Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB05g23450 Brassica carinata HOM05D005922 ORTHO05D006934 1.8e-74 282.3 131 100.0
BcaC08g45999 Brassica carinata HOM05D005922 ORTHO05D006934 6.8e-53 210.7 112 85.7
BolC6t38893H Brassica oleracea HOM05D005922 ORTHO05D006934 6.8e-53 210.7 112 85.7
A07p32170 Brassica napus HOM05D005922 ORTHO05D006934 8.9e-53 210.3 112 85.7
BraA07t30847Z Brassica rapa HOM05D005922 ORTHO05D006934 8.9e-53 210.3 112 85.7
Carub.0002s1456 Capsella rubella HOM05D005922 ORTHO05D006934 8.9e-53 210.3 112 86.6
AL2G26830 Arabidopsis lyrata HOM05D005922 ORTHO05D006934 1.2e-52 209.9 112 85.7
BcaB03g15398 Brassica carinata HOM05D005922 ORTHO05D006934 2.0e-52 209.1 112 84.8
C06p37940 Brassica napus HOM05D005922 ORTHO05D006934 2.6e-52 208.8 112 84.8
Sp5g23080 Schrenkiella parvula HOM05D005922 ORTHO05D006934 3.4e-52 208.4 112 84.8
Thhalv10018688m.g Eutrema salsugineum HOM05D005922 ORTHO05D006934 9.9e-52 206.8 112 83.0
BcaC08g45997 Brassica carinata HOM05D005922 ORTHO05D006934 3.5e-49 198.4 106 84.0
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 1.7e-48 196.1 112 77.7
THA.LOC104809799 Tarenaya hassleriana HOM05D005922 ORTHO05D006934 1.1e-47 193.4 112 76.8
Psat7g084400 Pisum sativum HOM05D005922 ORTHO05D006934 9.6e-47 190.3 112 75.9
TPR.G5128 Trifolium pratense HOM05D005922 ORTHO05D006934 3.6e-46 188.3 112 75.0
CAN.G282.103 Capsicum annuum HOM05D005922 ORTHO05D006934 6.2e-46 187.6 132 65.2
Haze_10819 Corylus avellana HOM05D005922 ORTHO05D006934 1.8e-45 186.0 119 71.4
Glyma.08G093700 Glycine max HOM05D005922 ORTHO05D006934 2.4e-45 185.7 112 73.2
Manes.17G088400 Manihot esculenta HOM05D005922 ORTHO05D006934 2.4e-45 185.7 112 72.3
Actinidia20108 Actinidia chinensis HOM05D005922 ORTHO05D006934 4.0e-45 184.9 112 74.1
Aqoxy3G04113 Aquilegia oxysepala HOM05D005922 ORTHO05D006934 4.0e-45 184.9 112 73.2
TAR622G0311 Trochodendron aralioides HOM05D005922 ORTHO05D006934 4.0e-45 184.9 112 72.3
GSVIVG01011600001 Vitis vinifera HOM05D005922 ORTHO05D006934 4.0e-45 184.9 112 74.1
Lalb_Chr13g0293631 Lupinus albus HOM05D005922 ORTHO05D006934 5.2e-45 184.5 112 71.4
PGSC0003DMG400022790 Solanum tuberosum HOM05D005922 ORTHO05D006934 8.9e-45 183.7 112 71.4
Solyc01g005100.4 Solanum lycopersicum HOM05D005922 ORTHO05D006934 1.2e-44 183.3 112 71.4
Sopen01g001120 Solanum pennellii HOM05D005922 ORTHO05D006934 1.2e-44 183.3 112 71.4
CiPaw.06G059000 Carya illinoinensis HOM05D005922 ORTHO05D006934 2.6e-44 182.2 112 72.3
Eucgr.B02658 Eucalyptus grandis HOM05D005922 ORTHO05D006934 2.6e-44 182.2 112 71.4
Ca_11580_v3 Cicer arietinum L. HOM05D005922 ORTHO05D006934 4.4e-44 181.4 112 71.4
QL03p038994 Quercus lobata HOM05D005922 ORTHO05D006934 4.4e-44 181.4 112 71.4
Ciclev10015473m.g Citrus clementina HOM05D005922 ORTHO05D006934 5.8e-44 181.0 112 73.2
Lj4g0028223 Lotus japonicus HOM05D005922 ORTHO05D006934 5.8e-44 181.0 112 70.5
Migut.L00620 Erythranthe guttata HOM05D005922 ORTHO05D006934 9.9e-44 180.3 112 72.3
MD16G1013700 Malus domestica HOM05D005922 ORTHO05D006934 9.9e-44 180.3 112 70.5
MSTRG.418 Avicennia marina HOM05D005922 ORTHO05D006934 1.3e-43 179.9 112 69.6
Dinv14365 Davidia involucrata HOM05D001297 ORTHO05D001135 1.3e-43 179.9 113 73.5
Phvul.002G181600 Phaseolus vulgaris HOM05D005922 ORTHO05D006934 1.3e-43 179.9 112 68.8
Nn4g24501 Nelumbo nucifera HOM05D005922 ORTHO05D006934 1.7e-43 179.5 112 69.6
Potri.008G139000 Populus trichocarpa HOM05D005922 ORTHO05D006934 1.7e-43 179.5 112 72.3
Lj3A860T49 Lonicera japonica HOM05D005922 ORTHO05D006934 2.2e-43 179.1 112 71.4
FAN17G1819 Fragaria x ananassa HOM05D005922 ORTHO05D006934 4.9e-43 177.9 112 69.6
RcHm_v2.0_Chr4g0442081 Rosa chinensis HOM05D005922 ORTHO05D006934 4.9e-43 177.9 112 68.8
arahy.Tifrunner.gnm1.ann1.DV72QU Arachis hypogaea HOM05D005922 ORTHO05D006934 6.4e-43 177.6 112 68.8
FAN07G1633 Fragaria x ananassa HOM05D005922 ORTHO05D006934 6.4e-43 177.6 112 69.6
Lsat_1_v5_gn_4_23861 Lactuca sativa HOM05D005922 ORTHO05D006934 6.4e-43 177.6 112 68.8
PSO017G1338 Papaver somniferum HOM05D005922 ORTHO05D006934 6.4e-43 177.6 112 68.8
PSO478G3575 Papaver somniferum HOM05D005922 ORTHO05D006934 6.4e-43 177.6 112 68.8
DCAR_026820 Daucus carota HOM05D005922 ORTHO05D006934 1.1e-42 176.8 112 71.4
Gohir.D04G188200 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.1e-42 176.8 112 68.8
ATR0598G299 Amborella trichopoda HOM05D005922 ORTHO05D006934 1.4e-42 176.4 112 68.8
FvH4_4g33040 Fragaria vesca HOM05D005922 ORTHO05D006934 1.4e-42 176.4 112 68.8
FAN12G4156 Fragaria x ananassa HOM05D005922 ORTHO05D006934 1.4e-42 176.4 112 68.8
BcaB02g11286 Brassica carinata HOM05D005922 ORTHO05D006934 2.4e-42 175.6 117 75.2
Sc10g0003730 Simmondsia chinensis HOM05D005922 ORTHO05D006934 4.2e-42 174.9 112 67.0
FAN22G1644 Fragaria x ananassa HOM05D005922 ORTHO05D006934 5.4e-42 174.5 113 69.0
HanXRQChr17g0566161 Helianthus annuus HOM05D005922 ORTHO05D006934 5.4e-42 174.5 112 68.8
ECA234G0994 Erigeron canadensis HOM05D005922 ORTHO05D006934 7.1e-42 174.1 112 67.9
Rhsim09G0086000 Rhododendron simsii HOM05D005922 ORTHO05D006934 7.1e-42 174.1 112 69.6
EL10Ac6g14554 Beta vulgaris HOM05D005922 ORTHO05D006934 9.3e-42 173.7 112 67.0
Sabra08G0105600 Salix brachista HOM05D005922 ORTHO05D006934 1.2e-41 173.3 112 69.6
Sed0026869 Sechium edule HOM05D005922 ORTHO05D006934 1.2e-41 173.3 112 69.6
Gorai.012G183700 Gossypium raimondii HOM05D005922 ORTHO05D006934 1.6e-41 172.9 112 67.9
AUR62007770 Chenopodium quinoa HOM05D005922 ORTHO05D006934 3.5e-41 171.8 112 65.2
TWI74G0639 Tripterygium wilfordii HOM05D005922 ORTHO05D006934 3.5e-41 171.8 112 67.9
AUR62002964 Chenopodium quinoa HOM05D005922 ORTHO05D006934 4.6e-41 171.4 112 64.3
CsaV3_5G013220 Cucumis sativus L. HOM05D005922 ORTHO05D006934 4.6e-41 171.4 112 67.0
Cc11_g05840 Coffea canephora HOM05D005922 ORTHO05D006934 6.0e-41 171.0 112 66.1
MELO3C020028.2 Cucumis melo HOM05D005922 ORTHO05D006934 6.0e-41 171.0 112 67.0
COL.COLO4_27589 Corchorus olitorius HOM05D005922 ORTHO05D006934 1.0e-40 170.2 130 60.0
CSS0049283 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.3e-40 169.9 113 69.0
Mapoly0075s0019 Marchantia polymorpha HOM05D005922 ORTHO05D006934 1.7e-40 169.5 112 67.0
Pp3c27_7680 Physcomitrium patens HOM05D005922 ORTHO05D006934 2.3e-40 169.1 112 65.2
unitig_748.g7591 Utricularia gibba HOM05D005922 ORTHO05D006934 1.5e-39 166.4 135 56.3
Os03g0238700 Oryza sativa ssp. japonica HOM05D005922 ORTHO05D006934 2.5e-39 165.6 112 59.8
SGA_v2.0_scaffold57G20105 Striga asiatica HOM05D005922 ORTHO05D006934 4.3e-39 164.9 117 64.1
Gohir.A04G143900 Gossypium hirsutum HOM05D005922 ORTHO05D006934 1.6e-38 162.9 134 56.7
Nitab4.5_0001935g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 1.6e-38 162.9 158 51.3
AT1G68080 Arabidopsis thaliana HOM05D005922 ORTHO05D006934 3.6e-38 161.8 113 69.0
Atru.chr11.736 Acer truncatum HOM05D005922 ORTHO05D006934 8.1e-38 160.6 100 73.0
Cfa015069 Carpinus fangiana HOM05D005922 ORTHO05D006934 8.1e-38 160.6 100 71.0
PGR102G1589 Punica granatum HOM05D005922 ORTHO05D006934 1.8e-37 159.5 127 56.7
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 1.2e-36 156.8 106 61.3
AagrBONN_evm.TU.Sc2ySwM_117.2043 Anthoceros agrestis HOM05D005922 ORTHO05D006934 2.0e-36 156.0 112 63.4
Hund05787 Selenicereus undatus HOM05D005922 ORTHO05D006934 3.4e-36 155.2 153 48.4
VMungo0251G3333 Vigna mungo HOM05D005922 ORTHO05D006934 4.4e-36 154.8 100 67.0
Nitab4.5_0000521g0110 Nicotiana tabacum HOM05D005922 ORTHO05D006934 9.9e-36 153.7 181 44.8
MBI19_g25220_MAGBIO Magnolia biondii HOM05D005922 ORTHO05D006934 3.8e-35 151.8 112 61.6
Nitab4.5_0001294g0040 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.8e-35 151.8 101 66.3
Prupe.1G337400 Prunus persica HOM05D005922 ORTHO05D006934 1.1e-34 150.2 112 61.6
Cpa.g.sc2.132 Carica papaya HOM05D005922 ORTHO05D006934 3.5e-33 145.2 113 62.8
Duzib248G0719 Durio zibethinus HOM05D005922 ORTHO05D006934 6.0e-33 144.4 112 60.7
SHI04278 Sapria himalayana HOM05D005922 ORTHO05D006934 7.9e-33 144.1 112 59.8
arahy.Tifrunner.gnm1.ann1.05ZMZX Arachis hypogaea HOM05D005922 ORTHO05D006934 3.0e-32 142.1 93 64.5
ClCG11G001170 Citrullus lanatus HOM05D005922 ORTHO05D006934 8.7e-32 140.6 112 58.9
CSS0037760 Camellia sinensis var. sinensis HOM05D005922 ORTHO05D006934 1.1e-26 123.6 112 55.4
Glyma.05G138500 Glycine max HOM05D005922 ORTHO05D006934 1.9e-26 122.9 112 55.4
CDE05G0039 Ceratophyllum demersum HOM05D005922 ORTHO05D006934 1.0e-24 117.1 112 50.9
CARHR060740 Cardamine hirsuta HOM05D005922 ORTHO05D006934 5.6e-23 111.3 61 78.7
Cre12.g486551 Chlamydomonas reinhardtii HOM05D005922 ORTHO05D006934 2.1e-22 109.4 107 47.7
SEGI_26303 Sequoiadendron giganteum HOM05D005922 ORTHO05D006934 2.1e-22 109.4 69 69.6
Nitab4.5_0001294g0050 Nicotiana tabacum HOM05D005922 ORTHO05D006934 3.4e-20 102.1 68 66.2
arahy.Tifrunner.gnm1.ann1.F0VD4J Arachis hypogaea HOM05D005922 ORTHO05D006934 4.9e-19 98.2 61 67.2
HPP92_016714 Vanilla planifolia HOM05D005922 ORTHO05D006934 6.5e-19 97.8 64 62.5
SalBow7G4797 Salvia bowleyana HOM05D005922 ORTHO05D006934 7.1e-18 94.4 62 62.9
CANSAT78G1412 Cannabis sativa HOM05D005922 ORTHO05D006934 1.6e-17 93.2 63 61.9
Oeu034664.1 Olea europaea HOM05D005922 ORTHO05D006934 2.7e-17 92.4 50 80.0
Ah.03g138110 Amaranthus hybridus HOM05D005922 ORTHO05D006934 2.3e-16 89.4 62 56.5
Thecc.02G304700 Theobroma cacao HOM05D005922 ORTHO05D006934 7.4e-15 84.3 58 58.6
arahy.Tifrunner.gnm1.ann1.62WV2A Arachis hypogaea HOM05D005922 ORTHO05D006934 4.8e-14 81.6 100 40.0
arahy.Tifrunner.gnm1.ann1.QG6U7W Arachis hypogaea HOM05D005922 ORTHO05D006934 4.8e-14 81.6 100 40.0
arahy.Tifrunner.gnm1.ann1.P482X0 Arachis hypogaea HOM05D005922 ORTHO05D006934 6.3e-14 81.3 50 68.0
arahy.Tifrunner.gnm1.ann1.10JCRR Arachis hypogaea HOM05D000690 ORTHO05D006934 8.2e-14 80.9 55 60.0
arahy.Tifrunner.gnm1.ann1.39MP9Z Arachis hypogaea HOM05D002181 ORTHO05D003287 1.1e-13 80.5 60 56.7
PRCOL_00005504 Prasinoderma coloniale HOM05D005922 ORTHO05D006934 2.4e-13 79.3 136 36.0
arahy.Tifrunner.gnm1.ann1.XTWJ7M Arachis hypogaea HOM05D002181 ORTHO05D006934 2.6e-12 75.9 57 56.1
arahy.Tifrunner.gnm1.ann1.QNE0FJ Arachis hypogaea HOM05D002181 ORTHO05D003287 1.1e-10 70.5 49 59.2
arahy.Tifrunner.gnm1.ann1.043Q1E Arachis hypogaea HOM05D005922 ORTHO05D006934 2.5e-10 69.3 49 59.2
Peaxi162Scf01111g00310 Petunia axillaris HOM05D005922 ORTHO05D006934 4.3e-07 58.5 78 39.7


User provided reference genes

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