Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 2.2e-168 595.5 295 100.0
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 7.5e-15 85.5 45 86.7
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 6.3e-14 82.4 45 82.2
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 6.3e-14 82.4 45 84.4
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 8.3e-14 82.0 45 82.2
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 8.3e-14 82.0 45 82.2
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.1e-13 81.6 45 82.2
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.1e-13 81.6 45 82.2
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 1.1e-13 81.6 45 82.2
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 9.1e-13 78.6 45 77.8
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 4.5e-12 76.3 45 75.6
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 2.9e-11 73.6 45 71.1
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 2.9e-11 73.6 45 68.9
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 2.9e-11 73.6 45 71.1
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 2.9e-11 73.6 45 71.1
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 2.9e-11 73.6 45 73.3
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 6.5e-11 72.4 45 68.9
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 8.5e-11 72.0 45 68.9
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.1e-10 71.6 45 71.1
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.5e-10 71.2 45 68.9
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.9e-10 70.9 45 68.9
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 1.9e-10 70.9 47 63.8
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 2.5e-10 70.5 45 68.9
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 2.5e-10 70.5 45 68.9
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 2.5e-10 70.5 45 66.7
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 2.5e-10 70.5 45 68.9
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.5e-10 70.5 45 66.7
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 3.2e-10 70.1 45 68.9
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 3.2e-10 70.1 45 68.9
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 3.2e-10 70.1 45 66.7
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 4.2e-10 69.7 45 66.7
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 5.5e-10 69.3 45 64.4
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 7.2e-10 68.9 45 66.7
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 7.2e-10 68.9 66 48.5
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 7.2e-10 68.9 45 66.7
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 9.4e-10 68.6 45 64.4
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.2e-09 68.2 43 67.4
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 1.2e-09 68.2 45 64.4
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.2e-09 68.2 45 64.4
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.6e-09 67.8 47 61.7
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 1.6e-09 67.8 45 64.4
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.6e-09 67.8 45 64.4
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 1.6e-09 67.8 45 64.4
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 2.1e-09 67.4 45 64.4
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 2.1e-09 67.4 45 64.4
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.1e-09 67.4 45 66.7
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.1e-09 67.4 45 66.7
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 2.1e-09 67.4 45 64.4
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 2.7e-09 67.0 45 62.2
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 2.7e-09 67.0 45 66.7
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 2.7e-09 67.0 47 59.6
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 2.7e-09 67.0 47 61.7
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 2.7e-09 67.0 45 64.4
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 3.6e-09 66.6 45 62.2
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 3.6e-09 66.6 45 64.4
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 3.6e-09 66.6 67 50.7
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 3.6e-09 66.6 45 64.4
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 4.7e-09 66.2 47 57.4
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 4.7e-09 66.2 45 62.2
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 4.7e-09 66.2 45 62.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 6.1e-09 65.9 45 60.0
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 6.1e-09 65.9 47 57.4
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 6.1e-09 65.9 45 62.2
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 6.1e-09 65.9 42 66.7
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 6.1e-09 65.9 45 62.2
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 8.0e-09 65.5 44 59.1
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 8.0e-09 65.5 42 66.7
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 8.0e-09 65.5 47 57.4
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 8.0e-09 65.5 47 57.4
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.0e-08 65.1 45 60.0
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.0e-08 65.1 47 55.3
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 1.0e-08 65.1 47 55.3
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 1.0e-08 65.1 47 55.3
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 1.0e-08 65.1 45 62.2
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.4e-08 64.7 47 55.3
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 1.4e-08 64.7 47 55.3
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.4e-08 64.7 45 60.0
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.4e-08 64.7 42 61.9
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.8e-08 64.3 45 60.0
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.8e-08 64.3 45 60.0
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.8e-08 64.3 45 60.0
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.8e-08 64.3 47 55.3
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 2.3e-08 63.9 45 60.0
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 2.3e-08 63.9 45 62.2
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.3e-08 63.9 45 62.2
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.3e-08 63.9 45 57.8
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 3.0e-08 63.5 45 60.0
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 3.0e-08 63.5 45 62.2
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 3.0e-08 63.5 58 53.4
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 3.0e-08 63.5 83 37.3
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 5.2e-08 62.8 45 55.6
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 6.8e-08 62.4 47 53.2
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 8.8e-08 62.0 47 55.3
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 8.8e-08 62.0 45 57.8
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 1.2e-07 61.6 45 55.6
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 1.2e-07 61.6 47 53.2
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.5e-07 61.2 41 65.9
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.5e-07 61.2 45 53.3
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 2.0e-07 60.8 83 38.6
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.6e-07 60.5 45 57.8
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.6e-07 60.5 45 55.6
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.6e-07 60.5 45 55.6
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 7.5e-07 58.9 45 51.1
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 1.7e-06 57.8 40 62.5
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 2.2e-06 57.4 50 54.0
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 4.8e-06 56.2 136 31.6


User provided reference genes

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