Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 3.5e-112 408.3 205 100.0
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.3e-90 336.7 199 86.9
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 2.9e-90 335.5 199 85.9
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 3.8e-90 335.1 199 85.4
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 8.4e-90 334.0 199 85.4
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 8.4e-90 334.0 199 84.9
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 4.2e-89 331.6 199 84.9
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 4.6e-88 328.2 200 84.0
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 4.8e-85 318.2 200 82.5
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 2.6e-83 312.4 199 78.9
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 1.1e-81 307.0 197 78.7
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 2.9e-74 282.3 229 65.9
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.4e-73 280.0 186 79.0
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 2.1e-69 266.2 209 63.6
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 1.1e-68 263.8 212 66.0
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 1.4e-68 263.5 209 62.7
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.8e-68 263.1 209 63.6
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 2.4e-68 262.7 204 63.7
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.3e-68 261.5 209 63.6
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 9.0e-68 260.8 213 64.3
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 3.4e-67 258.8 209 61.7
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 4.5e-67 258.5 209 62.7
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.8e-67 258.1 209 63.2
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 1.3e-66 256.9 211 63.5
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 1.7e-66 256.5 211 62.6
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 3.8e-66 255.4 213 62.4
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 1.4e-65 253.4 215 60.9
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.5e-65 252.7 205 64.4
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 2.5e-65 252.7 211 61.6
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 4.2e-65 251.9 213 62.4
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 5.5e-65 251.5 213 62.0
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 7.1e-65 251.1 210 60.0
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 7.1e-65 251.1 203 61.6
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 7.1e-65 251.1 205 60.5
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 9.3e-65 250.8 212 62.3
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.2e-64 250.4 214 60.7
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 1.2e-64 250.4 211 61.6
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 2.1e-64 249.6 208 61.5
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 2.1e-64 249.6 208 61.5
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 2.1e-64 249.6 200 64.0
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 2.1e-64 249.6 211 61.6
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 4.6e-64 248.4 204 60.8
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 4.6e-64 248.4 210 61.4
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 6.0e-64 248.1 208 60.6
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.0e-63 247.3 203 61.1
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 1.3e-63 246.9 201 61.2
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 1.3e-63 246.9 211 59.2
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 1.8e-63 246.5 208 59.6
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.8e-63 246.5 202 61.9
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 1.8e-63 246.5 212 59.9
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 2.3e-63 246.1 212 59.4
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.9e-63 245.4 199 61.8
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 3.9e-63 245.4 203 62.6
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 4.3e-62 241.9 203 62.1
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 7.4e-62 241.1 204 59.8
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 7.4e-62 241.1 198 62.6
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 9.6e-62 240.7 212 59.0
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 1.3e-61 240.4 214 58.9
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 1.3e-61 240.4 210 59.5
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 2.1e-61 239.6 209 59.3
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 4.8e-61 238.4 201 60.7
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 8.2e-61 237.7 210 58.6
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 1.1e-60 237.3 159 76.7
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 1.1e-60 237.3 197 60.4
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 1.8e-60 236.5 204 59.3
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 3.1e-60 235.7 209 57.9
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 4.1e-60 235.3 209 58.4
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 5.3e-60 235.0 198 61.1
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 9.0e-60 234.2 210 57.6
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 1.5e-59 233.4 194 59.8
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 4.5e-59 231.9 197 60.9
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 5.9e-59 231.5 205 57.6
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 1.3e-58 230.3 209 56.5
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.9e-58 229.2 208 56.7
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 3.8e-58 228.8 212 58.5
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 5.0e-58 228.4 251 52.2
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.1e-57 227.3 208 56.2
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 5.5e-57 224.9 198 59.1
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 5.5e-57 224.9 178 61.8
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 2.1e-56 223.0 214 57.0
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 1.0e-55 220.7 214 56.5
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.0e-55 220.7 147 69.4
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 5.1e-55 218.4 207 55.6
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 6.7e-55 218.0 202 55.4
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 1.9e-54 216.5 194 55.7
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 2.5e-54 216.1 215 52.1
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 5.7e-54 214.9 208 55.3
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 2.2e-53 213.0 145 79.3
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 2.8e-53 212.6 188 56.9
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 8.2e-53 211.1 201 54.7
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 1.8e-52 209.9 201 57.2
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 8.5e-50 201.1 188 56.4
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 1.1e-49 200.7 122 78.7
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 4.2e-49 198.7 212 52.4
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 5.5e-49 198.4 187 56.1
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.1e-48 194.9 201 54.7
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.0e-47 192.6 209 52.2
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 9.7e-46 187.6 232 48.3
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 1.5e-43 180.3 200 49.0
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 3.4e-43 179.1 208 50.0
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 4.5e-43 178.7 214 49.5
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 2.2e-42 176.4 178 51.7
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 1.4e-41 173.7 212 49.1
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 1.2e-40 170.6 202 46.0
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 1.2e-40 170.6 216 44.9
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.6e-40 170.2 96 76.0
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.1e-40 169.9 202 49.0
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 7.9e-40 167.9 199 48.2
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 3.0e-39 166.0 178 53.4
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.6e-38 162.9 214 45.3
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 7.0e-36 154.8 210 43.8
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 2.0e-35 153.3 170 52.4
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 8.5e-34 147.9 160 51.2
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 1.9e-33 146.7 160 53.8
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 2.5e-33 146.4 157 54.1
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 2.5e-33 146.4 149 53.7
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 5.5e-33 145.2 205 43.4
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 4.8e-29 132.1 72 95.8
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 1.1e-25 120.9 78 74.4
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 1.0e-23 114.4 70 78.6
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 9.8e-22 107.8 57 77.2
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 3.5e-19 99.4 173 38.2
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 8.6e-18 94.7 147 39.5
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 3.2e-17 92.8 67 58.2
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 3.0e-15 86.3 49 79.6
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 5.2e-15 85.5 75 57.3
C04p56940 Brassica napus HOM05D057202 ORTHO05D041615 3.4e-14 82.8 59 72.9
BolC4t27231H Brassica oleracea HOM05D057202 ORTHO05D041615 3.4e-14 82.8 59 72.9
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 5.7e-14 82.0 50 66.0
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 7.5e-14 81.6 57 71.9
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 3.5e-11 72.8 48 75.0
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 7.8e-11 71.6 48 75.0
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.0e-10 71.2 48 75.0
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.3e-10 70.1 48 72.9
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.1e-09 67.8 82 47.6
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 4.3e-09 65.9 43 72.1
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.6e-09 65.5 62 56.5
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 3.0e-07 59.7 47 59.6
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 1.2e-06 57.8 45 62.2
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 9.8e-06 54.7 29 82.8
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 9.8e-06 54.7 57 50.9


User provided reference genes

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