Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 4.5e-256 887.5 465 100.0
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 1.4e-249 865.9 469 97.0
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 1.8e-249 865.5 469 97.2
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 1.2e-245 852.8 469 95.5
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 5.1e-244 847.4 469 95.3
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 4.3e-243 844.3 469 94.9
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 2.8e-242 841.6 469 94.5
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 2.8e-242 841.6 469 94.2
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 2.4e-241 838.6 468 94.0
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 9.0e-241 836.6 471 94.3
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 2.2e-239 832.0 468 94.7
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 1.1e-238 829.7 495 89.7
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 2.5e-238 828.6 469 93.6
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 1.2e-237 826.2 469 92.8
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 2.8e-234 815.1 469 91.3
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 5.3e-233 810.8 470 90.2
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 5.9e-224 780.8 469 87.8
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 2.6e-208 728.8 409 93.9
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 1.3e-207 726.5 465 82.8
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 3.7e-194 681.8 473 77.6
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 4.5e-192 674.9 463 76.2
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 3.8e-191 671.8 443 77.9
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.1e-189 666.0 482 73.4
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 3.6e-189 665.2 447 77.9
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 1.2e-187 660.2 471 73.5
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.6e-187 659.1 471 74.5
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 4.4e-187 658.3 471 73.9
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 7.5e-187 657.5 444 77.7
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 9.8e-187 657.1 471 75.2
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 3.7e-186 655.2 472 73.5
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 6.3e-186 654.4 459 75.4
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 1.1e-185 653.7 464 75.2
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.1e-185 653.7 444 77.3
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 1.1e-185 653.7 460 74.3
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 5.4e-185 651.4 473 73.2
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 5.4e-185 651.4 460 75.4
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 5.4e-185 651.4 459 75.2
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 9.2e-185 650.6 459 73.9
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 1.2e-184 650.2 471 73.5
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 2.0e-184 649.4 465 74.8
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 2.0e-184 649.4 466 74.7
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.7e-184 649.0 448 76.3
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 3.5e-184 648.7 476 72.9
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 3.5e-184 648.7 473 72.5
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 4.6e-184 648.3 467 73.4
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 4.6e-184 648.3 462 74.7
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.3e-183 646.7 468 73.7
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 2.3e-183 646.0 446 76.0
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 3.9e-183 645.2 463 73.9
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 6.6e-183 644.4 446 75.8
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 6.6e-183 644.4 466 73.4
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 6.6e-183 644.4 470 73.8
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.1e-182 643.7 465 73.5
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 2.5e-182 642.5 485 71.3
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 4.3e-182 641.7 473 72.3
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 5.6e-182 641.3 477 71.7
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 9.5e-182 640.6 470 73.4
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 1.2e-181 640.2 509 69.2
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 2.1e-181 639.4 469 73.6
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 2.8e-181 639.0 456 74.8
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 1.0e-180 637.1 460 72.8
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 1.4e-180 636.7 473 72.1
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 1.4e-180 636.7 440 75.7
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 1.8e-180 636.3 468 72.2
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 2.3e-180 636.0 428 76.6
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 5.2e-180 634.8 473 72.5
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 8.9e-180 634.0 450 74.9
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.2e-179 633.6 459 72.8
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.5e-179 633.3 457 72.4
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 2.0e-179 632.9 468 72.0
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 5.8e-179 631.3 461 70.7
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 5.8e-179 631.3 453 72.8
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 7.5e-179 630.9 450 73.8
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 1.3e-178 630.2 444 75.2
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 2.9e-178 629.0 461 72.5
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 4.9e-178 628.2 428 76.6
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 4.9e-178 628.2 461 71.4
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 6.4e-178 627.9 467 72.2
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 6.4e-178 627.9 478 70.3
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 1.1e-177 627.1 459 70.8
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 2.4e-177 625.9 444 73.6
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 2.4e-177 625.9 459 71.0
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 1.6e-176 623.2 443 73.8
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 4.3e-174 615.1 448 72.8
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 1.2e-173 613.6 399 79.7
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 8.1e-173 610.9 456 71.5
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 5.2e-172 608.2 409 77.8
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 4.4e-171 605.1 452 70.4
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 1.7e-170 603.2 458 70.1
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 3.2e-169 599.0 442 72.9
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 3.3e-166 589.0 461 69.8
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 2.1e-165 586.3 481 65.7
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 8.1e-165 584.3 422 71.3
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 3.1e-164 582.4 423 71.4
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 3.4e-163 578.9 440 70.2
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 1.9e-161 573.2 420 74.3
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 6.6e-159 564.7 398 75.4
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 5.6e-158 561.6 549 58.8
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 1.1e-156 557.4 420 71.9
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 2.2e-154 549.7 446 66.8
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 8.4e-154 547.7 422 71.3
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.2e-152 543.9 423 67.1
HPP92_001489 Vanilla planifolia HOM05D004269 ORTHO05D007106 1.0e-151 540.8 385 71.2
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 5.6e-150 535.0 409 70.2
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 2.4e-148 529.6 395 72.7
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 2.1e-133 479.9 435 58.9
AagrBONN_evm.TU.Sc2ySwM_228.5429 Anthoceros agrestis HOM05D004269 ORTHO05D007106 4.2e-129 465.7 360 66.9
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 2.7e-128 463.0 428 63.3
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 1.3e-127 460.7 338 74.3
PRCOL_00001324 Prasinoderma coloniale HOM05D004269 ORTHO05D007106 1.5e-123 447.2 437 57.7
Zm00001eb012670 Zea mays HOM05D004269 ORTHO05D007106 2.0e-123 446.8 329 68.7
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 2.6e-123 446.4 485 56.1
MCO14G482 Micromonas commoda HOM05D004269 ORTHO05D007106 3.2e-121 439.5 465 54.2
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 3.1e-116 422.9 295 76.3
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 1.8e-100 370.5 388 55.9
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 4.7e-96 355.9 239 78.2
Actinidia13127 Actinidia chinensis HOM05D004269 ORTHO05D007106 3.5e-75 286.6 202 74.8
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.3e-74 284.6 231 68.8
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.9e-73 280.8 217 70.0
Hma1.2p1_1535F.1_g289480 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 1.6e-72 277.7 195 73.8
Hma1.2p1_1004F.1_g246860 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 5.0e-66 256.1 204 67.2
CBR_g37471 Chara braunii HOM05D004269 ORTHO05D007106 3.3e-65 253.4 218 61.0
VMungo0720G1280 Vigna mungo HOM05D004269 ORTHO05D007106 1.2e-56 224.9 147 74.8
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.2e-56 222.6 182 67.6
Cfa024613 Carpinus fangiana HOM05D004269 ORTHO05D007106 1.2e-54 218.4 458 36.2
SEGI_16124 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 3.5e-43 180.3 122 69.7
SEGI_30751 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 5.8e-38 162.9 142 64.1
SEGI_32622 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 2.2e-37 161.0 137 65.0
Cc02_g24250 Coffea canephora HOM05D004269 ORTHO05D007106 5.3e-31 139.8 103 68.0
Lsat_1_v5_gn_4_171201 Lactuca sativa HOM05D004269 ORTHO05D000661 5.3e-31 139.8 264 38.6
Lsat_1_v5_gn_7_20760 Lactuca sativa HOM05D004269 ORTHO05D020149 1.7e-29 134.8 158 54.4
Lsat_1_v5_gn_6_110780 Lactuca sativa HOM05D004269 ORTHO05D000661 3.2e-28 130.6 264 36.7
SEGI_12229 Sequoiadendron giganteum HOM05D004269 ORTHO05D007106 1.2e-27 128.6 103 66.0
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 1.3e-26 125.2 131 61.1
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 3.9e-26 123.6 131 60.3
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 3.9e-26 123.6 131 60.3
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 3.9e-26 123.6 131 60.3
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 3.9e-26 123.6 131 60.3
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 5.1e-26 123.2 131 60.3
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 6.7e-26 122.9 131 59.5
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 7.4e-25 119.4 130 55.4
QL09p013305 Quercus lobata HOM05D004269 ORTHO05D010618 7.4e-25 119.4 101 64.4
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 4.8e-24 116.7 137 57.7
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 1.8e-23 114.8 133 57.9
BcaB08g34435 Brassica carinata HOM05D004269 ORTHO05D000659 3.4e-22 110.5 62 87.1
Cfa017427 Carpinus fangiana HOM05D004269 ORTHO05D021565 1.7e-21 108.2 99 60.6
Lsat_1_v5_gn_1_18180 Lactuca sativa HOM05D000819 ORTHO05D000661 1.2e-19 102.1 121 52.9
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 3.9e-18 97.1 121 52.9
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 6.7e-18 96.3 127 51.2
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.1e-17 95.5 72 73.6
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 4.3e-17 93.6 111 56.8
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 8.1e-16 89.4 108 57.4
SalBow6G0271 Salvia bowleyana HOM05D004269 ORTHO05D000571 1.5e-14 85.1 84 54.8
Lsat_1_v5_gn_1_104560 Lactuca sativa HOM05D001098 ORTHO05D003515 2.5e-12 77.8 46 71.7
Lsat_1_v5_gn_9_124300 Lactuca sativa HOM05D001098 ORTHO05D003515 2.5e-12 77.8 46 71.7
AUR62004247 Chenopodium quinoa HOM05D004269 ORTHO05D021565 9.3e-12 75.9 93 47.3
Sabra15G0134100 Salix brachista HOM05D004269 ORTHO05D007106 2.7e-11 74.3 90 54.4
AUR62035732 Chenopodium quinoa HOM05D004269 ORTHO05D021565 4.6e-11 73.6 93 46.2
CARHR249580 Cardamine hirsuta HOM05D004269 ORTHO05D021565 7.9e-11 72.8 49 79.6
ECA236G0058 Erigeron canadensis HOM05D000039 ORTHO05D000370 1.0e-10 72.4 64 65.6
COL.COLO4_35964 Corchorus olitorius HOM05D001211 ORTHO05D001084 1.3e-10 72.0 75 54.7
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.3e-10 72.0 165 34.5
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 8.7e-10 69.3 177 31.6
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 1.1e-09 68.9 99 46.5
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 4.3e-09 67.0 44 81.8
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 4.8e-08 63.5 46 76.1
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 5.3e-07 60.1 48 68.8
BcaC07g37638 Brassica carinata HOM05D004269 ORTHO05D016737 1.5e-06 58.5 39 76.9
Glyma.18G131800 Glycine max HOM05D004269 ORTHO05D213362 2.6e-06 57.8 83 41.0
AUR62005065 Chenopodium quinoa HOM05D018411 ORTHO05D021565 1.0e-05 55.8 83 44.6


User provided reference genes

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