Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB02g07100 Brassica carinata HOM05D004258 ORTHO05D005163 1.6e-297 1025.4 529 100.0
C06p31370 Brassica napus HOM05D004258 ORTHO05D005163 2.2e-219 765.8 498 84.5
BolC6t38273H Brassica oleracea HOM05D004258 ORTHO05D005163 7.7e-212 740.7 497 82.7
BraA07t30452Z Brassica rapa HOM05D004258 ORTHO05D005163 2.5e-210 735.7 496 79.2
BcaC08g45483 Brassica carinata HOM05D004258 ORTHO05D005163 9.7e-207 723.8 404 94.6
A07p28070 Brassica napus HOM05D004258 ORTHO05D005163 5.3e-205 718.0 496 78.4
Sp5g32420 Schrenkiella parvula HOM05D004258 ORTHO05D005163 5.3e-197 691.4 517 76.0
Thhalv10018403m.g Eutrema salsugineum HOM05D004258 ORTHO05D005163 8.3e-182 641.0 514 67.7
CARHR070720 Cardamine hirsuta HOM05D004258 ORTHO05D005163 3.2e-178 629.0 509 66.8
Carub.0002s2412 Capsella rubella HOM05D004258 ORTHO05D005163 5.5e-178 628.2 518 65.6
AL2G37430 Arabidopsis lyrata HOM05D004258 ORTHO05D005163 4.7e-177 625.2 517 66.3
AT1G77250 Arabidopsis thaliana HOM05D004258 ORTHO05D005163 4.7e-177 625.2 518 66.2
Aa31LG4G7240 Aethionema arabicum HOM05D004258 ORTHO05D005163 2.5e-154 549.7 506 61.1
C06p51420 Brassica napus HOM05D004258 ORTHO05D005163 4.9e-150 535.4 507 60.0
A07p42810 Brassica napus HOM05D004258 ORTHO05D005163 1.2e-148 530.8 516 58.5
BolC6t40160H Brassica oleracea HOM05D004258 ORTHO05D005163 1.8e-144 516.9 521 57.6
BraA07t31801Z Brassica rapa HOM05D004258 ORTHO05D005163 1.3e-139 500.7 526 56.1
BcaNung04998 Brassica carinata HOM05D004258 ORTHO05D005163 1.4e-128 464.2 614 49.2
A06p09270 Brassica napus HOM05D004258 ORTHO05D005163 1.7e-126 457.2 300 78.0
THA.LOC104813686 Tarenaya hassleriana HOM05D004258 ORTHO05D005163 1.3e-123 447.6 526 50.0
THA.LOC104812076 Tarenaya hassleriana HOM05D004258 ORTHO05D005163 9.0e-120 434.9 522 48.9
Duzib116G0801 Durio zibethinus HOM05D004258 ORTHO05D005163 3.7e-81 306.6 454 40.1
Gohir.D05G240700 Gossypium hirsutum HOM05D004258 ORTHO05D005163 6.3e-81 305.8 406 40.9
Gorai.009G249500 Gossypium raimondii HOM05D004258 ORTHO05D005163 6.3e-81 305.8 406 40.9
Gohir.D05G240600 Gossypium hirsutum HOM05D004258 ORTHO05D005163 1.2e-79 301.6 429 44.5
Gorai.009G249400 Gossypium raimondii HOM05D004258 ORTHO05D005163 1.2e-79 301.6 429 44.5
Atru.chr13.1596 Acer truncatum HOM05D004258 ORTHO05D005163 1.3e-78 298.1 561 36.4
Gohir.A05G238700 Gossypium hirsutum HOM05D004258 ORTHO05D005163 2.9e-78 297.0 462 37.9
Thecc.08G134400 Theobroma cacao HOM05D004258 ORTHO05D005163 2.9e-78 297.0 593 34.7
Cfa018415 Carpinus fangiana HOM05D004258 ORTHO05D005163 3.8e-78 296.6 465 39.6
COL.COLO4_37672 Corchorus olitorius HOM05D004258 ORTHO05D005163 1.1e-77 295.0 461 38.0
Haze_17646 Corylus avellana HOM05D004258 ORTHO05D005163 1.9e-77 294.3 465 38.7
RcHm_v2.0_Chr6g0296911 Rosa chinensis HOM05D004258 ORTHO05D005163 5.5e-77 292.7 411 41.1
QL09p032109 Quercus lobata HOM05D004258 ORTHO05D005163 6.1e-76 289.3 410 41.5
Dinv27259 Davidia involucrata HOM05D004258 ORTHO05D005163 5.2e-75 286.2 394 41.6
QL09p031581 Quercus lobata HOM05D004258 ORTHO05D005163 6.7e-75 285.8 410 41.0
MD15G1132400 Malus domestica HOM05D004258 ORTHO05D005163 2.6e-74 283.9 406 39.7
Lj1g0024592 Lotus japonicus HOM05D004258 ORTHO05D005163 4.4e-74 283.1 487 38.0
CiPaw.15G030100 Carya illinoinensis HOM05D004258 ORTHO05D005163 3.7e-73 280.0 407 41.0
Prupe.1G487600 Prunus persica HOM05D004258 ORTHO05D005163 1.4e-72 278.1 412 38.8
MD08G1160700 Malus domestica HOM05D004258 ORTHO05D005163 1.8e-72 277.7 398 40.2
Actinidia15205 Actinidia chinensis HOM05D004258 ORTHO05D005163 2.4e-72 277.3 394 40.4
Actinidia21269 Actinidia chinensis HOM05D004258 ORTHO05D005163 2.4e-72 277.3 391 42.2
Ca_16617_v3 Cicer arietinum L. HOM05D004258 ORTHO05D005163 4.1e-72 276.6 411 39.9
Potri.005G183700 Populus trichocarpa HOM05D004258 ORTHO05D005163 5.3e-72 276.2 559 34.3
Glyma.06G118300 Glycine max HOM05D004258 ORTHO05D005163 1.2e-71 275.0 402 40.3
FvH4_2g28030 Fragaria vesca HOM05D004258 ORTHO05D005163 1.6e-71 274.6 414 39.4
CiPaw.15G030500 Carya illinoinensis HOM05D004258 ORTHO05D005163 2.0e-71 274.2 412 40.5
Manes.18G083535 Manihot esculenta HOM05D004258 ORTHO05D005163 2.0e-71 274.2 368 39.9
Gohir.A05G238800 Gossypium hirsutum HOM05D004258 ORTHO05D005163 2.7e-71 273.9 368 40.5
Lalb_Chr04g0253581 Lupinus albus HOM05D004258 ORTHO05D005163 5.9e-71 272.7 405 41.2
CSS0048101 Camellia sinensis var. sinensis HOM05D004258 ORTHO05D005163 7.7e-71 272.3 388 39.7
VMungo0647G1746 Vigna mungo HOM05D004258 ORTHO05D005163 7.7e-71 272.3 411 39.4
TWI34G1292 Tripterygium wilfordii HOM05D004258 ORTHO05D005163 1.3e-70 271.6 438 37.2
Rhsim11G0072600 Rhododendron simsii HOM05D004258 ORTHO05D005163 5.0e-70 269.6 446 37.2
Sabra05G0139100 Salix brachista HOM05D004258 ORTHO05D005163 1.1e-69 268.5 428 37.4
Ah.05g169020 Amaranthus hybridus HOM05D004258 ORTHO05D005163 1.5e-69 268.1 403 44.7
Hma1.2p1_0159F.1_g070350 Hydrangea macrophylla HOM05D004258 ORTHO05D005163 2.5e-69 267.3 401 39.7
GSVIVG01008795001 Vitis vinifera HOM05D004258 ORTHO05D005163 2.5e-69 267.3 441 34.7
vmacro00873 Vaccinium macrocarpon HOM05D004258 ORTHO05D005163 3.2e-69 266.9 491 36.3
Eucgr.E00982 Eucalyptus grandis HOM05D004258 ORTHO05D005163 9.4e-69 265.4 404 38.1
Phvul.001G067001 Phaseolus vulgaris HOM05D004258 ORTHO05D005163 1.2e-68 265.0 400 40.5
Psat5g084240 Pisum sativum HOM05D004258 ORTHO05D005163 1.6e-68 264.6 412 39.1
Glyma.13G035400 Glycine max HOM05D004258 ORTHO05D005163 2.7e-68 263.8 407 39.1
VMungo1309G2581 Vigna mungo HOM05D004258 ORTHO05D005163 3.6e-68 263.5 405 38.5
Ciclev10000725m.g Citrus clementina HOM05D004258 ORTHO05D005163 8.0e-68 262.3 399 38.6
Cc10_g13570 Coffea canephora HOM05D004258 ORTHO05D005163 8.0e-68 262.3 406 38.4
Lalb_Chr10g0101471 Lupinus albus HOM05D004258 ORTHO05D005163 1.4e-67 261.5 404 39.1
Glyma.14G156600 Glycine max HOM05D004258 ORTHO05D005163 6.8e-67 259.2 407 39.1
Potri.002G076900 Populus trichocarpa HOM05D004258 ORTHO05D005163 6.8e-67 259.2 588 32.0
Sabra02G0060400 Salix brachista HOM05D004258 ORTHO05D005163 6.8e-67 259.2 414 37.7
EL10Ac1g01370 Beta vulgaris HOM05D004258 ORTHO05D005163 8.8e-67 258.8 406 37.9
Lalb_Chr11g0066231 Lupinus albus HOM05D004258 ORTHO05D005163 1.5e-66 258.1 480 36.7
Oeu047167.1 Olea europaea HOM05D004258 ORTHO05D005163 1.5e-66 258.1 393 36.9
Sed0013187 Sechium edule HOM05D004258 ORTHO05D005163 1.5e-66 258.1 423 36.9
TPR.G6348 Trifolium pratense HOM05D004258 ORTHO05D005163 2.0e-66 257.7 399 37.8
MSTRG.22397 Avicennia marina HOM05D004258 ORTHO05D005163 4.4e-66 256.5 389 38.8
Dinv14709 Davidia involucrata HOM05D004258 ORTHO05D005163 7.5e-66 255.8 413 37.0
Lalb_Chr17g0343571 Lupinus albus HOM05D004258 ORTHO05D005163 7.5e-66 255.8 485 34.6
Peaxi162Scf00066g00717 Petunia axillaris HOM05D004258 ORTHO05D005163 1.3e-65 255.0 407 38.6
Sc02g0004700 Simmondsia chinensis HOM05D004258 ORTHO05D005163 1.1e-64 251.9 460 35.9
MSTRG.25354 Avicennia marina HOM05D004258 ORTHO05D005163 2.4e-64 250.8 399 38.6
CsaV3_7G022050 Cucumis sativus L. HOM05D004258 ORTHO05D005163 4.1e-64 250.0 410 35.6
Nitab4.5_0002625g0020 Nicotiana tabacum HOM05D004258 ORTHO05D005163 1.6e-63 248.1 399 37.8
Nitab4.5_0008327g0020 Nicotiana tabacum HOM05D004258 ORTHO05D005163 5.9e-63 246.1 442 36.2
Solyc04g058190.3 Solanum lycopersicum HOM05D004258 ORTHO05D005163 5.9e-63 246.1 407 37.3
FAN27G1652 Fragaria x ananassa HOM05D004258 ORTHO05D005163 5.0e-62 243.0 414 37.2
Sopen04g026090 Solanum pennellii HOM05D004258 ORTHO05D005163 8.6e-62 242.3 407 36.6
FAN20G3077 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.1e-61 241.9 410 37.1
FAN15G0778 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.5e-61 241.5 410 36.8
FAN15G1038 Fragaria x ananassa HOM05D004258 ORTHO05D005163 1.5e-61 241.5 410 36.8
TAR628G1383 Trochodendron aralioides HOM05D004258 ORTHO05D005163 1.9e-61 241.1 488 33.2
arahy.Tifrunner.gnm1.ann1.57F5XX Arachis hypogaea HOM05D004258 ORTHO05D005163 2.5e-61 240.7 408 36.8
FAN24G0072 Fragaria x ananassa HOM05D004258 ORTHO05D005163 2.5e-61 240.7 432 36.1
MELO3C013235.2 Cucumis melo HOM05D004258 ORTHO05D005163 3.3e-61 240.4 476 32.6
PGR044G0336 Punica granatum HOM05D004258 ORTHO05D005163 7.2e-61 239.2 397 37.8
arahy.Tifrunner.gnm1.ann1.D2PCJK Arachis hypogaea HOM05D004258 ORTHO05D005163 1.2e-60 238.4 407 36.4
ECA232G4755 Erigeron canadensis HOM05D004258 ORTHO05D005163 6.1e-60 236.1 391 33.2
BcaC08g45482 Brassica carinata HOM05D004258 ORTHO05D005163 1.0e-59 235.3 115 100.0
HanXRQChr15g0487241 Helianthus annuus HOM05D004258 ORTHO05D005163 1.0e-59 235.3 374 36.1
Manes.02G169600 Manihot esculenta HOM05D004258 ORTHO05D005163 1.4e-59 235.0 526 32.5
ClCG11G008920 Citrullus lanatus HOM05D004258 ORTHO05D005163 2.3e-59 234.2 488 31.6
CAN.G46.10 Capsicum annuum HOM05D004258 ORTHO05D005163 3.0e-59 233.8 465 33.3
Sed0013494 Sechium edule HOM05D004258 ORTHO05D005163 4.0e-59 233.4 420 32.6
SGA_v2.0_scaffold28G11967 Striga asiatica HOM05D004258 ORTHO05D005163 8.9e-59 232.3 387 35.9
HanXRQChr09g0256641 Helianthus annuus HOM05D004258 ORTHO05D005163 1.5e-58 231.5 500 32.6
PSO528G0114 Papaver somniferum HOM05D004258 ORTHO05D005163 4.4e-58 229.9 398 35.9
PSO170G1843 Papaver somniferum HOM05D004258 ORTHO05D005163 7.5e-58 229.2 403 35.5
DCAR_016655 Daucus carota HOM05D004258 ORTHO05D005163 1.1e-56 225.3 348 37.6
Oeu045955.1 Olea europaea HOM05D004258 ORTHO05D005163 1.1e-56 225.3 349 37.2
Migut.C01074 Erythranthe guttata HOM05D004258 ORTHO05D005163 1.8e-56 224.6 453 32.5
TAR381G0947 Trochodendron aralioides HOM05D004258 ORTHO05D005163 1.2e-55 221.9 474 33.3
SGA_v2.0_scaffold25G11141 Striga asiatica HOM05D004258 ORTHO05D005163 7.8e-55 219.2 388 34.5
Medtr3g088665 Medicago truncatula HOM05D004258 ORTHO05D005163 1.7e-54 218.0 403 35.5
Phvul.009G130800 Phaseolus vulgaris HOM05D004258 ORTHO05D005163 9.5e-53 212.2 293 39.6
Cpa.g.sc64.156 Carica papaya HOM05D004258 ORTHO05D005163 1.2e-52 211.8 299 40.5
TWI32G0532 Tripterygium wilfordii HOM05D004258 ORTHO05D005163 2.1e-52 211.1 331 38.7
Lsat_1_v5_gn_4_134340 Lactuca sativa HOM05D004258 ORTHO05D005163 3.6e-52 210.3 392 33.9
Hund26770 Selenicereus undatus HOM05D004258 ORTHO05D005163 4.7e-52 209.9 496 32.9
MBI03_g13503_MAGBIO Magnolia biondii HOM05D004258 ORTHO05D005163 2.6e-50 204.1 499 34.9
Aqoxy3G01754 Aquilegia oxysepala HOM05D004258 ORTHO05D005163 7.5e-50 202.6 432 32.2
CANSAT25G3602 Cannabis sativa HOM05D004258 ORTHO05D005163 1.7e-49 201.4 397 31.2
CDE06G0269 Ceratophyllum demersum HOM05D004258 ORTHO05D005163 3.7e-49 200.3 443 36.8
AUR62007696 Chenopodium quinoa HOM05D004258 ORTHO05D005163 1.3e-46 191.8 293 37.5
AUR62013446 Chenopodium quinoa HOM05D004258 ORTHO05D005163 1.7e-46 191.4 291 36.8
Eucgr.L00408 Eucalyptus grandis HOM05D004258 ORTHO05D005163 2.3e-46 191.0 294 37.8
unitig_0.g2112 Utricularia gibba HOM05D004258 ORTHO05D005163 8.6e-46 189.1 382 33.5
Zm00001eb174450 Zea mays HOM05D004258 ORTHO05D005163 4.7e-44 183.3 395 31.9
SHI09239 Sapria himalayana HOM05D004258 ORTHO05D005163 4.0e-43 180.3 368 32.6
PGSC0003DMG400018006 Solanum tuberosum HOM05D004258 ORTHO05D005163 3.4e-42 177.2 272 39.7
Zm00001eb260200 Zea mays HOM05D004258 ORTHO05D005163 4.4e-42 176.8 338 32.8
Hma1.2p1_1935F.1_g308145 Hydrangea macrophylla HOM05D004258 ORTHO05D005163 3.7e-41 173.7 292 36.0
Eucgr.E03502 Eucalyptus grandis HOM05D004258 ORTHO05D005163 1.1e-40 172.2 225 40.9
Os08g0105000 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 1.1e-40 172.2 363 31.7
DCAR_028202 Daucus carota HOM05D004258 ORTHO05D005163 3.2e-40 170.6 275 37.1
Sabra05G0140400 Salix brachista HOM05D004258 ORTHO05D005163 3.0e-38 164.1 226 39.8
Lj4C663T10 Lonicera japonica HOM05D004258 ORTHO05D005163 1.6e-36 158.3 223 37.2
ATR0820G108 Amborella trichopoda HOM05D004258 ORTHO05D005163 2.3e-35 154.5 359 31.2
HPP92_001075 Vanilla planifolia HOM05D004258 ORTHO05D005163 2.6e-34 151.0 465 25.2
Zm00001eb356650 Zea mays HOM05D004258 ORTHO05D005163 1.1e-32 145.6 447 29.1
CiPaw.15G030600 Carya illinoinensis HOM05D004258 ORTHO05D005163 2.4e-32 144.4 269 34.9
Lj7A352T22 Lonicera japonica HOM05D004258 ORTHO05D005163 2.3e-30 137.9 377 27.6
SEGI_30620 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 2.4e-24 117.9 447 23.3
SEGI_07426 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 3.2e-24 117.5 443 24.4
SEGI_17891 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 2.5e-21 107.8 477 22.4
CDE08G1116 Ceratophyllum demersum HOM05D004258 ORTHO05D005163 5.6e-21 106.7 208 30.3
Eucgr.L03758 Eucalyptus grandis HOM05D004258 ORTHO05D005163 1.1e-19 102.4 133 44.4
SEGI_25396 Sequoiadendron giganteum HOM05D004258 ORTHO05D005163 3.4e-18 97.4 221 29.9
Nn1g08938 Nelumbo nucifera HOM05D004258 ORTHO05D005163 1.4e-16 92.0 90 51.1
Zm00001eb145630 Zea mays HOM05D004258 ORTHO05D005163 7.1e-16 89.7 79 50.6
Nn5g28458 Nelumbo nucifera HOM05D004258 ORTHO05D005163 1.1e-13 82.4 106 36.8
Os01g0883400 Oryza sativa ssp. japonica HOM05D004258 ORTHO05D005163 4.3e-13 80.5 121 33.1
DCAR_028203 Daucus carota HOM05D004258 ORTHO05D005163 3.6e-12 77.4 87 44.8
Lj4A673G15 Lonicera japonica HOM05D004258 ORTHO05D005163 6.2e-12 76.6 183 29.5
Hma1.2p1_1177F.1_g264340 Hydrangea macrophylla HOM05D004258 ORTHO05D005163 1.0e-06 59.3 67 40.3
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 3.0e-06 57.8 87 31.0


User provided reference genes

Program Settings