Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 1.8e-112 409.5 229 100.0
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 6.9e-93 344.4 366 62.3
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 2.8e-70 269.2 361 48.5
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 3.7e-70 268.9 362 48.1
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 3.7e-70 268.9 362 48.1
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 1.7e-67 260.0 365 46.0
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 2.2e-67 259.6 367 48.2
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 2.9e-67 259.2 355 49.0
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 8.0e-65 251.1 369 45.5
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 4.2e-58 228.8 363 44.6
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 2.1e-57 226.5 363 43.5
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 8.0e-57 224.6 355 44.2
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 1.0e-56 224.2 366 42.3
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 1.7e-51 206.8 288 46.9
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 2.5e-34 149.8 370 36.2
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 1.3e-30 137.5 378 33.1
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 9.2e-29 131.3 339 33.9
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 8.6e-27 124.8 369 31.7
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 1.9e-26 123.6 374 31.3
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 2.5e-26 123.2 374 31.3
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 2.3e-24 116.7 368 29.6
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 6.8e-24 115.2 355 28.7
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 6.8e-24 115.2 368 33.2
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 2.0e-23 113.6 364 31.6
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 2.6e-23 113.2 364 31.9
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 4.4e-23 112.5 63 87.3
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 4.4e-23 112.5 360 29.4
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 4.4e-23 112.5 65 83.1
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 7.6e-23 111.7 69 76.8
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 1.3e-22 110.9 65 81.5
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 1.7e-22 110.5 63 85.7
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 1.7e-22 110.5 65 78.5
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.7e-22 110.5 63 85.7
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 2.2e-22 110.2 212 34.9
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 2.9e-22 109.8 65 80.0
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 2.9e-22 109.8 377 30.2
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 2.9e-22 109.8 371 33.2
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 2.9e-22 109.8 377 29.7
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 2.9e-22 109.8 65 78.5
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 2.9e-22 109.8 65 80.0
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 4.9e-22 109.0 372 30.9
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 4.9e-22 109.0 372 28.2
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 6.4e-22 108.6 65 80.0
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 6.4e-22 108.6 63 82.5
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 6.4e-22 108.6 65 80.0
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 6.4e-22 108.6 377 28.4
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 6.4e-22 108.6 69 73.9
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 8.3e-22 108.2 65 78.5
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 8.3e-22 108.2 65 78.5
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 8.3e-22 108.2 65 78.5
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 1.1e-21 107.8 364 28.0
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 1.1e-21 107.8 63 82.5
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.1e-21 107.8 65 76.9
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 1.1e-21 107.8 65 78.5
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 1.1e-21 107.8 368 29.9
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.4e-21 107.5 372 29.3
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.9e-21 107.1 376 28.5
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 1.9e-21 107.1 65 76.9
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 1.9e-21 107.1 282 31.9
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 1.9e-21 107.1 69 73.9
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 1.9e-21 107.1 65 78.5
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 1.9e-21 107.1 66 77.3
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 1.9e-21 107.1 65 76.9
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 2.4e-21 106.7 371 29.6
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.4e-21 106.7 69 75.4
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.4e-21 106.7 69 75.4
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 3.2e-21 106.3 112 52.7
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 3.2e-21 106.3 65 78.5
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 3.2e-21 106.3 373 29.5
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 3.2e-21 106.3 65 76.9
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 3.2e-21 106.3 65 75.4
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 3.2e-21 106.3 112 52.7
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 4.1e-21 105.9 115 53.0
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 4.1e-21 105.9 65 78.5
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 4.1e-21 105.9 70 72.9
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 4.1e-21 105.9 65 80.0
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 5.4e-21 105.5 65 76.9
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 5.4e-21 105.5 65 76.9
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 5.4e-21 105.5 69 72.5
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 7.1e-21 105.1 333 28.5
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 7.1e-21 105.1 70 72.9
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 7.1e-21 105.1 167 41.9
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 7.1e-21 105.1 65 75.4
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 7.1e-21 105.1 65 75.4
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 7.1e-21 105.1 65 75.4
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 9.2e-21 104.8 65 76.9
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 9.2e-21 104.8 63 79.4
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 9.2e-21 104.8 69 72.5
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 9.2e-21 104.8 63 79.4
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 9.2e-21 104.8 63 77.8
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 1.2e-20 104.4 65 75.4
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 1.2e-20 104.4 112 52.7
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 1.2e-20 104.4 65 75.4
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 1.6e-20 104.0 112 50.9
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 1.6e-20 104.0 70 70.0
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 1.6e-20 104.0 65 76.9
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 2.7e-20 103.2 112 51.8
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.7e-20 103.2 65 75.4
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 2.7e-20 103.2 65 75.4
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 2.7e-20 103.2 63 77.8
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 2.7e-20 103.2 65 76.9
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 3.5e-20 102.8 63 79.4
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 3.5e-20 102.8 65 75.4
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 3.5e-20 102.8 65 75.4
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 3.5e-20 102.8 72 73.6
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 3.5e-20 102.8 65 75.4
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 4.6e-20 102.4 112 50.9
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 4.6e-20 102.4 65 76.9
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 4.6e-20 102.4 65 73.8
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 6.0e-20 102.1 72 73.6
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 6.0e-20 102.1 63 76.2
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 6.0e-20 102.1 65 73.8
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 6.0e-20 102.1 366 29.2
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 7.8e-20 101.7 70 70.0
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 7.8e-20 101.7 376 28.5
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 1.0e-19 101.3 65 75.4
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 1.0e-19 101.3 65 75.4
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 1.0e-19 101.3 65 75.4
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 1.3e-19 100.9 67 73.1
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 2.3e-19 100.1 65 76.9
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 3.0e-19 99.8 65 70.8
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 3.0e-19 99.8 63 74.6
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 3.9e-19 99.4 137 45.3
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 3.9e-19 99.4 65 73.8
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.1e-18 97.8 63 71.4
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 1.5e-18 97.4 65 70.8
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 3.3e-18 96.3 65 67.7
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 3.3e-18 96.3 65 70.8
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 7.3e-18 95.1 70 67.1
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 7.3e-18 95.1 65 70.8
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 7.3e-18 95.1 65 70.8
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 9.6e-18 94.7 68 63.2
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.1e-17 93.6 64 71.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 2.8e-17 93.2 63 66.7
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 3.6e-17 92.8 57 86.0
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 3.6e-17 92.8 76 65.8
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 6.2e-17 92.0 76 69.7
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 1.4e-16 90.9 64 62.5
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 1.8e-16 90.5 343 28.3
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 1.8e-16 90.5 86 57.0
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 2.4e-16 90.1 65 66.2
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 3.1e-16 89.7 65 66.2
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 3.1e-16 89.7 63 63.5
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 6.8e-16 88.6 203 36.0
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 2.6e-15 86.7 64 62.5
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 4.4e-15 85.9 64 57.8
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 5.8e-15 85.5 351 26.5
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.9e-13 80.5 62 62.9
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 7.1e-13 78.6 139 37.4
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 2.1e-12 77.0 347 25.6
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 4.6e-12 75.9 345 24.6
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 2.3e-11 73.6 53 66.0
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.1e-10 71.2 48 72.9
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 5.6e-10 68.9 43 69.8
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 7.3e-10 68.6 62 50.0
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 1.2e-07 61.2 45 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 1.5e-07 60.8 73 50.7


User provided reference genes

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