Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g26457 Brassica carinata HOM05D000124 ORTHO05D000056 8.9e-40 166.4 79 100.0
BraA07t28725Z Brassica rapa HOM05D000124 ORTHO05D000056 1.6e-36 155.6 75 97.3
A07p09260 Brassica napus HOM05D000124 ORTHO05D000056 3.0e-35 151.4 75 96.0
C07p14310 Brassica napus HOM05D000124 ORTHO05D000056 3.0e-35 151.4 75 94.7
BolC7t41924H Brassica oleracea HOM05D000124 ORTHO05D000056 4.3e-34 147.5 73 95.9
Sp3g20870 Schrenkiella parvula HOM05D000124 ORTHO05D000056 1.5e-31 139.0 79 86.1
Thhalv10022200m.g Eutrema salsugineum HOM05D000124 ORTHO05D000056 1.3e-27 125.9 80 81.2
A01p31820 Brassica napus HOM05D000124 ORTHO05D000056 3.9e-27 124.4 73 79.5
BraA01t03306Z Brassica rapa HOM05D000124 ORTHO05D000056 3.9e-27 124.4 73 79.5
BcaB04g20463 Brassica carinata HOM05D000124 ORTHO05D000056 1.1e-26 122.9 79 78.5
AL3G37870 Arabidopsis lyrata HOM05D000124 ORTHO05D000056 4.2e-21 104.4 79 64.6
Carub.0003s2345 Capsella rubella HOM05D000124 ORTHO05D000056 4.2e-21 104.4 82 63.4
CARHR099170 Cardamine hirsuta HOM05D000124 ORTHO05D000056 1.3e-17 92.8 80 62.5
AT3G23220 Arabidopsis thaliana HOM05D000124 ORTHO05D000056 2.8e-17 91.7 80 62.5
Aa31LG8G9720 Aethionema arabicum HOM05D000124 ORTHO05D000056 1.2e-12 76.3 68 60.3
THA.LOC104809088 Tarenaya hassleriana HOM05D000124 ORTHO05D000056 1.0e-11 73.2 71 57.7
BcaNung05656 Brassica carinata HOM05D000124 ORTHO05D000056 2.5e-10 68.6 71 53.5
A10p02810 Brassica napus HOM05D000124 ORTHO05D000056 2.5e-10 68.6 71 53.5
C05p02560 Brassica napus HOM05D000124 ORTHO05D000056 2.5e-10 68.6 71 53.5
BolC5t29037H Brassica oleracea HOM05D000124 ORTHO05D000056 2.5e-10 68.6 71 53.5
BraA10t42548Z Brassica rapa HOM05D000124 ORTHO05D000056 2.5e-10 68.6 71 53.5
Ah.04g156030 Amaranthus hybridus HOM05D000124 ORTHO05D000056 5.6e-10 67.4 71 54.9
BcaC05g24445 Brassica carinata HOM05D000124 ORTHO05D000056 5.6e-10 67.4 71 54.9
CARHR003700 Cardamine hirsuta HOM05D000124 ORTHO05D000056 7.4e-10 67.0 70 54.3
Psat6g055520 Pisum sativum HOM05D000124 ORTHO05D000056 7.4e-10 67.0 67 58.2
CsaV3_3G012190 Cucumis sativus L. HOM05D000124 ORTHO05D000056 9.6e-10 66.6 66 51.5
Thhalv10009418m.g Eutrema salsugineum HOM05D000124 ORTHO05D000056 9.6e-10 66.6 77 50.6
A09p67890 Brassica napus HOM05D000124 ORTHO05D000056 1.3e-09 66.2 70 52.9
Lj3P802T40 Lonicera japonica HOM05D000124 ORTHO05D000056 1.3e-09 66.2 66 51.5
Carub.0001s0354 Capsella rubella HOM05D000124 ORTHO05D000056 3.7e-09 64.7 70 51.4
Gohir.A09G226400 Gossypium hirsutum HOM05D000124 ORTHO05D000056 3.7e-09 64.7 66 56.1
Sp1g03180 Schrenkiella parvula HOM05D000124 ORTHO05D000056 6.2e-09 63.9 71 52.1
MSTRG.9899 Avicennia marina HOM05D000124 ORTHO05D000056 8.1e-09 63.5 63 55.6
AT1G04370 Arabidopsis thaliana HOM05D000124 ORTHO05D000056 1.1e-08 63.2 70 51.4
TPR.G33071 Trifolium pratense HOM05D000124 ORTHO05D000056 1.1e-08 63.2 72 54.2
Ciclev10007133m.g Citrus clementina HOM05D000124 ORTHO05D000056 1.4e-08 62.8 78 48.7
Oeu021431.1 Olea europaea HOM05D000124 ORTHO05D000056 1.4e-08 62.8 64 56.2
TWI73G1086 Tripterygium wilfordii HOM05D000124 ORTHO05D000056 1.4e-08 62.8 72 48.6
PGR004G0964 Punica granatum HOM05D000124 ORTHO05D000056 2.4e-08 62.0 69 58.0
MD13G1212700 Malus domestica HOM05D000124 ORTHO05D000056 3.1e-08 61.6 67 50.7
Nitab4.5_0000086g0010 Nicotiana tabacum HOM05D000124 ORTHO05D000056 3.1e-08 61.6 62 54.8
Eucgr.H03090 Eucalyptus grandis HOM05D000124 ORTHO05D000056 4.0e-08 61.2 70 50.0
Hma1.2p1_0267F.1_g107340 Hydrangea macrophylla HOM05D000124 ORTHO05D000056 4.0e-08 61.2 66 51.5
Peaxi162Scf00690g00052 Petunia axillaris HOM05D000124 ORTHO05D000056 4.0e-08 61.2 70 47.1
TWI09G1186 Tripterygium wilfordii HOM05D000124 ORTHO05D000056 5.3e-08 60.8 63 50.8
AL1G13970 Arabidopsis lyrata HOM05D000124 ORTHO05D000056 6.9e-08 60.5 78 47.4
Peaxi162Scf00024g00271 Petunia axillaris HOM05D000124 ORTHO05D000056 6.9e-08 60.5 70 48.6
SalBow4G0052 Salvia bowleyana HOM05D000124 ORTHO05D000056 6.9e-08 60.5 66 51.5
SalBow4G2745 Salvia bowleyana HOM05D000124 ORTHO05D000056 6.9e-08 60.5 66 51.5
Lalb_Chr02g0152341 Lupinus albus HOM05D000124 ORTHO05D000056 9.0e-08 60.1 76 46.1
Nn3g19629 Nelumbo nucifera HOM05D000124 ORTHO05D000056 1.2e-07 59.7 67 49.3
Oeu025838.1 Olea europaea HOM05D000124 ORTHO05D000056 1.2e-07 59.7 66 50.0
Sed0006324 Sechium edule HOM05D000124 ORTHO05D000056 1.2e-07 59.7 66 51.5
THA.LOC104815990 Tarenaya hassleriana HOM05D000124 ORTHO05D000056 1.2e-07 59.7 74 44.6
BcaB07g31009 Brassica carinata HOM05D000124 ORTHO05D000056 1.5e-07 59.3 71 50.7
Glyma.10G007100 Glycine max HOM05D000124 ORTHO05D000056 1.5e-07 59.3 67 50.7
PGSC0003DMG400017233 Solanum tuberosum HOM05D000124 ORTHO05D000056 1.5e-07 59.3 70 47.1
Gohir.D09G227200 Gossypium hirsutum HOM05D000124 ORTHO05D000056 2.6e-07 58.5 66 51.5
Gorai.006G249800 Gossypium raimondii HOM05D000124 ORTHO05D000056 2.6e-07 58.5 66 51.5
AL8G16930 Arabidopsis lyrata HOM05D000124 ORTHO05D000056 3.4e-07 58.2 63 50.8
BcaC07g42169 Brassica carinata HOM05D000124 ORTHO05D000056 3.4e-07 58.2 70 48.6
BcaC07g42188 Brassica carinata HOM05D000124 ORTHO05D000056 3.4e-07 58.2 70 48.6
C08p52230 Brassica napus HOM05D000124 ORTHO05D000056 3.4e-07 58.2 70 48.6
BolC8t52757H Brassica oleracea HOM05D000124 ORTHO05D000056 3.4e-07 58.2 70 48.6
BraA09t42122Z Brassica rapa HOM05D000124 ORTHO05D000056 3.4e-07 58.2 70 48.6
ECA236G1177 Erigeron canadensis HOM05D000124 ORTHO05D000056 3.4e-07 58.2 63 50.8
Thhalv10003355m.g Eutrema salsugineum HOM05D000124 ORTHO05D000056 3.4e-07 58.2 78 43.6
Nitab4.5_0005846g0020 Nicotiana tabacum HOM05D000124 ORTHO05D000056 3.4e-07 58.2 62 54.8
Oeu060960.1 Olea europaea HOM05D000124 ORTHO05D000056 3.4e-07 58.2 66 48.5
BcaC07g42189 Brassica carinata HOM05D000124 ORTHO05D000056 4.5e-07 57.8 70 48.6
Rhsim01G0264800 Rhododendron simsii HOM05D000124 ORTHO05D000056 4.5e-07 57.8 72 44.4
Sopen03g001520 Solanum pennellii HOM05D000124 ORTHO05D000056 4.5e-07 57.8 73 42.5
MELO3C015739.2 Cucumis melo HOM05D000124 ORTHO05D000056 5.8e-07 57.4 80 48.8
Glyma.10G036200 Glycine max HOM05D000124 ORTHO05D000056 5.8e-07 57.4 73 45.2
Sed0008378 Sechium edule HOM05D000124 ORTHO05D000056 5.8e-07 57.4 66 48.5
TAR636G3561 Trochodendron aralioides HOM05D000124 ORTHO05D000056 5.8e-07 57.4 65 52.3
Haze_11350 Corylus avellana HOM05D000124 ORTHO05D000056 7.6e-07 57.0 80 45.0
Duzib212G0193 Durio zibethinus HOM05D000124 ORTHO05D000056 7.6e-07 57.0 69 47.8
Atru.chr4.2086 Acer truncatum HOM05D000124 ORTHO05D000056 9.9e-07 56.6 79 44.3
Glyma.13G122500 Glycine max HOM05D000124 ORTHO05D000056 9.9e-07 56.6 73 45.2
Medtr1g070070 Medicago truncatula HOM05D000124 ORTHO05D000056 9.9e-07 56.6 70 47.1
Sp2g08290 Schrenkiella parvula HOM05D000124 ORTHO05D000056 9.9e-07 56.6 78 43.6
PGSC0003DMG400013401 Solanum tuberosum HOM05D000124 ORTHO05D000056 9.9e-07 56.6 72 44.4
A09p20460 Brassica napus HOM05D000124 ORTHO05D000056 1.3e-06 56.2 71 49.3
BraA09t37651Z Brassica rapa HOM05D000124 ORTHO05D000056 1.3e-06 56.2 71 49.3
ECA236G3019 Erigeron canadensis HOM05D000124 ORTHO05D000056 1.3e-06 56.2 63 47.6
Oeu019981.1 Olea europaea HOM05D000124 ORTHO05D000056 1.3e-06 56.2 63 52.4
Sabra10G0035600 Salix brachista HOM05D000124 ORTHO05D000056 1.3e-06 56.2 74 50.0
Eucgr.H00172 Eucalyptus grandis HOM05D000124 ORTHO05D000056 1.7e-06 55.8 66 51.5
Gohir.A09G226600 Gossypium hirsutum HOM05D000124 ORTHO05D000056 1.7e-06 55.8 66 50.0
MD16G1216400 Malus domestica HOM05D000124 ORTHO05D000056 1.7e-06 55.8 67 47.8
Aa31LG5G3700 Aethionema arabicum HOM05D000124 ORTHO05D000056 2.2e-06 55.5 71 45.1
AT5G43410 Arabidopsis thaliana HOM05D000124 ORTHO05D000056 2.2e-06 55.5 70 47.1
MELO3C006432.2 Cucumis melo HOM05D000124 ORTHO05D000056 2.2e-06 55.5 66 47.0
Potri.010G072400 Populus trichocarpa HOM05D000124 ORTHO05D000056 2.2e-06 55.5 74 45.9
Potri.010G072600 Populus trichocarpa HOM05D000124 ORTHO05D000056 2.2e-06 55.5 66 48.5
MSTRG.4128 Avicennia marina HOM05D000124 ORTHO05D000056 2.9e-06 55.1 64 51.6
CSS0039495 Camellia sinensis var. sinensis HOM05D000124 ORTHO05D000056 2.9e-06 55.1 62 46.8
Ca_08665_v3 Cicer arietinum L. HOM05D000124 ORTHO05D000056 2.9e-06 55.1 65 49.2
Duzib151G0605 Durio zibethinus HOM05D000124 ORTHO05D000056 2.9e-06 55.1 68 45.6
Migut.G00476 Erythranthe guttata HOM05D000124 ORTHO05D000056 2.9e-06 55.1 71 50.7
Gorai.006G250100 Gossypium raimondii HOM05D000124 ORTHO05D000056 2.9e-06 55.1 71 50.7
HanXRQChr15g0467911 Helianthus annuus HOM05D000124 ORTHO05D000056 2.9e-06 55.1 70 45.7
Potri.008G166000 Populus trichocarpa HOM05D000124 ORTHO05D000056 2.9e-06 55.1 66 48.5
Solyc03g005500.1 Solanum lycopersicum HOM05D000124 ORTHO05D000056 2.9e-06 55.1 73 41.1
Sopen09g032850 Solanum pennellii HOM05D000124 ORTHO05D000056 2.9e-06 55.1 70 47.1
BcaC04g21916 Brassica carinata HOM05D000124 ORTHO05D000056 3.8e-06 54.7 67 50.7
C09p25840 Brassica napus HOM05D000124 ORTHO05D000056 3.8e-06 54.7 67 50.7
BolC1t04026H Brassica oleracea HOM05D000124 ORTHO05D000056 3.8e-06 54.7 26 88.5
BolC9t55492H Brassica oleracea HOM05D000124 ORTHO05D000056 3.8e-06 54.7 67 50.7
AUR62028234 Chenopodium quinoa HOM05D000124 ORTHO05D000056 3.8e-06 54.7 66 51.5
Dinv29876 Davidia involucrata HOM05D000124 ORTHO05D000056 3.8e-06 54.7 67 44.8
Sabra08G0126500 Salix brachista HOM05D000124 ORTHO05D000056 3.8e-06 54.7 63 50.8
TPR.G26432 Trifolium pratense HOM05D000124 ORTHO05D000056 3.8e-06 54.7 70 47.1
Actinidia39896 Actinidia chinensis HOM05D000124 ORTHO05D000056 4.9e-06 54.3 73 46.6
CiPaw.03G263000 Carya illinoinensis HOM05D000124 ORTHO05D000056 4.9e-06 54.3 65 46.2
Gohir.A07G212200 Gossypium hirsutum HOM05D000124 ORTHO05D000056 4.9e-06 54.3 63 47.6
Nitab4.5_0001441g0060 Nicotiana tabacum HOM05D000124 ORTHO05D000056 4.9e-06 54.3 70 45.7
Nitab4.5_0002852g0020 Nicotiana tabacum HOM05D000124 ORTHO05D000056 4.9e-06 54.3 66 50.0
Sed0023221 Sechium edule HOM05D000124 ORTHO05D000056 4.9e-06 54.3 66 45.5
PGSC0003DMG400040918 Solanum tuberosum HOM05D000124 ORTHO05D000056 4.9e-06 54.3 62 51.6
CSS0041850 Camellia sinensis var. sinensis HOM05D000124 ORTHO05D000056 6.4e-06 53.9 84 41.7
AUR62002113 Chenopodium quinoa HOM05D000124 ORTHO05D000056 6.4e-06 53.9 66 50.0
Haze_24620 Corylus avellana HOM05D000124 ORTHO05D000056 6.4e-06 53.9 82 41.5
Glyma.10G187000 Glycine max HOM05D000124 ORTHO05D000056 6.4e-06 53.9 74 44.6
Gohir.A07G212300 Gossypium hirsutum HOM05D000124 ORTHO05D000056 6.4e-06 53.9 63 47.6
Gohir.D07G154500 Gossypium hirsutum HOM05D000124 ORTHO05D000056 6.4e-06 53.9 63 49.2
Gorai.001G176700 Gossypium raimondii HOM05D000124 ORTHO05D000056 6.4e-06 53.9 63 49.2
Lj1C65T20 Lonicera japonica HOM05D000124 ORTHO05D000056 6.4e-06 53.9 64 50.0
Thecc.04G253500 Theobroma cacao HOM05D000124 ORTHO05D000056 6.4e-06 53.9 77 42.9
CSS0036725 Camellia sinensis var. sinensis HOM05D000124 ORTHO05D000056 8.4e-06 53.5 85 41.2
Carub.0008s0519 Capsella rubella HOM05D000124 ORTHO05D000056 8.4e-06 53.5 67 46.3
CiPaw.01G186400 Carya illinoinensis HOM05D000124 ORTHO05D000056 8.4e-06 53.5 74 43.2
Gohir.A07G148300 Gossypium hirsutum HOM05D000124 ORTHO05D000056 8.4e-06 53.5 64 50.0
Gohir.D02G044600 Gossypium hirsutum HOM05D000124 ORTHO05D000056 8.4e-06 53.5 65 50.8
Gohir.D07G218233 Gossypium hirsutum HOM05D000124 ORTHO05D000056 8.4e-06 53.5 62 50.0
Gorai.005G049200 Gossypium raimondii HOM05D000124 ORTHO05D000056 8.4e-06 53.5 65 50.8
Manes.15G092200 Manihot esculenta HOM05D000124 ORTHO05D000056 8.4e-06 53.5 75 45.3
Nn1g02735 Nelumbo nucifera HOM05D000124 ORTHO05D000056 8.4e-06 53.5 64 54.7
Nn1g02737 Nelumbo nucifera HOM05D000124 ORTHO05D000056 8.4e-06 53.5 75 45.3
Phvul.007G193900 Phaseolus vulgaris HOM05D000124 ORTHO05D000056 8.4e-06 53.5 73 45.2
SalBow2G3004 Salvia bowleyana HOM05D000124 ORTHO05D000056 8.4e-06 53.5 65 49.2
Thecc.04G253400 Theobroma cacao HOM05D000124 ORTHO05D000056 8.4e-06 53.5 67 49.3


User provided reference genes

Program Settings