Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g08932 Brassica carinata HOM05D000835 ORTHO05D004825 1.7e-38 162.2 80 100.0
BcaB06g29633 Brassica carinata HOM05D000835 ORTHO05D004825 3.5e-36 154.5 79 97.5
C08p02430 Brassica napus HOM05D000835 ORTHO05D004825 1.0e-35 152.9 79 94.9
BolC8t47034H Brassica oleracea HOM05D000835 ORTHO05D004825 1.0e-35 152.9 79 94.9
BraA08t35515Z Brassica rapa HOM05D000835 ORTHO05D004825 1.0e-35 152.9 79 94.9
A08p36080 Brassica napus HOM05D000835 ORTHO05D004825 2.3e-35 151.8 79 93.7
A06p43370 Brassica napus HOM05D000835 ORTHO05D004825 1.1e-34 149.4 79 91.1
BraA06t27223Z Brassica rapa HOM05D000835 ORTHO05D004825 1.1e-34 149.4 79 91.1
CARHR005750 Cardamine hirsuta HOM05D000835 ORTHO05D004825 1.1e-34 149.4 78 93.6
Thhalv10006688m.g Eutrema salsugineum HOM05D000835 ORTHO05D004825 2.5e-34 148.3 78 93.6
Sp1g05030 Schrenkiella parvula HOM05D000835 ORTHO05D004825 2.5e-34 148.3 78 93.6
AT1G06220 Arabidopsis thaliana HOM05D000835 ORTHO05D004825 4.3e-34 147.5 79 91.1
C08p51330 Brassica napus HOM05D000835 ORTHO05D004825 4.3e-34 147.5 79 91.1
BolC8t52659H Brassica oleracea HOM05D000835 ORTHO05D004825 4.3e-34 147.5 79 91.1
AL1G16200 Arabidopsis lyrata HOM05D000835 ORTHO05D004825 9.7e-34 146.4 78 91.0
Carub.0006s3241 Capsella rubella HOM05D000835 ORTHO05D004825 9.7e-34 146.4 78 91.0
Aa31LG9G5170 Aethionema arabicum HOM05D000835 ORTHO05D004825 1.6e-33 145.6 78 89.7
BcaC07g42078 Brassica carinata HOM05D000835 ORTHO05D004825 1.1e-32 142.9 79 89.9
PSO063G0608 Papaver somniferum HOM05D000835 ORTHO05D004825 1.8e-32 142.1 79 83.5
Aqoxy2G03921 Aquilegia oxysepala HOM05D000835 ORTHO05D004825 2.4e-32 141.7 79 84.8
PGR102G0588 Punica granatum HOM05D000835 ORTHO05D004825 2.4e-32 141.7 79 86.1
RcHm_v2.0_Chr2g0127751 Rosa chinensis HOM05D000835 ORTHO05D004825 2.4e-32 141.7 79 86.1
TWI63G1100 Tripterygium wilfordii HOM05D000835 ORTHO05D004825 2.4e-32 141.7 78 87.2
CANSAT01G0568 Cannabis sativa HOM05D000835 ORTHO05D004825 3.1e-32 141.4 79 83.5
COL.COLO4_19855 Corchorus olitorius HOM05D000835 ORTHO05D004825 3.1e-32 141.4 78 87.2
Glyma.13G165400 Glycine max HOM05D000835 ORTHO05D004825 4.1e-32 141.0 79 84.8
HanXRQChr10g0315351 Helianthus annuus HOM05D000835 ORTHO05D004825 4.1e-32 141.0 78 85.9
Lsat_1_v5_gn_5_94361 Lactuca sativa HOM05D000835 ORTHO05D004825 4.1e-32 141.0 78 85.9
THA.LOC104815391 Tarenaya hassleriana HOM05D000835 ORTHO05D004825 4.1e-32 141.0 78 85.9
ECA234G0529 Erigeron canadensis HOM05D000835 ORTHO05D004825 5.3e-32 140.6 78 84.6
Phvul.003G174100 Phaseolus vulgaris HOM05D000835 ORTHO05D004825 5.3e-32 140.6 78 85.9
Thecc.09G282500 Theobroma cacao HOM05D000835 ORTHO05D004825 5.3e-32 140.6 78 87.2
VMungo1215G0342 Vigna mungo HOM05D000835 ORTHO05D004825 5.3e-32 140.6 78 85.9
FvH4_7g03790 Fragaria vesca HOM05D000835 ORTHO05D004825 6.9e-32 140.2 79 86.1
FAN03G3509 Fragaria x ananassa HOM05D000835 ORTHO05D004825 6.9e-32 140.2 79 86.1
FAN06G2977 Fragaria x ananassa HOM05D000835 ORTHO05D004825 6.9e-32 140.2 79 86.1
FAN10G2975 Fragaria x ananassa HOM05D000835 ORTHO05D004825 6.9e-32 140.2 79 86.1
Atru.chr1.3223 Acer truncatum HOM05D000835 ORTHO05D004825 9.0e-32 139.8 79 83.5
Dinv37182 Davidia involucrata HOM05D000835 ORTHO05D004825 9.0e-32 139.8 78 84.6
Gohir.A09G095700 Gossypium hirsutum HOM05D000835 ORTHO05D004825 9.0e-32 139.8 78 85.9
Gohir.A13G222500 Gossypium hirsutum HOM05D000835 ORTHO05D004825 9.0e-32 139.8 78 84.6
Gohir.D09G095400 Gossypium hirsutum HOM05D000835 ORTHO05D004825 9.0e-32 139.8 78 85.9
Gohir.D13G227300 Gossypium hirsutum HOM05D000835 ORTHO05D004825 9.0e-32 139.8 78 84.6
Gorai.006G112100 Gossypium raimondii HOM05D000835 ORTHO05D004825 9.0e-32 139.8 78 85.9
Gorai.012G140400 Gossypium raimondii HOM05D000835 ORTHO05D004825 9.0e-32 139.8 78 84.6
Gorai.013G257800 Gossypium raimondii HOM05D000835 ORTHO05D004825 9.0e-32 139.8 78 84.6
Hma1.2p1_0518F.1_g171155 Hydrangea macrophylla HOM05D000835 ORTHO05D004825 9.0e-32 139.8 78 84.6
PSO017G2591 Papaver somniferum HOM05D000835 ORTHO05D004825 9.0e-32 139.8 79 82.3
Prupe.3G036300 Prunus persica HOM05D000835 ORTHO05D004825 9.0e-32 139.8 79 84.8
Cfa020900 Carpinus fangiana HOM05D000835 ORTHO05D004825 1.2e-31 139.4 79 83.5
Haze_20239 Corylus avellana HOM05D000835 ORTHO05D004825 1.2e-31 139.4 79 83.5
MD02G1013600 Malus domestica HOM05D000835 ORTHO05D004825 1.5e-31 139.0 79 84.8
MD15G1160400 Malus domestica HOM05D000835 ORTHO05D004825 1.5e-31 139.0 79 84.8
QL02p037156 Quercus lobata HOM05D000835 ORTHO05D004825 1.5e-31 139.0 79 82.3
TWI34G0205 Tripterygium wilfordii HOM05D000835 ORTHO05D004825 1.5e-31 139.0 78 85.9
Glyma.17G105700 Glycine max HOM05D000835 ORTHO05D004825 2.6e-31 138.3 79 83.5
Lj4g0000935 Lotus japonicus HOM05D000835 ORTHO05D004825 2.6e-31 138.3 79 83.5
Actinidia31056 Actinidia chinensis HOM05D000835 ORTHO05D004825 3.4e-31 137.9 78 82.1
Manes.14G137900 Manihot esculenta HOM05D000835 ORTHO05D004825 3.4e-31 137.9 78 82.1
CiPaw.16G118100 Carya illinoinensis HOM05D000835 ORTHO05D004825 4.5e-31 137.5 78 82.1
Duzib168G1623 Durio zibethinus HOM05D000835 ORTHO05D004825 4.5e-31 137.5 78 84.6
FAN01G0835 Fragaria x ananassa HOM05D000835 ORTHO05D004825 4.5e-31 137.5 78 84.6
Gohir.D04G153601 Gossypium hirsutum HOM05D000835 ORTHO05D004825 4.5e-31 137.5 78 83.3
MBI17_g08177_MAGBIO Magnolia biondii HOM05D000835 ORTHO05D004825 4.5e-31 137.5 78 83.3
Potri.006G190600 Populus trichocarpa HOM05D000835 ORTHO05D004825 4.5e-31 137.5 77 84.4
Sabra18G0097700 Salix brachista HOM05D000835 ORTHO05D004825 4.5e-31 137.5 77 84.4
Eucgr.C04091 Eucalyptus grandis HOM05D000835 ORTHO05D004825 5.9e-31 137.1 78 84.6
Cpa.g.sc7.82 Carica papaya HOM05D000835 ORTHO05D004825 7.7e-31 136.7 77 85.7
QL02p091140 Quercus lobata HOM05D000835 ORTHO05D004825 7.7e-31 136.7 79 81.0
TAR626G0627 Trochodendron aralioides HOM05D000835 ORTHO05D004825 7.7e-31 136.7 78 83.3
HPP92_020496 Vanilla planifolia HOM05D000835 ORTHO05D004825 7.7e-31 136.7 78 82.1
Rhsim09G0132100 Rhododendron simsii HOM05D000835 ORTHO05D004825 1.0e-30 136.3 78 82.1
CSS0040726 Camellia sinensis var. sinensis HOM05D000835 ORTHO05D004825 1.3e-30 136.0 78 80.8
CAN.G518.24 Capsicum annuum HOM05D000835 ORTHO05D004825 1.3e-30 136.0 78 80.8
Ca_21619_v3 Cicer arietinum L. HOM05D000835 ORTHO05D004825 1.3e-30 136.0 79 81.0
Psat4g032760 Pisum sativum HOM05D000835 ORTHO05D004825 1.3e-30 136.0 79 81.0
vmacro10387 Vaccinium macrocarpon HOM05D000835 ORTHO05D004825 1.3e-30 136.0 78 80.8
Solyc07g007210.3 Solanum lycopersicum HOM05D000835 ORTHO05D004825 1.7e-30 135.6 78 80.8
Sopen07g003260 Solanum pennellii HOM05D000835 ORTHO05D004825 1.7e-30 135.6 78 80.8
PGSC0003DMG400030733 Solanum tuberosum HOM05D000835 ORTHO05D004825 1.7e-30 135.6 78 80.8
Nitab4.5_0001021g0120 Nicotiana tabacum HOM05D000835 ORTHO05D004825 2.2e-30 135.2 78 80.8
Nitab4.5_0001555g0120 Nicotiana tabacum HOM05D000835 ORTHO05D004825 2.2e-30 135.2 78 80.8
Peaxi162Scf00391g00213 Petunia axillaris HOM05D000835 ORTHO05D004825 2.2e-30 135.2 78 80.8
Potri.018G114900 Populus trichocarpa HOM05D000835 ORTHO05D004825 2.2e-30 135.2 77 83.1
Lalb_Chr07g0179481 Lupinus albus HOM05D000835 ORTHO05D004825 2.9e-30 134.8 78 83.3
SEGI_40149 Sequoiadendron giganteum HOM05D000835 ORTHO05D004825 3.8e-30 134.4 78 80.8
TPR.G15808 Trifolium pratense HOM05D000835 ORTHO05D004825 5.0e-30 134.0 79 79.7
unitig_747.g21982 Utricularia gibba HOM05D000835 ORTHO05D004825 5.0e-30 134.0 78 80.8
DCAR_014922 Daucus carota HOM05D000835 ORTHO05D004825 8.5e-30 133.3 78 80.8
Lalb_Chr13g0301221 Lupinus albus HOM05D000835 ORTHO05D004825 1.1e-29 132.9 78 82.1
Medtr4g116430 Medicago truncatula HOM05D000835 ORTHO05D004825 1.1e-29 132.9 79 78.5
Sc23g0003990 Simmondsia chinensis HOM05D000835 ORTHO05D004825 1.1e-29 132.9 78 78.2
HPP92_020500 Vanilla planifolia HOM05D000835 ORTHO05D004825 1.1e-29 132.9 78 80.8
Migut.J00851 Erythranthe guttata HOM05D000835 ORTHO05D004825 1.9e-29 132.1 78 80.8
RcHm_v2.0_Chr1g0327101 Rosa chinensis HOM05D000835 ORTHO05D004825 1.9e-29 132.1 79 81.0
AT5G25230 Arabidopsis thaliana HOM05D000835 ORTHO05D004825 2.5e-29 131.7 81 86.4
MSTRG.21107 Avicennia marina HOM05D000835 ORTHO05D004825 2.5e-29 131.7 78 78.2
Cc05_g02310 Coffea canephora HOM05D000835 ORTHO05D004825 2.5e-29 131.7 78 79.5
CDE02G4178 Ceratophyllum demersum HOM05D000835 ORTHO05D004825 3.2e-29 131.3 79 78.5
GSVIVG01012881001 Vitis vinifera HOM05D000835 ORTHO05D004825 3.2e-29 131.3 79 78.5
ECA247G0982 Erigeron canadensis HOM05D000835 ORTHO05D004825 7.2e-29 130.2 78 79.5
Nitab4.5_0012668g0020 Nicotiana tabacum HOM05D000835 ORTHO05D004825 7.2e-29 130.2 78 78.2
Ah.05g177280 Amaranthus hybridus HOM05D000835 ORTHO05D004825 9.4e-29 129.8 77 79.2
Lj7A447G15 Lonicera japonica HOM05D000835 ORTHO05D004825 9.4e-29 129.8 78 78.2
Lj7A450G51 Lonicera japonica HOM05D000835 ORTHO05D004825 9.4e-29 129.8 78 78.2
SGA_v2.0_scaffold14G07042 Striga asiatica HOM05D000835 ORTHO05D004825 1.6e-28 129.0 78 78.2
ATR0620G065 Amborella trichopoda HOM05D000835 ORTHO05D004825 2.1e-28 128.6 78 79.5
Hund26921 Selenicereus undatus HOM05D000835 ORTHO05D004825 2.1e-28 128.6 78 78.2
CDE02G3324 Ceratophyllum demersum HOM05D000835 ORTHO05D004825 3.6e-28 127.9 79 77.2
SalBow3G2439 Salvia bowleyana HOM05D000835 ORTHO05D004825 3.6e-28 127.9 78 78.2
AUR62014521 Chenopodium quinoa HOM05D000835 ORTHO05D004825 6.1e-28 127.1 77 76.6
AUR62038013 Chenopodium quinoa HOM05D000835 ORTHO05D004825 6.1e-28 127.1 77 76.6
EL10Ac1g00674 Beta vulgaris HOM05D000835 ORTHO05D004825 5.7e-26 120.6 77 75.3
arahy.Tifrunner.gnm1.ann1.6LFK0V Arachis hypogaea HOM05D000835 ORTHO05D004825 1.3e-25 119.4 78 75.6
arahy.Tifrunner.gnm1.ann1.FP9NT8 Arachis hypogaea HOM05D000835 ORTHO05D004825 1.3e-25 119.4 78 75.6
Zm00001eb386630 Zea mays HOM05D000835 ORTHO05D004825 2.6e-23 111.7 81 69.1
Os06g0608300 Oryza sativa ssp. japonica HOM05D000835 ORTHO05D004825 3.4e-23 111.3 81 67.9
Pp3c6_29320 Physcomitrium patens HOM05D000835 ORTHO05D004825 1.9e-21 105.5 78 64.1
CBR_g2801 Chara braunii HOM05D000835 ORTHO05D004825 3.2e-21 104.8 79 65.8
SMO116G0243 Selaginella moellendorffii HOM05D000835 ORTHO05D004825 3.2e-21 104.8 79 67.1
Mapoly0008s0107 Marchantia polymorpha HOM05D000835 ORTHO05D004825 2.1e-20 102.1 79 60.8
Pp3c27_6340 Physcomitrium patens HOM05D000835 ORTHO05D004825 3.0e-19 98.2 78 57.7
Ciclev10007342m.g Citrus clementina HOM05D000835 ORTHO05D004825 6.7e-19 97.1 78 61.5
Cre17.g737250 Chlamydomonas reinhardtii HOM05D000835 ORTHO05D004825 7.0e-16 87.0 80 55.0
MCO11G411 Micromonas commoda HOM05D000835 ORTHO05D004825 1.7e-14 82.4 76 56.6
BcaB03g13429 Brassica carinata HOM05D000835 ORTHO05D004825 3.2e-13 78.2 39 92.3
PSO339G2324 Papaver somniferum HOM05D000835 ORTHO05D004825 6.1e-12 73.9 40 85.0
Cfa022544 Carpinus fangiana HOM05D000835 ORTHO05D004825 1.0e-11 73.2 75 49.3
SEGI_09787 Sequoiadendron giganteum HOM05D000835 ORTHO05D004825 1.4e-11 72.8 78 56.4
SEGI_29204 Sequoiadendron giganteum HOM05D000835 ORTHO05D004825 1.7e-09 65.9 78 53.8
SEGI_13256 Sequoiadendron giganteum HOM05D000835 ORTHO05D004825 1.1e-08 63.2 78 48.7
Sed0019814 Sechium edule HOM05D000835 ORTHO05D004825 3.1e-08 61.6 37 78.4
CsaV3_2G003560 Cucumis sativus L. HOM05D000835 ORTHO05D004825 4.1e-08 61.2 37 81.1
ClCG02G017230 Citrullus lanatus HOM05D000835 ORTHO05D004825 5.3e-08 60.8 37 78.4
MELO3C004440.2 Cucumis melo HOM05D000835 ORTHO05D004825 5.3e-08 60.8 37 78.4
Oeu012220.1 Olea europaea HOM05D000835 ORTHO05D004825 1.7e-06 55.8 37 70.3
PRCOL_00003930 Prasinoderma coloniale HOM05D000835 ORTHO05D004825 2.2e-06 55.5 88 35.2
CAN.G1140.7 Capsicum annuum HOM05D000835 ORTHO05D004825 2.9e-06 55.1 45 53.3
SEGI_41092 Sequoiadendron giganteum HOM05D000835 ORTHO05D000979 8.5e-06 53.5 37 64.9


User provided reference genes

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