranthus hybridus HOM05D001880 ORTHO05D004730 1.3e-06 57.4 47 55.3
AUR62009326 Chenopodium quinoa HOM05D001880 ORTHO05D004730 1.3e-06 57.4 47 55.3
AUR62023013 Chenopodium quinoa HOM05D001880 ORTHO05D004730 1.3e-06 57.4 47 55.3
PSO210G1470 Papaver somniferum HOM05D001880 ORTHO05D004730 1.3e-06 57.4 47 53.2
Sabra06G0189200 Salix brachista HOM05D001880 ORTHO05D004730 1.3e-06 57.4 47 53.2
BcaC08g45275 Brassica carinata HOM05D001880 ORTHO05D004730 1.7e-06 57.0 45 55.6
BcaNung07152 Brassica carinata HOM05D001880 ORTHO05D004730 1.7e-06 57.0 45 55.6
A07p26390 Brassica napus HOM05D001880 ORTHO05D004730 1.7e-06 57.0 45 53.3
C06p28780 Brassica napus HOM05D001880 ORTHO05D004730 1.7e-06 57.0 45 55.6
BolC6t38048H Brassica oleracea HOM05D001880 ORTHO05D004730 1.7e-06 57.0 45 55.6
BraA07t30283Z Brassica rapa HOM05D001880 ORTHO05D004730 1.7e-06 57.0 45 53.3
Haze_21861 Corylus avellana HOM05D001880 ORTHO05D004730 1.7e-06 57.0 47 51.1
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 5.0e-06 55.5 47 51.1
QL12p026586 Quercus lobata HOM05D001880 ORTHO05D004730 5.0e-06 55.5 47 48.9
Gohir.D07G027300 Gossypium hirsutum HOM05D001880 ORTHO05D004730 6.6e-06 55.1 47 51.1
Gorai.001G028400 Gossypium raimondii HOM05D001880 ORTHO05D004730 6.6e-06 55.1 47 51.1


User provided reference genes

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