Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 5.4e-93 344.4 180 100.0
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 9.6e-90 333.6 180 96.7
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 9.6e-90 333.6 180 96.7
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.6e-89 332.8 180 96.1
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 8.1e-89 330.5 180 95.6
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 8.1e-89 330.5 180 95.6
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 8.4e-86 320.5 183 91.8
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.6e-84 314.7 183 90.7
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 2.1e-76 289.3 184 83.7
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.9e-74 282.7 183 82.5
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 4.3e-74 281.6 181 83.4
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 1.4e-72 276.6 184 81.0
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.4e-72 276.6 178 83.1
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 1.8e-72 276.2 172 84.9
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.1e-72 275.4 177 82.5
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 5.3e-72 274.6 178 82.0
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 5.3e-72 274.6 177 80.8
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 1.5e-71 273.1 177 81.9
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 7.6e-71 270.8 178 82.0
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 2.9e-70 268.9 177 79.1
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.1e-69 266.9 175 80.6
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 1.4e-69 266.5 174 79.3
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 1.9e-69 266.2 182 76.4
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 3.2e-69 265.4 172 80.2
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 7.2e-69 264.2 177 78.0
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 7.2e-69 264.2 177 78.5
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.2e-68 263.5 156 87.8
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 1.6e-68 263.1 177 79.7
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 2.1e-68 262.7 177 76.3
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 2.7e-68 262.3 177 78.5
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.7e-68 262.3 174 76.4
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 3.6e-68 261.9 177 77.4
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 3.6e-68 261.9 177 78.0
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 6.1e-68 261.2 177 78.0
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 7.9e-68 260.8 174 76.4
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.0e-67 260.4 180 75.6
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.0e-67 258.8 180 75.0
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 3.9e-67 258.5 177 75.7
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.9e-67 258.5 180 75.0
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.9e-67 258.5 180 75.0
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 3.9e-67 258.5 174 76.4
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 5.1e-67 258.1 171 78.4
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.9e-66 256.1 177 77.4
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 1.9e-66 256.1 177 76.8
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 2.5e-66 255.8 175 76.0
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.3e-66 255.4 174 76.4
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.3e-66 255.4 174 76.4
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 4.3e-66 255.0 166 80.1
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 4.3e-66 255.0 180 72.8
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 7.4e-66 254.2 177 76.3
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 7.4e-66 254.2 177 76.3
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 9.7e-66 253.8 177 75.7
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 9.7e-66 253.8 174 74.7
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.3e-65 253.4 177 74.6
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.6e-65 253.1 174 73.6
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 2.2e-65 252.7 180 74.4
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 2.8e-65 252.3 177 73.4
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 3.7e-65 251.9 180 75.0
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.8e-65 251.5 169 77.5
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 1.4e-64 250.0 181 72.9
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 2.4e-64 249.2 181 71.8
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 4.1e-64 248.4 175 76.6
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 4.1e-64 248.4 180 73.3
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 5.3e-64 248.1 181 72.4
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 5.3e-64 248.1 181 72.4
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 5.3e-64 248.1 181 72.4
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 9.1e-64 247.3 179 73.7
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.2e-63 246.9 183 76.0
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 1.2e-63 246.9 175 72.0
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 1.2e-63 246.9 177 77.4
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.2e-63 246.9 176 74.4
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 1.2e-63 246.9 172 76.2
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 2.0e-63 246.1 181 71.8
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.6e-63 245.7 174 75.3
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 2.6e-63 245.7 174 75.3
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 3.4e-63 245.4 177 69.5
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 4.5e-63 245.0 172 73.8
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 4.5e-63 245.0 178 73.6
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.7e-63 244.2 174 73.6
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.0e-62 243.8 178 74.7
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.3e-62 243.4 169 74.6
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.3e-62 243.4 176 74.4
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 2.2e-62 242.7 177 69.5
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 5.0e-62 241.5 181 71.8
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 8.5e-62 240.7 174 74.1
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.1e-61 240.4 174 73.0
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 1.4e-61 240.0 181 69.6
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.4e-61 240.0 174 72.4
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 1.4e-61 240.0 189 69.3
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 1.9e-61 239.6 181 69.6
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 7.2e-61 237.7 167 74.9
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.1e-60 236.1 174 71.8
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.1e-60 236.1 171 74.3
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.1e-60 236.1 175 69.1
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 2.7e-60 235.7 176 72.7
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 1.0e-59 233.8 180 67.8
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.4e-59 233.4 174 71.3
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.8e-59 233.0 173 74.0
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 2.3e-59 232.6 174 67.8
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 2.3e-59 232.6 174 72.4
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 3.0e-59 232.3 177 70.6
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 3.9e-59 231.9 183 68.9
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 3.9e-59 231.9 178 68.5
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 5.1e-59 231.5 172 70.9
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.7e-59 231.1 171 71.9
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 6.7e-59 231.1 171 71.9
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 6.7e-59 231.1 178 70.8
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.6e-58 229.2 177 68.9
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.6e-58 229.2 177 68.9
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 4.4e-58 228.4 177 69.5
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 5.7e-58 228.0 177 69.5
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.3e-57 226.9 174 70.7
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.7e-57 226.5 178 66.3
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.8e-57 225.7 180 69.4
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 8.2e-57 224.2 173 71.1
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.4e-56 222.6 180 68.3
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 5.3e-56 221.5 182 68.1
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.0e-54 217.2 171 66.7
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.7e-54 216.5 182 62.1
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 5.0e-54 214.9 176 67.0
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 5.0e-54 214.9 152 70.4
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 1.9e-53 213.0 130 83.1
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 5.5e-53 211.5 169 67.5
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 7.2e-53 211.1 173 66.5
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 7.9e-52 207.6 171 65.5
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.0e-51 207.2 172 65.7
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 7.4e-50 201.1 180 60.6
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 2.2e-49 199.5 119 80.7
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 6.3e-49 198.0 152 69.7
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 6.3e-49 198.0 187 61.0
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 8.2e-49 197.6 249 50.6
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 4.1e-48 195.3 143 65.7
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.0e-46 188.3 178 62.4
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 6.7e-43 177.9 179 55.3
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 1.5e-42 176.8 172 55.2
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.5e-42 176.8 192 56.8
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 2.6e-42 176.0 193 57.5
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 9.7e-42 174.1 170 53.5
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.2e-39 167.2 148 66.2
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.0e-39 166.4 180 51.7
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.2e-36 157.1 95 78.9
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.2e-36 157.1 132 70.5
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.7e-34 148.3 84 84.5
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 5.7e-34 148.3 98 74.5
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 8.3e-33 144.4 174 50.0
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 9.1e-32 141.0 119 69.7
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 9.1e-32 141.0 119 69.7
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.6e-31 140.2 87 79.3
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.9e-31 138.3 179 48.0
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 1.7e-30 136.7 113 62.8
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 3.6e-28 129.0 118 63.6
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 8.8e-27 124.4 125 57.6
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 2.2e-25 119.8 127 52.8
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.5e-21 107.1 118 44.9
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 9.5e-21 104.4 105 46.7
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 3.0e-19 99.4 79 72.2
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.1e-16 90.9 86 57.0
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.4e-16 90.5 139 39.6
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 7.0e-16 88.2 92 54.3
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 7.8e-15 84.7 44 88.6
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 4.7e-12 75.5 80 51.2
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 1.8e-11 73.6 68 57.4
A06p00520 Brassica napus HOM05D004222 ORTHO05D004982 5.2e-11 72.0 65 64.6
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 1.5e-10 70.5 106 36.8
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 2.4e-08 63.2 85 44.7
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.0e-06 55.5 190 30.5


User provided reference genes

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