Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g20715 Brassica carinata HOM05D003852 ORTHO05D003095 8.8e-113 410.2 196 100.0
BraA01t03616Z Brassica rapa HOM05D003852 ORTHO05D003095 1.3e-100 369.8 197 91.9
A01p35350 Brassica napus HOM05D003852 ORTHO05D003095 1.1e-99 366.7 197 91.4
BcaC09g48880 Brassica carinata HOM05D003852 ORTHO05D003095 7.2e-99 364.0 197 90.4
C01p44860 Brassica napus HOM05D003852 ORTHO05D003095 7.2e-99 364.0 197 90.4
BolC1t04453H Brassica oleracea HOM05D003852 ORTHO05D003095 7.2e-99 364.0 197 90.4
BcaB04g19031 Brassica carinata HOM05D003852 ORTHO05D003095 5.4e-94 347.8 197 85.3
BcaC01g03641 Brassica carinata HOM05D003852 ORTHO05D003095 9.1e-94 347.1 197 85.3
C03p50200 Brassica napus HOM05D003852 ORTHO05D003095 1.6e-93 346.3 197 84.8
BolC3t17312H Brassica oleracea HOM05D003852 ORTHO05D003095 1.6e-93 346.3 197 84.8
A03p41110 Brassica napus HOM05D003852 ORTHO05D003095 2.7e-93 345.5 197 85.3
BraA03t13268Z Brassica rapa HOM05D003852 ORTHO05D003095 2.7e-93 345.5 197 85.3
Sp3g17330 Schrenkiella parvula HOM05D003852 ORTHO05D003095 4.2e-91 338.2 197 81.7
AL5G46070 Arabidopsis lyrata HOM05D003852 ORTHO05D003095 8.0e-90 334.0 197 81.7
Thhalv10020524m.g Eutrema salsugineum HOM05D003852 ORTHO05D003095 8.0e-90 334.0 197 83.2
Aa31LG10G17050 Aethionema arabicum HOM05D003852 ORTHO05D003095 3.4e-88 328.6 197 79.2
AT3G63220 Arabidopsis thaliana HOM05D003852 ORTHO05D003095 3.4e-88 328.6 197 79.7
BcaC05g28508 Brassica carinata HOM05D003852 ORTHO05D003095 2.2e-87 325.9 199 81.9
BolC5t33311H Brassica oleracea HOM05D003852 ORTHO05D003095 2.2e-87 325.9 199 81.9
C05p45920 Brassica napus HOM05D003852 ORTHO05D003095 2.8e-87 325.5 199 81.4
CARHR291720 Cardamine hirsuta HOM05D003852 ORTHO05D003095 4.9e-87 324.7 197 79.7
Carub.0003s2849 Capsella rubella HOM05D003852 ORTHO05D003095 1.1e-86 323.6 197 78.7
Duzib138G1096 Durio zibethinus HOM05D003852 ORTHO05D003095 3.6e-74 282.0 197 67.0
Duzib133G1135 Durio zibethinus HOM05D003852 ORTHO05D003095 1.4e-73 280.0 197 69.0
Thecc.01G275200 Theobroma cacao HOM05D003852 ORTHO05D003095 1.4e-73 280.0 197 68.0
Gohir.A08G065300 Gossypium hirsutum HOM05D003852 ORTHO05D003095 4.0e-73 278.5 197 68.0
THA.LOC104823039 Tarenaya hassleriana HOM05D003852 ORTHO05D003095 8.9e-73 277.3 197 68.0
Gorai.004G078200 Gossypium raimondii HOM05D003852 ORTHO05D003095 1.5e-72 276.6 197 67.0
Gohir.D08G073800 Gossypium hirsutum HOM05D003852 ORTHO05D003095 2.6e-72 275.8 197 67.0
Gohir.D11G129500 Gossypium hirsutum HOM05D003852 ORTHO05D003095 2.6e-72 275.8 197 66.0
Gorai.007G138500 Gossypium raimondii HOM05D003852 ORTHO05D003095 2.6e-72 275.8 197 66.0
Potri.002G050600 Populus trichocarpa HOM05D003852 ORTHO05D003095 7.5e-72 274.2 197 65.5
Potri.005G211700 Populus trichocarpa HOM05D003852 ORTHO05D003095 7.5e-72 274.2 197 65.5
Ciclev10020951m.g Citrus clementina HOM05D003852 ORTHO05D003095 9.8e-72 273.9 197 65.5
Nitab4.5_0000252g0020 Nicotiana tabacum HOM05D003852 ORTHO05D003095 1.3e-71 273.5 196 67.3
Nitab4.5_0006971g0030 Nicotiana tabacum HOM05D003852 ORTHO05D003095 1.3e-71 273.5 197 67.5
Manes.05G079600 Manihot esculenta HOM05D003852 ORTHO05D003095 1.7e-71 273.1 197 66.0
Manes.01G205800 Manihot esculenta HOM05D003852 ORTHO05D003095 2.9e-71 272.3 197 64.5
Cc01_g19260 Coffea canephora HOM05D003852 ORTHO05D003095 4.9e-71 271.6 199 66.3
Gohir.A11G124300 Gossypium hirsutum HOM05D003852 ORTHO05D003095 6.4e-71 271.2 197 65.5
CAN.G367.4 Capsicum annuum HOM05D003852 ORTHO05D003095 1.1e-70 270.4 197 67.5
Haze_04684 Corylus avellana HOM05D003852 ORTHO05D003095 1.1e-70 270.4 197 64.0
Oeu023611.1 Olea europaea HOM05D003852 ORTHO05D003095 1.4e-70 270.0 197 63.5
Oeu023612.1 Olea europaea HOM05D003852 ORTHO05D003095 1.4e-70 270.0 197 63.5
PGR119G0242 Punica granatum HOM05D003852 ORTHO05D003095 1.4e-70 270.0 197 64.0
Sabra02G0041300 Salix brachista HOM05D003852 ORTHO05D003095 1.9e-70 269.6 197 65.0
Cfa006166 Carpinus fangiana HOM05D003852 ORTHO05D003095 2.4e-70 269.2 197 64.5
Oeu017375.1 Olea europaea HOM05D003852 ORTHO05D003095 4.1e-70 268.5 197 64.5
Prupe.8G238100 Prunus persica HOM05D003852 ORTHO05D003095 4.1e-70 268.5 197 66.0
Actinidia24909 Actinidia chinensis HOM05D003852 ORTHO05D003095 5.4e-70 268.1 197 65.5
Lj1C49T1 Lonicera japonica HOM05D003852 ORTHO05D003095 7.0e-70 267.7 197 65.0
PGSC0003DMG400019326 Solanum tuberosum HOM05D003852 ORTHO05D003095 1.6e-69 266.5 197 66.5
Solyc09g065400.2 Solanum lycopersicum HOM05D003852 ORTHO05D003095 2.1e-69 266.2 197 66.5
QL12p021016 Quercus lobata HOM05D003852 ORTHO05D003095 2.7e-69 265.8 196 64.8
TWI18G0894 Tripterygium wilfordii HOM05D003852 ORTHO05D003095 4.6e-69 265.0 197 61.9
Sopen09g027170 Solanum pennellii HOM05D003852 ORTHO05D003095 7.8e-69 264.2 197 66.0
AUR62028597 Chenopodium quinoa HOM05D003852 ORTHO05D003095 1.0e-68 263.8 197 65.0
Lj1g0013511 Lotus japonicus HOM05D003852 ORTHO05D003095 1.0e-68 263.8 197 63.5
VMungo1383G1271 Vigna mungo HOM05D003852 ORTHO05D003095 1.0e-68 263.8 197 64.5
Glyma.03G156000 Glycine max HOM05D003852 ORTHO05D003095 6.6e-68 261.2 197 64.0
Phvul.001G153400 Phaseolus vulgaris HOM05D003852 ORTHO05D003095 6.6e-68 261.2 197 64.5
arahy.Tifrunner.gnm1.ann1.0NU1GV Arachis hypogaea HOM05D003852 ORTHO05D003095 8.6e-68 260.8 197 63.5
CiPaw.07G089600 Carya illinoinensis HOM05D003852 ORTHO05D003095 8.6e-68 260.8 197 62.4
Dinv34776 Davidia involucrata HOM05D003852 ORTHO05D003095 8.6e-68 260.8 197 63.5
TWI75G1272 Tripterygium wilfordii HOM05D003852 ORTHO05D003095 8.6e-68 260.8 197 61.4
MSTRG.18249 Avicennia marina HOM05D003852 ORTHO05D003095 1.5e-67 260.0 197 61.9
TAR633G1597 Trochodendron aralioides HOM05D003852 ORTHO05D003095 1.5e-67 260.0 198 64.1
Glyma.10G028000 Glycine max HOM05D003852 ORTHO05D003095 2.5e-67 259.2 197 63.5
Hma1.2p1_0822F.1_g224280 Hydrangea macrophylla HOM05D003852 ORTHO05D003095 2.5e-67 259.2 194 64.4
CsaV3_6G037180 Cucumis sativus L. HOM05D003852 ORTHO05D003095 4.3e-67 258.5 197 61.4
CANSAT25G3465 Cannabis sativa HOM05D003852 ORTHO05D003095 7.3e-67 257.7 197 62.9
Glyma.19G158300 Glycine max HOM05D003852 ORTHO05D003095 7.3e-67 257.7 197 62.9
TAR362G0751 Trochodendron aralioides HOM05D003852 ORTHO05D003095 7.3e-67 257.7 198 64.1
Glyma.02G146000 Glycine max HOM05D003852 ORTHO05D003095 9.5e-67 257.3 197 63.5
PSO210G2391 Papaver somniferum HOM05D003852 ORTHO05D003095 9.5e-67 257.3 198 64.6
ClCG07G000360 Citrullus lanatus HOM05D003852 ORTHO05D003095 1.6e-66 256.5 197 60.9
Atru.chr5.1475 Acer truncatum HOM05D003852 ORTHO05D003095 2.1e-66 256.1 198 60.1
PSO761G0265 Papaver somniferum HOM05D003852 ORTHO05D003095 2.1e-66 256.1 198 64.6
Ah.02g110860 Amaranthus hybridus HOM05D003852 ORTHO05D003095 2.8e-66 255.8 197 62.4
MELO3C014395.2 Cucumis melo HOM05D003852 ORTHO05D003095 2.8e-66 255.8 197 61.4
Migut.D00321 Erythranthe guttata HOM05D003852 ORTHO05D003095 2.8e-66 255.8 198 63.6
FAN20G0961 Fragaria x ananassa HOM05D003852 ORTHO05D003095 2.8e-66 255.8 197 62.9
RcHm_v2.0_Chr6g0290531 Rosa chinensis HOM05D003852 ORTHO05D003095 2.8e-66 255.8 197 62.9
FAN24G2523 Fragaria x ananassa HOM05D003852 ORTHO05D003095 3.6e-66 255.4 197 62.4
FAN27G2726 Fragaria x ananassa HOM05D003852 ORTHO05D003095 3.6e-66 255.4 197 62.4
Sed0018313 Sechium edule HOM05D003852 ORTHO05D003095 4.7e-66 255.0 197 60.4
Ah.11g050460 Amaranthus hybridus HOM05D003852 ORTHO05D003095 1.1e-65 253.8 197 62.4
Oeu025742.1 Olea europaea HOM05D003852 ORTHO05D003095 1.1e-65 253.8 197 60.4
AUR62032325 Chenopodium quinoa HOM05D003852 ORTHO05D003095 1.4e-65 253.4 190 64.2
CSS0008120 Camellia sinensis var. sinensis HOM05D003852 ORTHO05D003095 1.8e-65 253.1 198 62.6
CSS0030773 Camellia sinensis var. sinensis HOM05D003852 ORTHO05D003095 1.8e-65 253.1 198 62.6
Lsat_1_v5_gn_8_56781 Lactuca sativa HOM05D003852 ORTHO05D003095 1.8e-65 253.1 197 64.0
FvH4_2g23221 Fragaria vesca HOM05D003852 ORTHO05D003095 3.1e-65 252.3 193 62.2
Lalb_Chr25g0290201 Lupinus albus HOM05D003852 ORTHO05D003095 5.2e-65 251.5 196 61.2
Aqoxy5G00444 Aquilegia oxysepala HOM05D003852 ORTHO05D003095 6.8e-65 251.1 197 61.9
unitig_749.g13739 Utricularia gibba HOM05D003852 ORTHO05D003095 6.8e-65 251.1 194 60.8
MSTRG.21546 Avicennia marina HOM05D003852 ORTHO05D003095 1.2e-64 250.4 197 60.9
Psat3g063040 Pisum sativum HOM05D003852 ORTHO05D003095 1.2e-64 250.4 197 60.4
GSVIVG01001176001 Vitis vinifera HOM05D003852 ORTHO05D003095 1.2e-64 250.4 177 64.4
Medtr7g095220 Medicago truncatula HOM05D003852 ORTHO05D003095 2.0e-64 249.6 197 60.4
Eucgr.L00800 Eucalyptus grandis HOM05D003852 ORTHO05D003095 2.6e-64 249.2 198 61.6
Eucgr.H01462 Eucalyptus grandis HOM05D003852 ORTHO05D003095 3.4e-64 248.8 198 61.6
Lsat_1_v5_gn_9_6280 Lactuca sativa HOM05D003852 ORTHO05D003095 3.4e-64 248.8 197 61.4
CAN.G1492.12 Capsicum annuum HOM05D003852 ORTHO05D003095 4.4e-64 248.4 198 61.1
Ca_08615_v3 Cicer arietinum L. HOM05D003852 ORTHO05D003095 5.8e-64 248.1 202 59.4
Ca_08623_v3 Cicer arietinum L. HOM05D003852 ORTHO05D003095 5.8e-64 248.1 202 59.4
HanXRQChr10g0282411 Helianthus annuus HOM05D003852 ORTHO05D003095 9.9e-64 247.3 197 60.4
vmacro02592 Vaccinium macrocarpon HOM05D003852 ORTHO05D003095 1.3e-63 246.9 196 61.2
Nitab4.5_0005696g0010 Nicotiana tabacum HOM05D003852 ORTHO05D003095 4.9e-63 245.0 198 60.6
ECA236G4763 Erigeron canadensis HOM05D003852 ORTHO05D003095 6.4e-63 244.6 197 59.9
Rhsim13G0026700 Rhododendron simsii HOM05D003852 ORTHO05D003095 8.3e-63 244.2 198 60.1
Sopen06g003470 Solanum pennellii HOM05D003852 ORTHO05D003095 1.1e-62 243.8 198 60.6
SGA_v2.0_scaffold1G00503 Striga asiatica HOM05D003852 ORTHO05D003095 1.9e-62 243.0 202 59.9
ECA247G0934 Erigeron canadensis HOM05D003852 ORTHO05D003095 2.4e-62 242.7 197 60.4
Nn1g02365 Nelumbo nucifera HOM05D003852 ORTHO05D003095 2.4e-62 242.7 198 60.6
PGSC0003DMG400005330 Solanum tuberosum HOM05D003852 ORTHO05D003095 2.4e-62 242.7 198 60.6
Nitab4.5_0000627g0030 Nicotiana tabacum HOM05D003852 ORTHO05D003095 4.1e-62 241.9 198 60.1
Solyc06g008690.1 Solanum lycopersicum HOM05D003852 ORTHO05D003095 9.2e-62 240.7 198 60.1
Nn6g34111 Nelumbo nucifera HOM05D003852 ORTHO05D003095 1.6e-61 240.0 198 60.6
Hund02834 Selenicereus undatus HOM05D003852 ORTHO05D003095 3.5e-61 238.8 189 62.4
Peaxi162Scf01158g00028 Petunia axillaris HOM05D003852 ORTHO05D003095 4.6e-61 238.4 182 65.4
HanXRQChr15g0466841 Helianthus annuus HOM05D003852 ORTHO05D003095 1.0e-60 237.3 197 58.4
Aqoxy2G03420 Aquilegia oxysepala HOM05D003852 ORTHO05D003095 8.6e-60 234.2 197 59.9
Sc17g0001310 Simmondsia chinensis HOM05D003852 ORTHO05D003095 1.9e-59 233.0 196 58.7
MD03G1261800 Malus domestica HOM05D003852 ORTHO05D003095 2.5e-59 232.6 197 56.3
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 1.2e-58 230.3 167 66.5
MD11G1282500 Malus domestica HOM05D003852 ORTHO05D003095 1.4e-57 226.9 197 56.3
TPR.G24333 Trifolium pratense HOM05D003852 ORTHO05D003095 1.1e-54 217.2 201 53.2
Zm00001eb224370 Zea mays HOM05D003852 ORTHO05D003095 3.9e-52 208.8 198 54.5
Os10g0388200 Oryza sativa ssp. japonica HOM05D003852 ORTHO05D003095 6.6e-52 208.0 198 54.5
Hund09505 Selenicereus undatus HOM05D003852 ORTHO05D003095 1.9e-51 206.5 173 60.1
CsaV3_7G027930 Cucumis sativus L. HOM05D003852 ORTHO05D003095 1.1e-49 200.7 199 51.3
MELO3C015811.2 Cucumis melo HOM05D003852 ORTHO05D003095 1.8e-49 199.9 199 51.3
HPP92_017652 Vanilla planifolia HOM05D003852 ORTHO05D003095 3.1e-49 199.1 203 50.2
Lj2g0027087 Lotus japonicus HOM05D003852 ORTHO05D003095 4.0e-49 198.7 189 52.9
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 1.7e-47 193.4 169 55.6
ClCG09G007240 Citrullus lanatus HOM05D003852 ORTHO05D003095 1.7e-47 193.4 199 49.2
SEGI_33410 Sequoiadendron giganteum HOM05D003852 ORTHO05D003095 2.9e-47 192.6 198 47.5
Sed0008186 Sechium edule HOM05D003852 ORTHO05D003095 7.8e-45 184.5 198 46.5
Lj2g0026136 Lotus japonicus HOM05D003852 ORTHO05D003095 2.8e-42 176.0 196 48.5
Actinidia00780 Actinidia chinensis HOM05D003852 ORTHO05D003095 7.1e-38 161.4 112 66.1
CDE06G1700 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 1.8e-36 156.8 142 52.8
ATR0665G485 Amborella trichopoda HOM05D003852 ORTHO05D003095 2.5e-35 152.9 201 41.3
ClCG09G007230 Citrullus lanatus HOM05D003852 ORTHO05D003095 4.8e-34 148.7 200 42.5
Mapoly0101s0001 Marchantia polymorpha HOM05D003852 ORTHO05D003095 3.1e-33 146.0 197 39.1
Sed0026373 Sechium edule HOM05D003852 ORTHO05D003095 2.0e-32 143.3 200 40.0
CsaV3_7G027940 Cucumis sativus L. HOM05D003852 ORTHO05D003095 1.7e-31 140.2 200 40.0
MELO3C015813.2 Cucumis melo HOM05D003852 ORTHO05D003095 1.4e-30 137.1 200 40.0
Sed0026820 Sechium edule HOM05D003852 ORTHO05D003095 4.6e-29 132.1 200 37.0
Sed0021836 Sechium edule HOM05D003852 ORTHO05D003095 1.1e-27 127.5 200 38.5
Sed0000968 Sechium edule HOM05D003852 ORTHO05D003095 7.4e-27 124.8 201 39.3
SMO340G0094 Selaginella moellendorffii HOM05D003852 ORTHO05D003095 1.8e-25 120.2 199 36.2
Sed0012001 Sechium edule HOM05D003852 ORTHO05D003095 3.8e-23 112.5 213 35.2
AagrBONN_evm.TU.Sc2ySwM_344.2886 Anthoceros agrestis HOM05D003852 ORTHO05D003095 4.2e-22 109.0 107 48.6
ATR0665G556 Amborella trichopoda HOM05D003852 ORTHO05D003095 2.7e-21 106.3 201 35.3
Pp3c11_19400 Physcomitrium patens HOM05D003852 ORTHO05D003095 3.5e-21 105.9 200 35.0
Sc05g0001450 Simmondsia chinensis HOM05D003852 ORTHO05D003095 3.1e-17 92.8 84 53.6
TAR374G0128 Trochodendron aralioides HOM05D003852 ORTHO05D003095 7.2e-14 81.6 87 43.7
Psat6g243720 Pisum sativum HOM05D003852 ORTHO05D003095 1.6e-13 80.5 88 43.2
DCAR_002719 Daucus carota HOM05D000489 ORTHO05D000372 3.9e-12 75.9 52 65.4
COL.COLO4_32975 Corchorus olitorius HOM05D000667 ORTHO05D003095 8.2e-10 68.2 222 27.9
SEGI_10708 Sequoiadendron giganteum HOM05D000667 ORTHO05D003095 1.4e-09 67.4 221 24.0
PGR004G1039 Punica granatum HOM05D000667 ORTHO05D003095 1.2e-08 64.3 222 26.6
Duzib177G0493 Durio zibethinus HOM05D000667 ORTHO05D003095 2.0e-08 63.5 221 25.8
Thecc.05G247000 Theobroma cacao HOM05D000667 ORTHO05D003095 2.0e-08 63.5 222 26.6
Eucgr.H04148 Eucalyptus grandis HOM05D000667 ORTHO05D003095 2.6e-08 63.2 224 25.4
MD16G1131800 Malus domestica HOM05D000667 ORTHO05D003095 7.7e-08 61.6 224 25.9
Duzib106G1028 Durio zibethinus HOM05D000667 ORTHO05D003095 5.0e-07 58.9 225 24.0
SEGI_21713 Sequoiadendron giganteum HOM05D001337 ORTHO05D001281 5.0e-07 58.9 164 26.8
ATR0796G263 Amborella trichopoda HOM05D007183 ORTHO05D003095 6.5e-07 58.5 229 25.3
Gohir.A13G165200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 8.5e-07 58.2 222 25.7
Gohir.D13G168200 Gossypium hirsutum HOM05D000667 ORTHO05D003095 1.9e-06 57.0 222 25.7
Gorai.013G193900 Gossypium raimondii HOM05D000667 ORTHO05D003095 1.9e-06 57.0 222 25.7
SEGI_25494 Sequoiadendron giganteum HOM05D001337 ORTHO05D001281 1.9e-06 57.0 162 23.5
Mapoly0057s0100 Marchantia polymorpha HOM05D000667 ORTHO05D003095 5.5e-06 55.5 223 25.6
CsaV3_6G032320 Cucumis sativus L. HOM05D000667 ORTHO05D003843 7.2e-06 55.1 159 30.8
Medtr0105s0020 Medicago truncatula HOM05D000614 ORTHO05D000463 9.4e-06 54.7 210 22.4
Medtr0105s0170 Medicago truncatula HOM05D000614 ORTHO05D000463 9.4e-06 54.7 210 22.4


User provided reference genes

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