Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.5e-119 431.8 246 100.0
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-75 286.6 282 64.9
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.8e-75 286.6 282 64.9
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.8e-75 286.6 282 64.9
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 2.7e-71 272.7 263 65.0
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 6.1e-71 271.6 266 64.7
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 4.9e-60 235.3 286 53.5
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 7.8e-58 228.0 285 53.3
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.6e-55 220.3 284 52.1
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.2e-52 209.9 279 50.9
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.9e-52 208.8 268 54.1
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.0e-49 201.1 295 48.1
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 6.8e-38 161.8 305 42.3
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-31 141.0 338 39.1
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.6e-31 140.6 312 37.5
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 3.8e-28 129.4 325 33.8
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.4e-27 126.7 298 36.9
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 2.4e-27 126.7 298 36.9
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 9.3e-27 124.8 328 32.9
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 6.6e-25 118.6 329 32.8
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 1.1e-24 117.9 312 33.7
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 1.1e-24 117.9 335 31.6
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.9e-24 117.1 322 32.9
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.9e-24 117.1 355 30.1
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 2.5e-24 116.7 331 32.0
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 2.5e-24 116.7 322 32.6
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.5e-24 116.7 322 32.6
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 3.3e-24 116.3 312 33.7
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 9.6e-24 114.8 322 32.6
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.6e-24 114.8 275 33.5
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 2.8e-23 113.2 328 33.8
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.4e-22 110.9 320 32.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 2.4e-22 110.2 367 30.0
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 3.1e-22 109.8 365 30.4
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 5.3e-22 109.0 273 35.2
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 5.3e-22 109.0 331 30.2
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.9e-22 108.6 348 29.9
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.2e-21 107.8 359 29.5
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 1.2e-21 107.8 340 29.4
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 2.0e-21 107.1 281 32.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 5.8e-21 105.5 341 29.9
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 5.8e-21 105.5 368 28.8
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 5.8e-21 105.5 277 33.6
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 7.6e-21 105.1 339 29.5
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.3e-20 104.4 339 28.9
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.7e-20 104.0 277 33.2
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.2e-20 103.6 280 32.5
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.9e-20 103.2 343 30.9
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 6.4e-20 102.1 269 34.2
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 1.1e-19 101.3 382 29.1
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.1e-19 101.3 249 33.7
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.1e-19 101.3 275 33.5
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.4e-19 100.9 384 27.3
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 3.2e-19 99.8 279 33.3
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 3.2e-19 99.8 312 29.8
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 4.2e-19 99.4 338 29.6
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 4.2e-19 99.4 352 30.7
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 4.2e-19 99.4 318 29.9
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 9.3e-19 98.2 337 30.6
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 1.2e-18 97.8 321 30.8
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 1.6e-18 97.4 371 27.8
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 1.6e-18 97.4 272 31.2
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.1e-18 97.1 250 33.2
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 2.1e-18 97.1 250 33.2
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 2.7e-18 96.7 173 41.0
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.9e-18 95.1 369 27.9
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 7.9e-18 95.1 369 27.9
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 7.9e-18 95.1 350 30.3
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.0e-17 94.7 372 29.3
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.0e-17 94.7 165 40.6
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.3e-17 94.4 334 30.2
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.8e-17 94.0 250 31.2
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 2.3e-17 93.6 368 27.7
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.3e-17 93.6 359 29.0
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.3e-17 93.6 165 41.8
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 3.0e-17 93.2 315 29.5
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 3.0e-17 93.2 352 28.1
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.1e-17 92.4 162 41.4
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 5.1e-17 92.4 366 28.1
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 5.1e-17 92.4 164 41.5
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 6.7e-17 92.0 312 30.4
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 8.7e-17 91.7 164 40.2
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 8.7e-17 91.7 296 30.4
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 1.5e-16 90.9 161 40.4
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 1.9e-16 90.5 370 27.6
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.9e-16 90.5 299 30.1
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 1.9e-16 90.5 357 27.5
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.9e-16 90.5 166 39.2
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 4.3e-16 89.4 305 29.2
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 4.3e-16 89.4 297 30.6
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 1.3e-15 87.8 136 41.9
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 1.6e-15 87.4 298 30.5
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.1e-15 87.0 144 42.4
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 4.8e-15 85.9 401 25.7
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 6.2e-15 85.5 294 28.9
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 8.1e-15 85.1 125 44.8
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.4e-14 84.3 164 40.2
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 2.4e-14 83.6 203 35.0
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 5.3e-14 82.4 316 28.2
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 6.9e-14 82.0 163 40.5
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 9.0e-14 81.6 187 33.2
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 9.0e-14 81.6 326 27.9
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.2e-13 81.3 290 31.0
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 2.0e-13 80.5 267 30.0
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.0e-13 80.5 180 37.2
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.6e-13 80.1 125 40.0
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 3.4e-13 79.7 267 30.0
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 7.6e-13 78.6 149 39.6
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 9.9e-13 78.2 126 40.5
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.3e-12 77.8 137 35.8
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.7e-12 77.4 126 40.5
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.7e-12 77.4 126 40.5
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 2.9e-12 76.6 137 38.7
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 4.9e-12 75.9 198 30.8
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 6.4e-12 75.5 164 35.4
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 6.4e-12 75.5 164 35.4
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.4e-12 75.5 211 32.7
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 8.4e-12 75.1 146 39.0
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 8.4e-12 75.1 219 32.4
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.4e-11 74.3 192 35.4
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.4e-11 74.3 261 29.5
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 2.4e-11 73.6 159 35.8
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.2e-11 73.2 166 35.5
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.2e-11 73.2 158 36.7
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.2e-11 72.8 119 41.2
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 4.2e-11 72.8 99 47.5
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 5.5e-11 72.4 142 34.5
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 5.5e-11 72.4 142 34.5
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-10 71.2 154 36.4
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 1.2e-10 71.2 189 33.3
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.7e-10 70.1 142 32.4
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.7e-10 70.1 158 34.2
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 2.7e-10 70.1 164 36.6
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.6e-10 69.3 146 37.0
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.0e-09 68.2 175 30.9
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.8e-09 67.4 183 29.0
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 3.9e-09 66.2 306 26.5
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 5.1e-09 65.9 98 48.0
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 8.7e-09 65.1 297 29.6
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 8.7e-09 65.1 297 29.6
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 8.7e-09 65.1 297 29.6
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.1e-08 64.7 158 29.7
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.5e-08 64.3 100 44.0
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.5e-08 64.3 100 44.0
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 1.9e-08 63.9 256 26.2
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 7.4e-08 62.0 272 29.8
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 7.4e-08 62.0 95 41.1
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 9.6e-08 61.6 86 43.0
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.1e-07 60.5 53 49.1
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 3.7e-07 59.7 249 29.7
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 4.8e-07 59.3 203 26.6
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.4e-06 57.8 205 27.3
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 2.4e-06 57.0 131 35.9
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 3.1e-06 56.6 124 35.5
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 3.1e-06 56.6 249 25.3
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 6.9e-06 55.5 166 33.1


User provided reference genes

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