Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 2.0e-132 475.7 233 100.0
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 1.2e-81 307.0 161 91.3
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 8.1e-81 304.3 161 90.7
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 1.8e-80 303.1 159 90.6
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 1.8e-80 303.1 161 90.1
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 1.8e-80 303.1 159 90.6
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 5.2e-80 301.6 159 89.9
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 2.4e-77 292.7 157 88.5
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.1e-74 283.9 158 83.5
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 1.9e-74 283.1 158 84.2
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 4.0e-72 275.4 158 81.0
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 2.4e-69 266.2 165 76.4
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 9.3e-69 264.2 152 81.6
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 1.2e-68 263.8 158 77.8
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 6.0e-68 261.5 158 77.8
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 3.4e-55 219.2 157 63.7
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 8.7e-51 204.5 156 62.2
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 2.1e-49 199.9 154 61.7
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 1.2e-47 194.1 152 59.2
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 1.5e-47 193.7 139 61.9
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 2.6e-47 193.0 140 62.1
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 5.8e-47 191.8 153 59.5
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 5.8e-47 191.8 154 57.8
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 1.3e-46 190.7 156 57.1
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 1.7e-46 190.3 139 61.2
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.2e-46 189.9 152 57.2
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 2.2e-46 189.9 154 61.0
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 2.2e-46 189.9 155 58.7
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 2.9e-46 189.5 154 61.0
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 4.9e-46 188.7 154 60.4
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 8.4e-46 188.0 141 61.0
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 1.4e-45 187.2 153 56.2
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.2e-45 185.7 111 77.5
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 9.3e-45 184.5 152 56.6
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 7.9e-44 181.4 164 54.3
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 1.3e-43 180.6 158 53.2
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.8e-43 180.3 157 55.4
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 1.8e-43 180.3 161 54.0
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 2.3e-43 179.9 159 52.2
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 3.0e-43 179.5 145 61.4
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 3.0e-43 179.5 155 54.8
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 3.0e-43 179.5 161 53.4
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 6.7e-43 178.3 168 52.4
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 6.7e-43 178.3 158 52.5
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 8.7e-43 177.9 147 59.2
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 8.7e-43 177.9 157 53.5
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 8.7e-43 177.9 152 55.3
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 1.5e-42 177.2 140 56.4
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.9e-42 176.8 157 52.9
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 2.5e-42 176.4 143 56.6
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 3.3e-42 176.0 160 51.2
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 3.3e-42 176.0 152 54.6
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 4.3e-42 175.6 172 51.2
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 4.3e-42 175.6 157 52.2
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 5.7e-42 175.3 154 53.9
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 9.7e-42 174.5 145 53.8
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 1.3e-41 174.1 143 55.9
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 1.3e-41 174.1 152 55.3
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 1.3e-41 174.1 140 56.4
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.3e-41 174.1 155 53.5
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 1.6e-41 173.7 168 50.6
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 1.6e-41 173.7 164 53.0
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.6e-41 173.7 148 54.1
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 1.6e-41 173.7 148 54.1
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 2.2e-41 173.3 179 47.5
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 3.7e-41 172.6 145 55.9
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 4.8e-41 172.2 150 53.3
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 1.8e-40 170.2 149 52.3
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 2.4e-40 169.9 154 53.2
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 4.1e-40 169.1 141 57.4
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 4.1e-40 169.1 164 52.4
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 6.9e-40 168.3 138 56.5
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 9.0e-40 167.9 131 60.3
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 1.2e-39 167.5 141 56.7
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 1.5e-39 167.2 147 53.1
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 2.9e-38 162.9 153 50.3
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 1.9e-37 160.2 135 53.3
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 3.2e-37 159.5 130 58.5
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 1.2e-36 157.5 139 49.6
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 2.7e-36 156.4 172 48.3
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 4.6e-36 155.6 92 81.5
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 6.1e-36 155.2 149 48.3
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 7.9e-36 154.8 154 47.4
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 1.3e-35 154.1 138 52.2
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 3.0e-35 152.9 163 46.6
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 3.9e-35 152.5 142 50.7
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 6.7e-35 151.8 110 63.6
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 8.7e-35 151.4 152 49.3
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 8.7e-35 151.4 151 47.7
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 3.3e-34 149.4 137 50.4
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 9.7e-34 147.9 158 49.4
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 6.3e-33 145.2 137 46.7
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 8.2e-33 144.8 137 46.7
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 3.1e-32 142.9 147 49.7
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 6.9e-32 141.7 150 47.3
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 1.2e-31 141.0 130 52.3
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 7.7e-31 138.3 144 47.2
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 1.1e-29 134.4 162 41.4
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 1.4e-27 127.5 155 44.5
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 3.9e-27 125.9 152 44.7
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 2.0e-26 123.6 144 43.1
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 3.3e-26 122.9 105 57.1
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 1.7e-25 120.6 132 42.4
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 2.8e-25 119.8 198 34.3
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 4.8e-25 119.0 97 60.8
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 2.2e-22 110.2 143 37.8
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 1.1e-21 107.8 197 32.0
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 5.2e-19 99.0 68 63.2
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.7e-17 94.0 76 55.3
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 1.2e-15 87.8 134 35.8
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 2.2e-14 83.6 152 33.6
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 9.4e-13 78.2 52 59.6
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 1.2e-12 77.8 112 37.5
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 1.3e-09 67.8 86 40.7
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 1.6e-07 60.8 127 33.9
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 2.2e-06 57.0 50 56.0


User provided reference genes

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