Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g25724 Brassica carinata HOM05D004877 ORTHO05D005942 5.8e-189 664.1 335 100.0
BcaC05g28894 Brassica carinata HOM05D004877 ORTHO05D005942 2.2e-172 609.0 341 93.5
BraA05t22146Z Brassica rapa HOM05D004877 ORTHO05D005942 6.4e-172 607.4 338 93.8
C05p50190 Brassica napus HOM05D004877 ORTHO05D005942 4.8e-167 591.3 335 92.5
BolC5t33769H Brassica oleracea HOM05D004877 ORTHO05D005942 4.8e-167 591.3 335 92.5
Thhalv10021095m.g Eutrema salsugineum HOM05D004877 ORTHO05D005942 1.1e-163 580.1 340 87.9
Sp3g14680 Schrenkiella parvula HOM05D004877 ORTHO05D005942 7.1e-163 577.4 339 89.1
AT3G16310 Arabidopsis thaliana HOM05D004877 ORTHO05D005942 1.2e-157 560.1 337 86.6
AL3G29060 Arabidopsis lyrata HOM05D004877 ORTHO05D005942 8.4e-156 553.9 337 85.5
CARHR091520 Cardamine hirsuta HOM05D004877 ORTHO05D005942 4.3e-152 541.6 330 86.1
Carub.0003s1606 Capsella rubella HOM05D004877 ORTHO05D005942 1.8e-150 536.2 338 84.3
Aa31LG8G3450 Aethionema arabicum HOM05D004877 ORTHO05D005942 6.0e-146 521.2 335 80.3
THA.LOC104817965 Tarenaya hassleriana HOM05D004877 ORTHO05D005942 1.5e-144 516.5 339 80.5
Manes.04G132600 Manihot esculenta HOM05D004877 ORTHO05D005942 2.1e-130 469.5 340 73.8
TWI18G0989 Tripterygium wilfordii HOM05D004877 ORTHO05D005942 2.1e-130 469.5 339 73.5
Thecc.06G097500 Theobroma cacao HOM05D004877 ORTHO05D005942 1.5e-128 463.4 336 72.3
Atru.chr1.3498 Acer truncatum HOM05D004877 ORTHO05D005942 7.4e-128 461.1 339 71.4
QL05p020530 Quercus lobata HOM05D004877 ORTHO05D005942 2.8e-127 459.1 338 72.2
Duzib235G0210 Durio zibethinus HOM05D004877 ORTHO05D005942 4.8e-127 458.4 334 72.2
Gohir.A02G118600 Gossypium hirsutum HOM05D004877 ORTHO05D005942 6.9e-126 454.5 334 70.4
Gorai.003G063100 Gossypium raimondii HOM05D004877 ORTHO05D005942 2.6e-125 452.6 334 70.1
Ciclev10026016m.g Citrus clementina HOM05D004877 ORTHO05D005942 5.9e-125 451.4 345 70.7
Manes.11G035000 Manihot esculenta HOM05D004877 ORTHO05D005942 2.2e-124 449.5 337 70.9
Eucgr.J02948 Eucalyptus grandis HOM05D004877 ORTHO05D005942 1.1e-123 447.2 337 69.7
Gohir.D03G059200 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.4e-123 446.8 334 69.5
CiPaw.01G232800 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.5e-123 446.0 340 69.1
Potri.001G188300 Populus trichocarpa HOM05D004877 ORTHO05D005942 4.2e-123 445.3 332 71.7
MD09G1205800 Malus domestica HOM05D004877 ORTHO05D005942 9.4e-123 444.1 339 70.5
Duzib192G0168 Durio zibethinus HOM05D004877 ORTHO05D005942 4.7e-122 441.8 333 69.7
GSVIVG01017013001 Vitis vinifera HOM05D004877 ORTHO05D005942 6.1e-122 441.4 336 69.6
Sabra01G0152700 Salix brachista HOM05D004877 ORTHO05D005942 7.9e-122 441.0 340 69.1
arahy.Tifrunner.gnm1.ann1.64XDM2 Arachis hypogaea HOM05D004877 ORTHO05D005942 3.0e-121 439.1 338 68.9
CANSAT01G3179 Cannabis sativa HOM05D004877 ORTHO05D005942 5.2e-121 438.3 337 68.5
Lj3g0003786 Lotus japonicus HOM05D004877 ORTHO05D005942 1.1e-120 437.2 338 68.3
MD17G1186700 Malus domestica HOM05D004877 ORTHO05D005942 1.1e-120 437.2 339 68.7
PGR102G2474 Punica granatum HOM05D004877 ORTHO05D005942 1.1e-120 437.2 342 69.6
VMungo1080G0916 Vigna mungo HOM05D004877 ORTHO05D005942 1.1e-120 437.2 338 68.6
arahy.Tifrunner.gnm1.ann1.4Y1F7A Arachis hypogaea HOM05D004877 ORTHO05D005942 2.6e-120 436.0 338 68.3
COL.COLO4_30486 Corchorus olitorius HOM05D004877 ORTHO05D005942 1.3e-119 433.7 337 70.6
Glyma.15G018900 Glycine max HOM05D004877 ORTHO05D005942 1.7e-119 433.3 338 68.6
Gohir.D03G059150 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.7e-119 433.3 321 70.4
Medtr2g101270 Medicago truncatula HOM05D004877 ORTHO05D005942 1.7e-119 433.3 338 67.8
Phvul.005G167000 Phaseolus vulgaris HOM05D004877 ORTHO05D005942 2.2e-119 433.0 338 68.3
Prupe.3G061200 Prunus persica HOM05D004877 ORTHO05D005942 2.8e-119 432.6 339 67.6
Ca_01157_v3 Cicer arietinum L. HOM05D004877 ORTHO05D005942 8.2e-119 431.0 338 67.5
Actinidia32706 Actinidia chinensis HOM05D004877 ORTHO05D005942 1.1e-118 430.6 344 68.6
Glyma.13G355300 Glycine max HOM05D004877 ORTHO05D005942 1.1e-118 430.6 338 68.6
Psat5g297080 Pisum sativum HOM05D004877 ORTHO05D005942 7.0e-118 427.9 338 67.2
RcHm_v2.0_Chr2g0140061 Rosa chinensis HOM05D004877 ORTHO05D005942 9.1e-118 427.6 339 67.8
SalBow1G2757 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.1e-118 427.6 343 67.9
SalBow2G1418 Salvia bowleyana HOM05D004877 ORTHO05D005942 9.1e-118 427.6 343 67.9
Dinv37993 Davidia involucrata HOM05D004877 ORTHO05D005942 1.2e-117 427.2 343 67.9
AUR62031885 Chenopodium quinoa HOM05D004877 ORTHO05D005942 3.5e-117 425.6 337 66.8
Nitab4.5_0003167g0040 Nicotiana tabacum HOM05D004877 ORTHO05D005942 4.5e-117 425.2 342 67.0
AUR62022182 Chenopodium quinoa HOM05D004877 ORTHO05D005942 5.9e-117 424.9 337 67.4
Sc10g0007170 Simmondsia chinensis HOM05D004877 ORTHO05D005942 5.9e-117 424.9 337 67.7
TPR.G37257 Trifolium pratense HOM05D004877 ORTHO05D005942 5.9e-117 424.9 339 66.7
Lalb_Chr24g0396111 Lupinus albus HOM05D004877 ORTHO05D005942 7.7e-117 424.5 338 69.8
FAN05G1125 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.0e-116 424.1 339 67.0
Dinv30451 Davidia involucrata HOM05D004877 ORTHO05D005942 1.3e-116 423.7 341 66.6
CiPaw.02G146900 Carya illinoinensis HOM05D004877 ORTHO05D005942 2.2e-116 422.9 340 66.8
CSS0014120 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 5.0e-116 421.8 342 66.7
Nitab4.5_0001755g0090 Nicotiana tabacum HOM05D004877 ORTHO05D005942 5.0e-116 421.8 342 66.4
Ah.01g005680 Amaranthus hybridus HOM05D004877 ORTHO05D005942 6.5e-116 421.4 337 66.2
Hund06654 Selenicereus undatus HOM05D004877 ORTHO05D005942 6.5e-116 421.4 334 68.6
FAN14G1716 Fragaria x ananassa HOM05D004877 ORTHO05D005942 1.1e-115 420.6 341 67.2
Peaxi162Scf00038g00844 Petunia axillaris HOM05D004877 ORTHO05D005942 1.1e-115 420.6 344 66.6
FvH4_6g32170 Fragaria vesca HOM05D004877 ORTHO05D005942 1.5e-115 420.2 341 67.2
Sc10g0007240 Simmondsia chinensis HOM05D004877 ORTHO05D005942 1.9e-115 419.9 337 67.1
Cc04_g02700 Coffea canephora HOM05D004877 ORTHO05D005942 2.5e-115 419.5 342 69.0
Lalb_Chr14g0373091 Lupinus albus HOM05D004877 ORTHO05D005942 3.2e-115 419.1 338 68.3
Lj9A511G47 Lonicera japonica HOM05D004877 ORTHO05D005942 1.2e-114 417.2 345 66.7
TAR636G0039 Trochodendron aralioides HOM05D004877 ORTHO05D005942 1.2e-114 417.2 336 66.1
Gorai.011G072600 Gossypium raimondii HOM05D004877 ORTHO05D005942 1.6e-114 416.8 334 66.2
FAN09G1375 Fragaria x ananassa HOM05D004877 ORTHO05D005942 2.1e-114 416.4 339 66.4
TAR624G0319 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.7e-114 416.0 336 65.2
CAN.G438.5 Capsicum annuum HOM05D004877 ORTHO05D005942 3.6e-114 415.6 342 64.3
ClCG09G000060 Citrullus lanatus HOM05D004877 ORTHO05D005942 4.7e-114 415.2 340 67.1
FAN02G1875 Fragaria x ananassa HOM05D004877 ORTHO05D005942 4.7e-114 415.2 341 66.9
Sopen03g039700 Solanum pennellii HOM05D004877 ORTHO05D005942 1.4e-113 413.7 344 64.8
CsaV3_7G035410 Cucumis sativus L. HOM05D004877 ORTHO05D005942 1.8e-113 413.3 340 67.1
PGSC0003DMG400002534 Solanum tuberosum HOM05D004877 ORTHO05D005942 2.3e-113 412.9 344 64.2
Gohir.A10G066900 Gossypium hirsutum HOM05D004877 ORTHO05D005942 2.6e-112 409.5 331 65.6
Solyc03g120880.4 Solanum lycopersicum HOM05D004877 ORTHO05D005942 2.6e-112 409.5 344 64.2
EL10Ac9g22101 Beta vulgaris HOM05D004877 ORTHO05D005942 4.4e-112 408.7 382 59.2
MELO3C024450.2 Cucumis melo HOM05D004877 ORTHO05D005942 7.5e-112 407.9 340 65.9
Hund00671 Selenicereus undatus HOM05D004877 ORTHO05D005942 1.7e-111 406.8 337 64.1
Sed0013882 Sechium edule HOM05D004877 ORTHO05D005942 4.8e-111 405.2 340 65.6
Rhsim08G0226300 Rhododendron simsii HOM05D004877 ORTHO05D005942 5.3e-110 401.7 346 65.3
Nn8g39120 Nelumbo nucifera HOM05D004877 ORTHO05D005942 9.1e-110 401.0 360 60.6
Oeu001891.1 Olea europaea HOM05D004877 ORTHO05D005942 3.5e-109 399.1 337 63.8
Gohir.D10G068000 Gossypium hirsutum HOM05D004877 ORTHO05D005942 1.3e-108 397.1 331 64.0
CSS0036359 Camellia sinensis var. sinensis HOM05D004877 ORTHO05D005942 1.7e-108 396.7 346 64.7
MBI01_g42890_MAGBIO Magnolia biondii HOM05D004877 ORTHO05D005942 1.1e-107 394.0 340 62.1
MSTRG.22647 Avicennia marina HOM05D004877 ORTHO05D005942 3.6e-106 389.0 342 62.6
DCAR_016196 Daucus carota HOM05D004877 ORTHO05D005942 3.6e-106 389.0 341 63.0
SGA_v2.0_scaffold69G23330 Striga asiatica HOM05D004877 ORTHO05D005942 6.8e-105 384.8 343 62.4
Aqoxy7G01469 Aquilegia oxysepala HOM05D004877 ORTHO05D005942 1.2e-104 384.0 339 59.9
Lsat_1_v5_gn_4_99980 Lactuca sativa HOM05D004877 ORTHO05D005942 1.2e-104 384.0 356 60.4
MSTRG.11036 Avicennia marina HOM05D004877 ORTHO05D005942 3.7e-103 379.0 342 63.5
PSO173G0077 Papaver somniferum HOM05D004877 ORTHO05D005942 4.5e-101 372.1 350 59.4
Sed0014944 Sechium edule HOM05D004877 ORTHO05D005942 5.9e-101 371.7 337 61.7
CDE05G3078 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 1.3e-100 370.5 336 58.3
PSO832G2273 Papaver somniferum HOM05D004877 ORTHO05D005942 1.3e-100 370.5 349 58.5
arahy.Tifrunner.gnm1.ann1.NE95XN Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-100 370.2 358 58.9
arahy.Tifrunner.gnm1.ann1.WG6QSW Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-100 370.2 358 58.9
HanXRQChr09g0275881 Helianthus annuus HOM05D004877 ORTHO05D005942 8.6e-100 367.9 356 59.0
Cpa.g.c40702 Carica papaya HOM05D004877 ORTHO05D005942 4.2e-99 365.5 265 70.9
Lj9A524G48 Lonicera japonica HOM05D004877 ORTHO05D005942 3.0e-97 359.4 360 59.7
ATR0705G205 Amborella trichopoda HOM05D004877 ORTHO05D005942 2.6e-96 356.3 355 55.8
ECA232G1650 Erigeron canadensis HOM05D004877 ORTHO05D005942 5.7e-96 355.1 322 58.7
unitig_46.g18560 Utricularia gibba HOM05D004877 ORTHO05D005942 8.3e-95 351.3 346 57.5
CDE05G1429 Ceratophyllum demersum HOM05D004877 ORTHO05D005942 3.1e-94 349.4 334 56.0
vmacro18867 Vaccinium macrocarpon HOM05D004877 ORTHO05D005942 1.6e-93 347.1 286 66.8
unitig_37.g12259 Utricularia gibba HOM05D004877 ORTHO05D005942 1.6e-90 337.0 333 57.1
Haze_15830 Corylus avellana HOM05D002410 ORTHO05D002805 1.9e-78 297.0 326 55.5
TAR624G1397 Trochodendron aralioides HOM05D004877 ORTHO05D005942 2.3e-76 290.0 230 64.3
HanXRQChr16g0501211 Helianthus annuus HOM05D004877 ORTHO05D005942 9.9e-72 274.6 351 47.3
Haze_15829 Corylus avellana HOM05D004877 ORTHO05D005942 4.3e-67 259.2 256 55.5
Peaxi162Scf00894g00009 Petunia axillaris HOM05D004877 ORTHO05D005942 7.3e-67 258.5 215 64.7
Actinidia39142 Actinidia chinensis HOM05D004877 ORTHO05D005942 2.8e-66 256.5 247 60.3
Pp3c6_16260 Physcomitrium patens HOM05D004877 ORTHO05D005942 7.6e-64 248.4 355 45.4
Pp3c5_15240 Physcomitrium patens HOM05D004877 ORTHO05D005942 7.1e-62 241.9 354 45.2
arahy.Tifrunner.gnm1.ann1.XV48AZ Arachis hypogaea HOM05D004877 ORTHO05D005942 1.7e-60 237.3 187 66.8
SEGI_39894 Sequoiadendron giganteum HOM05D004877 ORTHO05D005942 6.6e-60 235.3 383 43.1
Mapoly0014s0033 Marchantia polymorpha HOM05D004877 ORTHO05D005942 1.2e-58 231.1 352 44.6
Migut.I00909 Erythranthe guttata HOM05D004877 ORTHO05D005942 2.1e-58 230.3 277 56.3
Peaxi162Scf11517g00001 Petunia axillaris HOM05D004877 ORTHO05D005942 4.4e-56 222.6 193 63.2
Zm00001eb337990 Zea mays HOM05D004877 ORTHO05D005942 2.8e-50 203.4 359 40.9
Os01g0200500 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 2.4e-49 200.3 217 53.0
HPP92_002859 Vanilla planifolia HOM05D004877 ORTHO05D005942 6.7e-44 182.2 226 50.0
SMO144G0168 Selaginella moellendorffii HOM05D004877 ORTHO05D005942 4.8e-42 176.0 175 49.1
Zm00001eb293750 Zea mays HOM05D004877 ORTHO05D005942 1.7e-39 167.5 368 33.7
Os05g0520100 Oryza sativa ssp. japonica HOM05D004877 ORTHO05D005942 4.8e-34 149.4 368 33.7
AagrBONN_evm.TU.Sc2ySwM_117.2493 Anthoceros agrestis HOM05D004877 ORTHO05D005942 2.4e-33 147.1 345 35.7
PSO675G8939 Papaver somniferum HOM05D004877 ORTHO05D005942 6.3e-26 122.5 136 50.0
Nn2g11613 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.2e-24 118.2 118 55.9
Zm00001eb353450 Zea mays HOM05D004877 ORTHO05D005942 5.9e-24 115.9 366 30.6
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 7.6e-24 115.5 92 58.7
CBR_g44943 Chara braunii HOM05D004877 ORTHO05D005942 2.2e-23 114.0 149 45.6
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 2.9e-23 113.6 88 63.6
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.5e-22 110.5 92 56.5
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 1.0e-20 105.1 106 50.9
SEGI_33810 Sequoiadendron giganteum HOM05D004877 ORTHO05D000002 2.3e-20 104.0 127 48.8
MD07G1258000 Malus domestica HOM05D004877 ORTHO05D005942 5.3e-17 92.8 55 76.4
Cre12.g553050 Chlamydomonas reinhardtii HOM05D004877 ORTHO05D005942 1.3e-15 88.2 114 41.2
PRCOL_00002288 Prasinoderma coloniale HOM05D004877 ORTHO05D005942 6.5e-15 85.9 324 25.6
TAR624G1091 Trochodendron aralioides HOM05D004877 ORTHO05D005942 6.5e-15 85.9 60 71.7
MD16G1217600 Malus domestica HOM05D004877 ORTHO05D005942 1.9e-14 84.3 71 57.7
Nn5g29960 Nelumbo nucifera HOM05D004877 ORTHO05D005942 1.9e-14 84.3 108 51.9
Cpa.g.c43067 Carica papaya HOM05D004877 ORTHO05D005942 4.7e-13 79.7 40 90.0
TAR629G0138 Trochodendron aralioides HOM05D004753 ORTHO05D005920 1.8e-12 77.8 81 53.1
Pp3c1_40780 Physcomitrium patens HOM05D004877 ORTHO05D005942 2.8e-10 70.5 162 34.0
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 9.1e-09 65.5 43 69.8
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 9.4e-06 55.5 38 68.4


User provided reference genes

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