Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17611 Brassica carinata HOM05D000370 ORTHO05D014331 2.1e-110 402.5 225 100.0
A08p06420 Brassica napus HOM05D000370 ORTHO05D014331 7.8e-89 330.9 224 85.7
BraA08t32651Z Brassica rapa HOM05D000370 ORTHO05D014331 2.3e-88 329.3 224 85.3
BcaB04g17615 Brassica carinata HOM05D000370 ORTHO05D014331 5.8e-84 314.7 172 95.9
BcaC07g37305 Brassica carinata HOM05D000370 ORTHO05D014331 1.9e-82 309.7 224 77.7
C08p07400 Brassica napus HOM05D000370 ORTHO05D014331 1.9e-82 309.7 224 77.7
BolC8t47584H Brassica oleracea HOM05D000370 ORTHO05D014331 1.9e-82 309.7 224 77.7
CARHR035260 Cardamine hirsuta HOM05D000370 ORTHO05D014331 6.6e-56 221.5 205 62.0
AL1G51520 Arabidopsis lyrata HOM05D000370 ORTHO05D014331 1.3e-54 217.2 206 63.1
Sp1g32260 Schrenkiella parvula HOM05D000370 ORTHO05D014331 4.5e-52 208.8 228 57.0
AT1G43020 Arabidopsis thaliana HOM05D000370 ORTHO05D014331 8.4e-51 204.5 204 59.8
Carub.0001s3441 Capsella rubella HOM05D000370 ORTHO05D014331 1.4e-50 203.8 205 59.0
Thhalv10004335m.g Eutrema salsugineum HOM05D000370 ORTHO05D014331 3.9e-48 195.7 174 62.1
THA.LOC104813214 Tarenaya hassleriana HOM05D000370 ORTHO05D001335 1.0e-35 154.5 246 45.1
Aa31LG6G10020 Aethionema arabicum HOM05D000370 ORTHO05D014331 3.5e-33 146.0 276 45.3
GSVIVG01013459001 Vitis vinifera HOM05D000370 ORTHO05D001335 2.2e-11 73.6 223 29.6
Eucgr.F01953 Eucalyptus grandis HOM05D000370 ORTHO05D001335 2.9e-11 73.2 218 33.5
Thecc.08G097700 Theobroma cacao HOM05D000370 ORTHO05D001335 5.0e-11 72.4 195 36.9
Sp5g31780 Schrenkiella parvula HOM05D000370 ORTHO05D001335 8.5e-11 71.6 144 38.2
Aa31LG4G6710 Aethionema arabicum HOM05D000370 ORTHO05D001335 1.1e-10 71.2 150 38.7
BcaC08g47174 Brassica carinata HOM05D000370 ORTHO05D001335 1.1e-10 71.2 147 38.8
AT1G76620 Arabidopsis thaliana HOM05D000370 ORTHO05D001335 1.5e-10 70.9 137 40.1
Thhalv10007437m.g Eutrema salsugineum HOM05D000370 ORTHO05D001335 1.9e-10 70.5 183 33.9
C05p19770 Brassica napus HOM05D000370 ORTHO05D001335 3.2e-10 69.7 204 30.9
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 3.2e-10 69.7 204 30.9
Carub.0002s2352 Capsella rubella HOM05D000370 ORTHO05D001335 5.5e-10 68.9 135 38.5
BcaC05g26013 Brassica carinata HOM05D000370 ORTHO05D001335 7.2e-10 68.6 204 29.4
Carub.0001s2051 Capsella rubella HOM05D000370 ORTHO05D001335 7.2e-10 68.6 183 30.6
BcaC08g47228 Brassica carinata HOM05D000370 ORTHO05D001335 9.4e-10 68.2 149 37.6
C06p50870 Brassica napus HOM05D000370 ORTHO05D001335 9.4e-10 68.2 147 38.1
BolC6t40112H Brassica oleracea HOM05D000370 ORTHO05D001335 9.4e-10 68.2 149 37.6
CARHR021500 Cardamine hirsuta HOM05D000370 ORTHO05D001335 9.4e-10 68.2 184 32.1
AT1G21060 Arabidopsis thaliana HOM05D000370 ORTHO05D001335 1.2e-09 67.8 149 34.9
AL2G36760 Arabidopsis lyrata HOM05D000370 ORTHO05D001335 1.6e-09 67.4 138 39.1
A07p42290 Brassica napus HOM05D000370 ORTHO05D001335 1.6e-09 67.4 141 39.0
BraA07t31757Z Brassica rapa HOM05D000370 ORTHO05D001335 1.6e-09 67.4 141 39.0
BcaB07g32098 Brassica carinata HOM05D000370 ORTHO05D001335 6.1e-09 65.5 147 34.0
CARHR070180 Cardamine hirsuta HOM05D000370 ORTHO05D001335 6.1e-09 65.5 140 39.3
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 6.1e-09 65.5 213 29.1
THA.LOC104806041 Tarenaya hassleriana HOM05D000370 ORTHO05D001335 1.0e-08 64.7 157 33.8
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 1.4e-08 64.3 176 34.1
TWI36G0597 Tripterygium wilfordii HOM05D000370 ORTHO05D001335 1.4e-08 64.3 196 32.1
A06p17120 Brassica napus HOM05D000370 ORTHO05D001335 4.0e-08 62.8 204 29.9
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 4.0e-08 62.8 204 29.9
Prupe.5G001300 Prunus persica HOM05D000370 ORTHO05D001335 4.0e-08 62.8 149 40.3
Cfa014166 Carpinus fangiana HOM05D000370 ORTHO05D001335 5.2e-08 62.4 179 34.1
MSTRG.22068 Avicennia marina HOM05D000370 ORTHO05D001335 1.5e-07 60.8 179 31.3
ECA233G1728 Erigeron canadensis HOM05D000038 ORTHO05D000423 1.5e-07 60.8 161 36.6
Ciclev10000770m.g Citrus clementina HOM05D000370 ORTHO05D001335 3.3e-07 59.7 161 33.5
AL1G34100 Arabidopsis lyrata HOM05D000370 ORTHO05D001335 4.4e-07 59.3 146 34.2
BcaC01g03408 Brassica carinata HOM05D011690 ORTHO05D014098 4.4e-07 59.3 139 32.4
C03p52880 Brassica napus HOM05D011690 ORTHO05D014098 4.4e-07 59.3 139 32.4
QL02p016283 Quercus lobata HOM05D000370 ORTHO05D001335 4.4e-07 59.3 179 34.6
SGA_v2.0_scaffold161G37839 Striga asiatica HOM05D000370 ORTHO05D001335 4.4e-07 59.3 185 31.4
THA.LOC104813722 Tarenaya hassleriana HOM05D000370 ORTHO05D001335 4.4e-07 59.3 156 35.3
C08p13220 Brassica napus HOM05D011690 ORTHO05D014098 5.7e-07 58.9 139 32.4
BolC8t48952H Brassica oleracea HOM05D011690 ORTHO05D014098 5.7e-07 58.9 139 32.4
HanXRQChr07g0204291 Helianthus annuus HOM05D000370 ORTHO05D001335 5.7e-07 58.9 182 29.7
BcaC07g38530 Brassica carinata HOM05D011690 ORTHO05D014098 7.5e-07 58.5 134 33.6
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 7.5e-07 58.5 157 36.3
MD06G1001000 Malus domestica HOM05D000370 ORTHO05D001335 9.7e-07 58.2 167 35.3
Aa31LG7G5200 Aethionema arabicum HOM05D000370 ORTHO05D001335 1.3e-06 57.8 233 28.8
FAN13G1055 Fragaria x ananassa HOM05D000370 ORTHO05D001335 1.7e-06 57.4 167 32.3
HanXRQChr08g0217081 Helianthus annuus HOM05D000370 ORTHO05D001335 1.7e-06 57.4 154 31.8
RcHm_v2.0_Chr7g0217551 Rosa chinensis HOM05D000370 ORTHO05D001335 1.7e-06 57.4 174 33.9
CSS0009956 Camellia sinensis var. sinensis HOM05D000370 ORTHO05D001335 2.8e-06 56.6 175 30.9
Solyc04g082970.4 Solanum lycopersicum HOM05D000370 ORTHO05D001335 2.8e-06 56.6 204 28.4
CiPaw.07G130200 Carya illinoinensis HOM05D000370 ORTHO05D001335 3.7e-06 56.2 182 32.4
Dinv05516 Davidia involucrata HOM05D000370 ORTHO05D001335 3.7e-06 56.2 150 33.3
Atru.chr13.21 Acer truncatum HOM05D000370 ORTHO05D001335 4.8e-06 55.8 156 30.8
Migut.N03001 Erythranthe guttata HOM05D000370 ORTHO05D001335 4.8e-06 55.8 147 32.7
Nitab4.5_0003364g0070 Nicotiana tabacum HOM05D000370 ORTHO05D001335 4.8e-06 55.8 174 33.9
MSTRG.24890 Avicennia marina HOM05D000370 ORTHO05D001335 6.3e-06 55.5 189 30.7
Lsat_1_v5_gn_8_25520 Lactuca sativa HOM05D000370 ORTHO05D001335 6.3e-06 55.5 160 33.1
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 8.2e-06 55.1 42 64.3


User provided reference genes

Program Settings