Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g27450 Brassica carinata HOM05D005509 ORTHO05D006411 4.3e-71 271.2 132 100.0
BcaNung05648 Brassica carinata HOM05D005509 ORTHO05D006411 3.9e-40 168.3 86 95.3
BcaC02g10727 Brassica carinata HOM05D005509 ORTHO05D006411 5.9e-20 101.3 64 76.6
BcaB01g00105 Brassica carinata HOM05D005509 ORTHO05D006411 6.7e-16 87.8 53 84.9
BcaC07g39857 Brassica carinata HOM05D005509 ORTHO05D006411 6.7e-16 87.8 53 84.9
A09p48320 Brassica napus HOM05D005509 ORTHO05D006411 6.7e-16 87.8 53 84.9
BraA09t40284Z Brassica rapa HOM05D005509 ORTHO05D006411 6.7e-16 87.8 53 84.9
CARHR165400 Cardamine hirsuta HOM05D005509 ORTHO05D006411 8.8e-16 87.4 53 84.9
Thhalv10010742m.g Eutrema salsugineum HOM05D005509 ORTHO05D006411 8.8e-16 87.4 53 84.9
BcaB02g08425 Brassica carinata HOM05D005509 ORTHO05D006411 2.0e-15 86.3 53 83.0
BolC8t50677H Brassica oleracea HOM05D005509 ORTHO05D006411 2.0e-15 86.3 53 83.0
AL5G36540 Arabidopsis lyrata HOM05D005509 ORTHO05D006411 2.6e-15 85.9 53 83.0
C08p30610 Brassica napus HOM05D005509 ORTHO05D006411 2.6e-15 85.9 53 83.0
Carub.0005s2210 Capsella rubella HOM05D005509 ORTHO05D006411 2.6e-15 85.9 53 83.0
Sp5g07080 Schrenkiella parvula HOM05D005509 ORTHO05D006411 4.4e-15 85.1 51 84.3
AT3G55390 Arabidopsis thaliana HOM05D005509 ORTHO05D006411 1.3e-14 83.6 53 81.1
THA.LOC104810024 Tarenaya hassleriana HOM05D005509 ORTHO05D006411 1.7e-14 83.2 51 82.4
Aa31LG10G10410 Aethionema arabicum HOM05D005509 ORTHO05D006411 6.3e-14 81.3 53 77.4
GSVIVG01016570001 Vitis vinifera HOM05D005509 ORTHO05D006411 6.3e-14 81.3 58 69.0
CiPaw.01G284800 Carya illinoinensis HOM05D005509 ORTHO05D006411 1.4e-13 80.1 60 65.0
Haze_17044 Corylus avellana HOM05D005509 ORTHO05D006411 3.1e-13 79.0 54 68.5
Manes.10G032200 Manihot esculenta HOM05D005509 ORTHO05D006411 2.0e-12 76.3 68 58.8
Nn2g10410 Nelumbo nucifera HOM05D005509 ORTHO05D006411 2.0e-12 76.3 69 62.3
Cfa001498 Carpinus fangiana HOM05D005509 ORTHO05D006411 2.6e-12 75.9 54 66.7
Atru.chr12.494 Acer truncatum HOM05D005509 ORTHO05D006411 4.5e-12 75.1 61 63.9
Gohir.A10G216300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 4.5e-12 75.1 68 55.9
Gohir.D10G225300 Gossypium hirsutum HOM05D005509 ORTHO05D006411 4.5e-12 75.1 68 55.9
Gorai.011G256300 Gossypium raimondii HOM05D005509 ORTHO05D006411 4.5e-12 75.1 68 55.9
Ciclev10032822m.g Citrus clementina HOM05D005509 ORTHO05D006411 7.7e-12 74.3 54 66.7
COL.COLO4_14983 Corchorus olitorius HOM05D005509 ORTHO05D006411 7.7e-12 74.3 54 66.7
Thecc.10G045900 Theobroma cacao HOM05D005509 ORTHO05D006411 1.0e-11 73.9 54 66.7
LjContig00357g0008800 Lotus japonicus HOM05D005509 ORTHO05D006411 1.3e-11 73.6 51 70.6
ClCG07G003330 Citrullus lanatus HOM05D005509 ORTHO05D006411 1.7e-11 73.2 62 61.3
CsaV3_5G008080 Cucumis sativus L. HOM05D005509 ORTHO05D006411 1.7e-11 73.2 62 61.3
Lj8A85G36 Lonicera japonica HOM05D005509 ORTHO05D006411 2.2e-11 72.8 51 70.6
Lj5g0000580 Lotus japonicus HOM05D005509 ORTHO05D006411 2.2e-11 72.8 51 70.6
Duzib114G0718 Durio zibethinus HOM05D005509 ORTHO05D006411 2.9e-11 72.4 54 64.8
Duzib106G1457 Durio zibethinus HOM05D005509 ORTHO05D006411 3.8e-11 72.0 54 64.8
Dinv25997 Davidia involucrata HOM05D005509 ORTHO05D006411 8.5e-11 70.9 91 46.2
C04p36990 Brassica napus HOM05D005509 ORTHO05D006411 1.1e-10 70.5 52 69.2
Glyma.20G099700 Glycine max HOM05D005509 ORTHO05D006411 1.1e-10 70.5 51 68.6
Phvul.007G011900 Phaseolus vulgaris HOM05D005509 ORTHO05D006411 1.1e-10 70.5 51 68.6
Potri.008G053500 Populus trichocarpa HOM05D005509 ORTHO05D006411 1.1e-10 70.5 54 66.7
Potri.010G207000 Populus trichocarpa HOM05D005509 ORTHO05D006411 1.1e-10 70.5 54 64.8
Sabra10G0159800 Salix brachista HOM05D005509 ORTHO05D006411 1.1e-10 70.5 53 66.0
arahy.Tifrunner.gnm1.ann1.LMNG4E Arachis hypogaea HOM05D005509 ORTHO05D006411 2.5e-10 69.3 51 68.6
arahy.Tifrunner.gnm1.ann1.QH4526 Arachis hypogaea HOM05D005509 ORTHO05D006411 2.5e-10 69.3 51 68.6
Hma1.2p1_0533F.1_g173520 Hydrangea macrophylla HOM05D005509 ORTHO05D006411 4.2e-10 68.6 65 56.9
TPR.G13986 Trifolium pratense HOM05D005509 ORTHO05D006411 4.2e-10 68.6 51 68.6
Ca_11287_v3 Cicer arietinum L. HOM05D005509 ORTHO05D006411 5.5e-10 68.2 51 66.7
Sed0018254 Sechium edule HOM05D005509 ORTHO05D006411 5.5e-10 68.2 63 57.1
VMungo0720G2814 Vigna mungo HOM05D005509 ORTHO05D006411 5.5e-10 68.2 51 64.7
Actinidia13870 Actinidia chinensis HOM05D005509 ORTHO05D006411 7.2e-10 67.8 58 55.2
CANSAT56G0048 Cannabis sativa HOM05D005509 ORTHO05D006411 7.2e-10 67.8 54 64.8
CANSAT56G3940 Cannabis sativa HOM05D005509 ORTHO05D006411 7.2e-10 67.8 79 51.9
C04p27060 Brassica napus HOM05D005509 ORTHO05D006411 9.4e-10 67.4 46 73.9
BolC4t24086H Brassica oleracea HOM05D005509 ORTHO05D006411 9.4e-10 67.4 46 73.9
Lalb_Chr21g0307401 Lupinus albus HOM05D005509 ORTHO05D006411 1.2e-09 67.0 51 64.7
TAR369G0916 Trochodendron aralioides HOM05D005509 ORTHO05D006411 1.2e-09 67.0 54 59.3
TAR369G1093 Trochodendron aralioides HOM05D005509 ORTHO05D006411 1.2e-09 67.0 54 59.3
Psat6g235920 Pisum sativum HOM05D005509 ORTHO05D006411 1.6e-09 66.6 51 66.7
PGR044G0205 Punica granatum HOM05D005509 ORTHO05D006411 1.6e-09 66.6 54 61.1
DCAR_015180 Daucus carota HOM05D005509 ORTHO05D006411 2.1e-09 66.2 51 64.7
Nn1g05020 Nelumbo nucifera HOM05D005509 ORTHO05D006411 2.1e-09 66.2 72 52.8
Eucgr.J00034 Eucalyptus grandis HOM05D005509 ORTHO05D006411 6.1e-09 64.7 54 57.4
Glyma.10G289200 Glycine max HOM05D005509 ORTHO05D006411 6.1e-09 64.7 51 64.7
Sabra08G0038700 Salix brachista HOM05D005509 ORTHO05D006411 1.0e-08 63.9 54 59.3
Hund20028 Selenicereus undatus HOM05D005509 ORTHO05D006411 1.0e-08 63.9 75 49.3
Cpa.g.sc1.389 Carica papaya HOM05D005509 ORTHO05D006411 1.4e-08 63.5 54 57.4
EL10Ac2g03407 Beta vulgaris HOM05D005509 ORTHO05D006411 2.3e-08 62.8 75 49.3
Medtr1g115285 Medicago truncatula HOM05D005509 ORTHO05D006411 2.3e-08 62.8 51 62.7
Peaxi162Scf00015g01412 Petunia axillaris HOM05D005509 ORTHO05D006411 2.3e-08 62.8 48 66.7
QL08p059131 Quercus lobata HOM05D005509 ORTHO05D006411 5.2e-08 61.6 53 60.4
Peaxi162Scf00760g00127 Petunia axillaris HOM05D005509 ORTHO05D006411 6.7e-08 61.2 58 56.9
Rhsim09G0165100 Rhododendron simsii HOM05D005509 ORTHO05D006411 8.8e-08 60.8 57 52.6
MELO3C023854.2 Cucumis melo HOM05D005509 ORTHO05D006411 1.2e-07 60.5 50 66.0
Cc02_g08060 Coffea canephora HOM05D005509 ORTHO05D006411 1.5e-07 60.1 51 58.8
Prupe.2G232700 Prunus persica HOM05D005509 ORTHO05D006411 1.5e-07 60.1 56 53.6
TAR633G1442 Trochodendron aralioides HOM05D005509 ORTHO05D006411 1.5e-07 60.1 59 57.6
TWI63G1706 Tripterygium wilfordii HOM05D005509 ORTHO05D006411 2.0e-07 59.7 78 50.0
Aqoxy2G02060 Aquilegia oxysepala HOM05D005509 ORTHO05D006411 2.6e-07 59.3 51 54.9
Oeu051004.1 Olea europaea HOM05D005509 ORTHO05D006411 2.6e-07 59.3 51 56.9
BcaB04g18041 Brassica carinata HOM05D005509 ORTHO05D006411 7.5e-07 57.8 31 87.1
Nitab4.5_0003969g0090 Nicotiana tabacum HOM05D005509 ORTHO05D006411 1.3e-06 57.0 60 53.3
Sopen04g005600 Solanum pennellii HOM05D005509 ORTHO05D006411 1.3e-06 57.0 59 54.2
PGSC0003DMG400027734 Solanum tuberosum HOM05D005509 ORTHO05D006411 1.3e-06 57.0 59 52.5
HanXRQChr14g0458211 Helianthus annuus HOM05D005509 ORTHO05D006411 2.8e-06 55.8 61 50.8
Nitab4.5_0005525g0100 Nicotiana tabacum HOM05D005509 ORTHO05D006411 3.7e-06 55.5 60 51.7
CSS0029595 Camellia sinensis var. sinensis HOM05D005509 ORTHO05D006411 4.8e-06 55.1 52 53.8
ECA233G3830 Erigeron canadensis HOM05D005509 ORTHO05D006411 6.3e-06 54.7 66 50.0
Nitab4.5_0014743g0010 Nicotiana tabacum HOM05D005509 ORTHO05D006411 8.2e-06 54.3 32 75.0


User provided reference genes

Program Settings