Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 7.5e-62 240.4 122 100.0
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 7.8e-59 230.3 118 99.2
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 1.4e-55 219.5 116 96.6
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 1.4e-55 219.5 118 94.9
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 1.4e-55 219.5 116 96.6
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 3.1e-55 218.4 118 94.1
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 6.8e-55 217.2 116 95.7
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 7.0e-52 207.2 118 88.1
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.0e-51 205.7 113 91.2
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 7.8e-51 203.8 118 87.3
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.3e-50 202.2 114 88.6
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 6.6e-50 200.7 118 86.4
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 8.6e-50 200.3 112 89.3
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.5e-49 199.5 115 88.7
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.6e-48 194.9 118 83.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.4e-46 188.0 114 81.6
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 1.7e-45 186.0 114 83.3
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 1.7e-45 186.0 114 83.3
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 6.4e-45 184.1 118 78.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.6e-43 179.5 118 79.7
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 1.6e-43 179.5 108 83.3
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 3.9e-42 174.9 108 82.4
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 2.6e-38 162.2 113 71.7
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 4.4e-38 161.4 114 72.8
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 1.3e-37 159.8 116 70.7
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 2.9e-37 158.7 114 68.4
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 6.4e-37 157.5 114 65.8
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 8.3e-37 157.1 112 69.6
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 8.3e-37 157.1 112 68.8
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.4e-36 156.4 112 68.8
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 1.9e-36 156.0 111 68.5
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.9e-36 156.0 114 68.4
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 3.2e-36 155.2 112 67.9
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 3.2e-36 155.2 114 65.8
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 4.1e-36 154.8 114 67.5
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 5.4e-36 154.5 114 64.9
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 5.4e-36 154.5 114 65.8
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.6e-35 152.9 114 66.7
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.1e-35 152.5 112 68.8
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 2.7e-35 152.1 112 66.1
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 2.7e-35 152.1 112 66.1
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 4.6e-35 151.4 115 64.3
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 6.0e-35 151.0 115 71.3
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 6.0e-35 151.0 113 65.5
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.0e-34 150.2 113 63.7
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.3e-34 149.8 112 65.2
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 1.7e-34 149.4 122 63.1
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.7e-34 149.4 114 63.2
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 1.7e-34 149.4 114 65.8
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 2.3e-34 149.1 114 64.0
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.3e-34 149.1 112 64.3
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 3.0e-34 148.7 114 65.8
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.9e-34 148.3 113 64.6
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 3.9e-34 148.3 112 65.2
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 3.9e-34 148.3 113 61.9
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.9e-34 148.3 112 66.1
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 5.1e-34 147.9 112 65.2
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 6.6e-34 147.5 113 63.7
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 8.6e-34 147.1 114 62.3
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.5e-33 146.4 113 62.8
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.9e-33 146.0 111 64.9
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 1.9e-33 146.0 112 66.1
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.9e-33 146.0 113 62.8
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.3e-33 145.2 112 65.2
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.3e-33 145.2 112 66.1
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 4.3e-33 144.8 113 59.3
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 5.6e-33 144.4 116 57.8
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 7.3e-33 144.1 111 63.1
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 9.6e-33 143.7 112 61.6
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.2e-32 143.3 112 63.4
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.6e-32 142.9 111 64.0
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 2.1e-32 142.5 112 64.3
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.1e-32 142.5 114 62.3
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.7e-32 141.4 111 62.2
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 6.2e-32 141.0 114 61.4
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 6.2e-32 141.0 113 61.9
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 8.1e-32 140.6 111 62.2
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 8.1e-32 140.6 114 60.5
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 8.1e-32 140.6 112 60.7
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.8e-31 139.4 111 62.2
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 3.1e-31 138.7 114 57.0
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.0e-31 138.3 111 62.2
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 4.0e-31 138.3 112 58.9
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 4.0e-31 138.3 112 58.9
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 5.2e-31 137.9 113 61.1
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 6.8e-31 137.5 115 56.5
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.2e-30 136.7 112 58.0
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 1.5e-30 136.3 112 58.9
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 1.5e-30 136.3 112 58.9
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 2.6e-30 135.6 111 60.4
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 3.4e-30 135.2 110 62.7
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 3.4e-30 135.2 111 60.4
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 3.4e-30 135.2 115 55.7
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 3.4e-30 135.2 111 60.4
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.4e-30 135.2 112 58.9
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.4e-30 134.8 111 61.3
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 4.4e-30 134.8 112 56.2
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 4.4e-30 134.8 106 61.3
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 5.8e-30 134.4 112 57.1
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 5.8e-30 134.4 114 59.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.7e-29 132.9 106 61.3
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 2.2e-29 132.5 111 59.5
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 2.2e-29 132.5 111 59.5
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 2.9e-29 132.1 111 59.5
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 3.8e-29 131.7 112 56.2
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 6.4e-29 131.0 113 58.4
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 6.4e-29 131.0 111 60.4
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 8.4e-29 130.6 111 58.6
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 8.4e-29 130.6 111 57.7
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 4.2e-28 128.3 114 52.6
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 7.1e-28 127.5 103 59.2
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 9.3e-28 127.1 114 55.3
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.2e-27 126.7 111 56.8
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.2e-27 126.7 111 56.8
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 1.6e-27 126.3 100 60.0
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.6e-27 124.8 106 57.5
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 7.8e-27 124.0 111 55.9
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 7.8e-27 124.0 115 51.3
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 1.0e-26 123.6 111 58.6
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.7e-26 122.9 89 65.2
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.3e-26 122.5 114 56.1
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.5e-22 109.8 73 69.9
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 4.4e-22 108.2 112 53.6
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 9.9e-22 107.1 117 43.6
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.3e-21 106.7 116 43.1
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 8.4e-21 104.0 73 63.0
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.1e-20 103.6 73 63.0
TPR.G23032 Trifolium pratense HOM05D004294 ORTHO05D004899 3.2e-20 102.1 66 68.2
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 4.2e-20 101.7 80 63.8
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 5.4e-20 101.3 73 65.8
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.6e-19 99.8 72 63.9
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.7e-19 99.0 110 46.4
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 3.0e-18 95.5 103 50.5
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 6.6e-18 94.4 95 50.5
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 8.7e-18 94.0 73 64.4
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 3.3e-17 92.0 129 37.2
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 5.6e-17 91.3 113 39.8
MSTRG.4966 Avicennia marina HOM05D004294 ORTHO05D004899 2.8e-16 89.0 99 46.5
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 4.8e-16 88.2 111 38.7
Lsat_1_v5_gn_3_35920 Lactuca sativa HOM05D004294 ORTHO05D004899 6.2e-16 87.8 97 46.4
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.8e-14 81.3 112 46.4
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.7e-13 79.7 112 45.5
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 2.2e-13 79.3 112 45.5
Sp4g08150 Schrenkiella parvula HOM05D000096 ORTHO05D000045 2.4e-12 75.9 45 84.4
SEGI_31162 Sequoiadendron giganteum HOM05D004294 ORTHO05D004899 3.2e-12 75.5 63 52.4
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 9.3e-12 73.9 48 66.7
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 4.3e-09 65.1 69 42.0
Cre01.g055424 Chlamydomonas reinhardtii HOM05D004294 ORTHO05D004899 5.3e-07 58.2 68 39.7
MCO05G667 Micromonas commoda HOM05D004294 ORTHO05D004899 1.2e-06 57.0 105 31.4
SMO241G0031 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.5e-06 56.6 63 41.3
TAR371G0914 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.0e-05 53.9 41 65.9


User provided reference genes

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