Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26954 Brassica carinata HOM05D003243 ORTHO05D003717 1.0e-74 283.9 214 100.0
BcaB02g07094 Brassica carinata HOM05D003243 ORTHO05D003717 3.0e-42 176.0 189 86.2
AL1G34520 Arabidopsis lyrata HOM05D003243 ORTHO05D003717 1.2e-35 154.1 258 64.0
A07p42630 Brassica napus HOM05D003243 ORTHO05D003717 3.6e-35 152.5 258 65.1
Thhalv10018746m.g Eutrema salsugineum HOM05D003243 ORTHO05D003717 4.7e-35 152.1 260 65.4
A07p28110 Brassica napus HOM05D003243 ORTHO05D003717 6.2e-35 151.8 258 64.3
BolC6t38282H Brassica oleracea HOM05D003243 ORTHO05D003717 6.2e-35 151.8 258 64.7
Sp5g32170 Schrenkiella parvula HOM05D003243 ORTHO05D003717 6.2e-35 151.8 260 65.0
BolC6t40144H Brassica oleracea HOM05D003243 ORTHO05D003717 1.4e-34 150.6 258 64.7
BraA07t30455Z Brassica rapa HOM05D003243 ORTHO05D003717 1.8e-34 150.2 258 64.3
BraA07t31785Z Brassica rapa HOM05D003243 ORTHO05D003717 3.1e-34 149.4 258 64.7
C06p31540 Brassica napus HOM05D003243 ORTHO05D003717 4.0e-34 149.1 258 64.3
AT1G77000 Arabidopsis thaliana HOM05D003243 ORTHO05D003717 1.5e-33 147.1 258 63.2
AL2G37170 Arabidopsis lyrata HOM05D003243 ORTHO05D003717 4.4e-33 145.6 261 63.2
C06p51220 Brassica napus HOM05D003243 ORTHO05D003717 9.8e-33 144.4 258 64.0
Carub.0002s2392 Capsella rubella HOM05D003243 ORTHO05D003717 2.9e-32 142.9 258 62.8
BcaNung04680 Brassica carinata HOM05D003243 ORTHO05D003717 1.1e-31 141.0 258 64.0
Sp1g18960 Schrenkiella parvula HOM05D003243 ORTHO05D003717 2.4e-31 139.8 258 61.2
AT1G21410 Arabidopsis thaliana HOM05D003243 ORTHO05D003717 1.6e-30 137.1 258 61.2
Carub.0001s2083 Capsella rubella HOM05D003243 ORTHO05D003717 3.5e-30 136.0 258 61.6
CARHR070540 Cardamine hirsuta HOM05D003243 ORTHO05D003717 2.3e-29 133.3 259 61.8
Thhalv10008012m.g Eutrema salsugineum HOM05D003243 ORTHO05D003717 1.5e-28 130.6 258 60.1
CARHR021800 Cardamine hirsuta HOM05D003243 ORTHO05D003717 3.3e-28 129.4 258 59.7
Aa31LG7G5480 Aethionema arabicum HOM05D003243 ORTHO05D003717 7.3e-28 128.3 258 59.7
Potri.002G074700 Populus trichocarpa HOM05D003243 ORTHO05D003717 1.8e-26 123.6 258 53.5
BcaNung04683 Brassica carinata HOM05D003243 ORTHO05D003717 5.2e-26 122.1 102 83.3
THA.LOC104804863 Tarenaya hassleriana HOM05D003243 ORTHO05D003717 1.2e-25 120.9 126 84.1
TWI34G0021 Tripterygium wilfordii HOM05D003243 ORTHO05D003717 5.8e-25 118.6 258 55.8
Ciclev10001527m.g Citrus clementina HOM05D003243 ORTHO05D003717 9.8e-25 117.9 258 57.8
Sabra05G0141900 Salix brachista HOM05D003243 ORTHO05D003717 9.8e-25 117.9 258 56.6
Potri.005G185700 Populus trichocarpa HOM05D003243 ORTHO05D003717 2.2e-24 116.7 258 55.4
Sabra02G0058200 Salix brachista HOM05D003243 ORTHO05D003717 2.2e-24 116.7 258 52.3
BraA08t34829Z Brassica rapa HOM05D003243 ORTHO05D003717 4.9e-24 115.5 260 60.4
Gohir.A05G240800 Gossypium hirsutum HOM05D003243 ORTHO05D003717 6.4e-24 115.2 258 57.0
Duzib116G0834 Durio zibethinus HOM05D003243 ORTHO05D003717 8.3e-24 114.8 258 57.8
BcaC07g39100 Brassica carinata HOM05D003243 ORTHO05D003717 1.1e-23 114.4 260 60.0
COL.COLO4_35492 Corchorus olitorius HOM05D003243 ORTHO05D003717 1.4e-23 114.0 258 57.4
Thecc.08G138500 Theobroma cacao HOM05D003243 ORTHO05D003717 1.9e-23 113.6 258 57.4
C08p20820 Brassica napus HOM05D003243 ORTHO05D003717 2.4e-23 113.2 260 59.6
BolC8t49722H Brassica oleracea HOM05D003243 ORTHO05D003717 2.4e-23 113.2 260 59.6
Gohir.D05G242000 Gossypium hirsutum HOM05D003243 ORTHO05D003717 3.2e-23 112.8 258 56.6
Gorai.009G251400 Gossypium raimondii HOM05D003243 ORTHO05D003717 3.2e-23 112.8 258 56.6
Nitab4.5_0003622g0030 Nicotiana tabacum HOM05D003243 ORTHO05D003717 5.4e-23 112.1 258 55.4
Manes.02G172600 Manihot esculenta HOM05D003243 ORTHO05D003717 7.1e-23 111.7 258 55.4
GSVIVG01009981001 Vitis vinifera HOM05D003243 ORTHO05D003717 7.1e-23 111.7 258 57.4
PGSC0003DMG400024857 Solanum tuberosum HOM05D003243 ORTHO05D003717 2.7e-22 109.8 258 55.4
Nitab4.5_0000174g0050 Nicotiana tabacum HOM05D003243 ORTHO05D003717 3.5e-22 109.4 258 55.0
Lj1g0004319 Lotus japonicus HOM05D003243 ORTHO05D003717 6.0e-22 108.6 258 38.0
BcaC08g47203 Brassica carinata HOM05D003243 ORTHO05D003717 1.0e-21 107.8 243 50.6
CSS0014299 Camellia sinensis var. sinensis HOM05D003243 ORTHO05D003717 1.0e-21 107.8 258 57.0
Gohir.A02G068700 Gossypium hirsutum HOM05D003243 ORTHO05D003717 1.0e-21 107.8 258 55.4
Eucgr.F02761 Eucalyptus grandis HOM05D003243 ORTHO05D003717 1.3e-21 107.5 262 53.4
Gohir.A02G109500 Gossypium hirsutum HOM05D003243 ORTHO05D003717 1.7e-21 107.1 258 56.2
BcaB03g12816 Brassica carinata HOM05D003243 ORTHO05D003717 2.3e-21 106.7 259 57.9
Peaxi162Scf00066g01516 Petunia axillaris HOM05D003243 ORTHO05D003717 3.0e-21 106.3 258 54.7
Atru.chr13.1648 Acer truncatum HOM05D003243 ORTHO05D003717 3.9e-21 105.9 258 56.2
Aa31LG4G7070 Aethionema arabicum HOM05D003243 ORTHO05D003717 6.6e-21 105.1 258 58.1
FAN27G0949 Fragaria x ananassa HOM05D003243 ORTHO05D003717 6.6e-21 105.1 258 57.0
Gohir.D03G062300 Gossypium hirsutum HOM05D003243 ORTHO05D003717 6.6e-21 105.1 258 55.8
A08p28960 Brassica napus HOM05D003243 ORTHO05D003717 1.1e-20 104.4 260 58.5
Duzib093G1881 Durio zibethinus HOM05D003243 ORTHO05D003717 1.1e-20 104.4 258 39.5
Gorai.006G096600 Gossypium raimondii HOM05D003243 ORTHO05D003717 1.1e-20 104.4 258 54.3
THA.LOC104812061 Tarenaya hassleriana HOM05D003243 ORTHO05D003717 1.9e-20 103.6 262 57.3
Solyc04g063380.3 Solanum lycopersicum HOM05D003243 ORTHO05D003717 4.3e-20 102.4 258 54.3
Sopen04g026300 Solanum pennellii HOM05D003243 ORTHO05D003717 4.3e-20 102.4 258 54.3
Gohir.D02G075200 Gossypium hirsutum HOM05D003243 ORTHO05D003717 5.6e-20 102.1 258 54.7
Gorai.005G084600 Gossypium raimondii HOM05D003243 ORTHO05D003717 5.6e-20 102.1 258 54.7
Rhsim11G0075000 Rhododendron simsii HOM05D003243 ORTHO05D003717 1.2e-19 100.9 260 54.6
CAN.G46.5 Capsicum annuum HOM05D003243 ORTHO05D003717 1.6e-19 100.5 258 54.3
Gorai.013G107300 Gossypium raimondii HOM05D003243 ORTHO05D003717 2.8e-19 99.8 258 55.0
CAN.G402.3 Capsicum annuum HOM05D003243 ORTHO05D003717 1.4e-18 97.4 118 52.5
Nn1g06283 Nelumbo nucifera HOM05D003243 ORTHO05D003717 3.1e-18 96.3 258 53.9
MSTRG.25343 Avicennia marina HOM05D003243 ORTHO05D003717 4.0e-18 95.9 258 53.9
SalBow7G2939 Salvia bowleyana HOM05D003243 ORTHO05D003717 4.0e-18 95.9 252 54.8
Hma1.2p1_0107F.1_g051260 Hydrangea macrophylla HOM05D003243 ORTHO05D003717 5.2e-18 95.5 258 54.7
MSTRG.1390 Avicennia marina HOM05D003243 ORTHO05D003717 6.8e-18 95.1 258 54.3
Actinidia25629 Actinidia chinensis HOM05D003243 ORTHO05D003717 8.9e-18 94.7 258 52.7
Cpa.g.sc26.74 Carica papaya HOM05D003243 ORTHO05D003717 1.2e-17 94.4 262 50.4
BcaC01g01597 Brassica carinata HOM05D003243 ORTHO05D003717 2.0e-17 93.6 157 40.8
SalBow6G3961 Salvia bowleyana HOM05D003243 ORTHO05D003717 3.4e-17 92.8 258 53.9
Duzib041G0121 Durio zibethinus HOM05D003243 ORTHO05D003717 4.4e-17 92.4 241 49.4
CiPaw.15G024000 Carya illinoinensis HOM05D003243 ORTHO05D003717 2.2e-16 90.1 258 53.9
Cc10_g13230 Coffea canephora HOM05D003243 ORTHO05D003717 2.2e-16 90.1 255 54.9
THA.LOC104810056 Tarenaya hassleriana HOM05D003243 ORTHO05D003717 8.4e-16 88.2 110 81.8
Oeu001554.1 Olea europaea HOM05D003243 ORTHO05D003717 1.4e-15 87.4 258 51.9
Oeu045988.1 Olea europaea HOM05D003243 ORTHO05D003717 1.4e-15 87.4 190 64.2
Hund04717 Selenicereus undatus HOM05D003243 ORTHO05D003717 1.4e-15 87.4 254 52.4
SGA_v2.0_scaffold48G17925 Striga asiatica HOM05D003243 ORTHO05D003717 1.4e-15 87.4 259 51.0
Haze_17675 Corylus avellana HOM05D003243 ORTHO05D003717 5.4e-15 85.5 258 53.1
CANSAT21G2438 Cannabis sativa HOM05D003243 ORTHO05D003717 9.2e-15 84.7 259 54.4
Dinv41147 Davidia involucrata HOM05D003243 ORTHO05D003717 9.2e-15 84.7 227 58.1
HanXRQChr05g0160471 Helianthus annuus HOM05D003243 ORTHO05D003717 1.6e-14 84.0 258 52.3
PGR042G1914 Punica granatum HOM05D003243 ORTHO05D003717 1.6e-14 84.0 270 51.9
ATR0584G015 Amborella trichopoda HOM05D003243 ORTHO05D003717 2.1e-14 83.6 115 76.5
Cfa018393 Carpinus fangiana HOM05D003243 ORTHO05D003717 2.1e-14 83.6 258 52.7
ECA232G3205 Erigeron canadensis HOM05D003243 ORTHO05D003717 2.1e-14 83.6 116 75.0
DCAR_010277 Daucus carota HOM05D003243 ORTHO05D003717 2.7e-14 83.2 247 52.6
Hund17376 Selenicereus undatus HOM05D003243 ORTHO05D003717 2.7e-14 83.2 247 52.2
Lj7A357T26 Lonicera japonica HOM05D003243 ORTHO05D003717 4.6e-14 82.4 196 63.8
Oeu002390.1 Olea europaea HOM05D003243 ORTHO05D003717 4.6e-14 82.4 258 51.9
Sc15g0007480 Simmondsia chinensis HOM05D003243 ORTHO05D003717 6.0e-14 82.0 254 53.1
Gorai.009G163000 Gossypium raimondii HOM05D003243 ORTHO05D003717 7.8e-14 81.6 164 45.1
MD05G1010400 Malus domestica HOM05D003243 ORTHO05D003717 7.8e-14 81.6 259 53.7
Hma1.2p1_0642F.1_g194370 Hydrangea macrophylla HOM05D003243 ORTHO05D003717 1.3e-13 80.9 252 51.2
unitig_82.g27082 Utricularia gibba HOM05D003243 ORTHO05D003717 3.0e-13 79.7 110 75.5
Lsat_1_v5_gn_6_97240 Lactuca sativa HOM05D003243 ORTHO05D003717 3.9e-13 79.3 259 51.4
CDE04G2857 Ceratophyllum demersum HOM05D003243 ORTHO05D003717 5.1e-13 79.0 257 52.1
Prupe.8G012800 Prunus persica HOM05D003243 ORTHO05D003717 5.1e-13 79.0 259 53.3
TPR.G33350 Trifolium pratense HOM05D003243 ORTHO05D003717 5.1e-13 79.0 258 52.3
TAR628G1621 Trochodendron aralioides HOM05D003243 ORTHO05D003717 6.6e-13 78.6 256 50.8
vmacro00878 Vaccinium macrocarpon HOM05D003243 ORTHO05D003717 6.6e-13 78.6 260 52.3
FAN20G2537 Fragaria x ananassa HOM05D003243 ORTHO05D003717 8.6e-13 78.2 258 52.7
FAN15G3584 Fragaria x ananassa HOM05D003243 ORTHO05D003717 1.9e-12 77.0 258 52.3
TAR381G1399 Trochodendron aralioides HOM05D003243 ORTHO05D003717 3.3e-12 76.3 245 53.9
Aqoxy6G00333 Aquilegia oxysepala HOM05D003243 ORTHO05D003717 4.3e-12 75.9 258 50.8
Migut.C01093 Erythranthe guttata HOM05D003243 ORTHO05D003717 4.3e-12 75.9 260 51.5
DCAR_001093 Daucus carota HOM05D003243 ORTHO05D003717 7.3e-12 75.1 247 52.6
Medtr1g029500 Medicago truncatula HOM05D003243 ORTHO05D003717 7.3e-12 75.1 258 51.9
RcHm_v2.0_Chr6g0277841 Rosa chinensis HOM05D003243 ORTHO05D003717 7.3e-12 75.1 259 52.5
HanXRQChr04g0109701 Helianthus annuus HOM05D003243 ORTHO05D003717 1.6e-11 73.9 111 73.0
Glyma.06G120600 Glycine max HOM05D003243 ORTHO05D003717 2.1e-11 73.6 258 51.2
Gohir.D05G158266 Gossypium hirsutum HOM05D003243 ORTHO05D003717 2.1e-11 73.6 109 58.7
Psat6g039800 Pisum sativum HOM05D003243 ORTHO05D003717 2.8e-11 73.2 174 63.8
Ca_23406_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 4.7e-11 72.4 50 62.0
CsaV3_6G031140 Cucumis sativus L. HOM05D003243 ORTHO05D003717 6.2e-11 72.0 258 51.2
Psat5g082440 Pisum sativum HOM05D003243 ORTHO05D003717 1.1e-10 71.2 126 65.9
FvH4_2g15180 Fragaria vesca HOM05D003243 ORTHO05D003717 1.4e-10 70.9 254 51.6
FAN24G2686 Fragaria x ananassa HOM05D003243 ORTHO05D003717 1.4e-10 70.9 254 51.6
Glyma.04G242700 Glycine max HOM05D003243 ORTHO05D003717 1.4e-10 70.9 258 51.6
Nn5g28514 Nelumbo nucifera HOM05D003243 ORTHO05D003717 1.4e-10 70.9 258 50.4
HPP92_006892 Vanilla planifolia HOM05D003243 ORTHO05D003717 1.4e-10 70.9 112 73.2
Ca_12653_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 2.4e-10 70.1 258 50.0
Ca_12670_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 2.4e-10 70.1 258 50.0
Lalb_Chr11g0066321 Lupinus albus HOM05D003243 ORTHO05D003717 8.9e-10 68.2 259 51.7
Hund26760 Selenicereus undatus HOM05D003243 ORTHO05D003717 8.9e-10 68.2 254 50.4
ClCG08G006300 Citrullus lanatus HOM05D003243 ORTHO05D003717 2.0e-09 67.0 258 50.4
Lalb_Chr08g0240891 Lupinus albus HOM05D003243 ORTHO05D003717 2.0e-09 67.0 259 52.1
MD10G1009000 Malus domestica HOM05D003243 ORTHO05D003717 2.0e-09 67.0 147 49.7
Actinidia29502 Actinidia chinensis HOM05D003243 ORTHO05D003717 2.6e-09 66.6 199 50.3
Manes.18G085100 Manihot esculenta HOM05D003243 ORTHO05D003717 2.6e-09 66.6 258 50.4
HanXRQChr04g0109731 Helianthus annuus HOM05D003243 ORTHO05D003717 3.4e-09 66.2 144 58.3
Zm00001eb288390 Zea mays HOM05D003243 ORTHO05D003717 4.4e-09 65.9 105 72.4
arahy.Tifrunner.gnm1.ann1.H9I2X3 Arachis hypogaea HOM05D003243 ORTHO05D003717 5.8e-09 65.5 259 51.0
Lj1g0023277 Lotus japonicus HOM05D003243 ORTHO05D003717 5.8e-09 65.5 258 51.6
Medtr3g088895 Medicago truncatula HOM05D003243 ORTHO05D003717 5.8e-09 65.5 258 51.2
Os01g0881900 Oryza sativa ssp. japonica HOM05D003243 ORTHO05D003717 5.8e-09 65.5 107 72.0
arahy.Tifrunner.gnm1.ann1.QJLN12 Arachis hypogaea HOM05D003243 ORTHO05D003717 7.6e-09 65.1 260 50.8
PSO528G0160 Papaver somniferum HOM05D003243 ORTHO05D003717 7.6e-09 65.1 104 76.9
MELO3C008429.2 Cucumis melo HOM05D003243 ORTHO05D003717 9.9e-09 64.7 258 49.6
CiPaw.16G019300 Carya illinoinensis HOM05D003243 ORTHO05D003717 1.7e-08 63.9 258 50.8
Gorai.010G130600 Gossypium raimondii HOM05D003243 ORTHO05D003717 1.7e-08 63.9 260 51.9
BcaNung04682 Brassica carinata HOM05D003243 ORTHO05D003717 2.2e-08 63.5 34 88.2
Phvul.001G065400 Phaseolus vulgaris HOM05D003243 ORTHO05D003717 2.9e-08 63.2 258 51.9
Psat6g071440 Pisum sativum HOM05D003243 ORTHO05D003717 2.9e-08 63.2 107 75.7
HPP92_025185 Vanilla planifolia HOM05D003243 ORTHO05D003717 2.9e-08 63.2 107 72.9
EL10Ac1g01412 Beta vulgaris HOM05D003243 ORTHO05D003717 3.8e-08 62.8 254 48.8
Os05g0425700 Oryza sativa ssp. japonica HOM05D003243 ORTHO05D003717 4.9e-08 62.4 106 70.8
Actinidia15183 Actinidia chinensis HOM05D003243 ORTHO05D003717 1.4e-07 60.8 258 48.8
VMungo1309G2691 Vigna mungo HOM05D003243 ORTHO05D003717 1.4e-07 60.8 253 50.2
Phvul.009G133200 Phaseolus vulgaris HOM05D003243 ORTHO05D003717 1.9e-07 60.5 253 50.2
HanXRQChr09g0248731 Helianthus annuus HOM05D000470 ORTHO05D000348 2.4e-07 60.1 108 51.9
CAN.G1540.1 Capsicum annuum HOM05D003243 ORTHO05D000045 4.2e-07 59.3 132 29.5
Ah.05g169240 Amaranthus hybridus HOM05D003243 ORTHO05D003717 7.1e-07 58.5 254 47.6
HanXRQChr10g0309301 Helianthus annuus HOM05D003243 ORTHO05D003717 9.3e-07 58.2 182 39.6
Ca_16639_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 1.2e-06 57.8 258 50.4
CDE12G0899 Ceratophyllum demersum HOM05D003243 ORTHO05D003717 1.6e-06 57.4 68 39.7
Glyma.14G118200 Glycine max HOM05D003243 ORTHO05D003717 2.7e-06 56.6 258 49.2
Sed0024660 Sechium edule HOM05D003243 ORTHO05D003717 2.7e-06 56.6 258 49.2
SMO259G0006 Selaginella moellendorffii HOM05D003243 ORTHO05D003717 2.7e-06 56.6 115 47.8
Ca_11513_v3 Cicer arietinum L. HOM05D003243 ORTHO05D003717 6.0e-06 55.5 50 56.0
HanXRQChr09g0257191 Helianthus annuus HOM05D003243 ORTHO05D003717 6.0e-06 55.5 243 42.8
HanXRQChr04g0109741 Helianthus annuus HOM05D003243 ORTHO05D003717 7.8e-06 55.1 119 58.0


User provided reference genes

Program Settings