Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05452 Brassica carinata HOM05D006276 ORTHO05D007724 1.4e-162 576.2 293 100.0
BraA03t09860Z Brassica rapa HOM05D006276 ORTHO05D007724 4.2e-127 458.4 301 80.7
A03p05210 Brassica napus HOM05D006276 ORTHO05D007724 3.3e-124 448.7 301 79.1
Carub.0006s1034 Capsella rubella HOM05D006276 ORTHO05D007724 5.0e-120 434.9 303 74.9
C03p06010 Brassica napus HOM05D006276 ORTHO05D007724 1.1e-119 433.7 301 76.7
Thhalv10014178m.g Eutrema salsugineum HOM05D006276 ORTHO05D007724 3.2e-119 432.2 310 73.9
Sp6g31790 Schrenkiella parvula HOM05D006276 ORTHO05D007724 3.2e-119 432.2 301 75.1
BolC3t13112H Brassica oleracea HOM05D006276 ORTHO05D007724 7.2e-119 431.0 301 76.1
A10p25940 Brassica napus HOM05D006276 ORTHO05D007724 1.1e-116 423.7 304 75.0
AT5G11810 Arabidopsis thaliana HOM05D006276 ORTHO05D007724 3.3e-116 422.2 307 73.3
BolC9t59330H Brassica oleracea HOM05D006276 ORTHO05D007724 1.8e-114 416.4 304 73.0
BraA10t44656Z Brassica rapa HOM05D006276 ORTHO05D007724 2.4e-114 416.0 304 73.0
C09p65020 Brassica napus HOM05D006276 ORTHO05D007724 1.3e-112 410.2 304 72.0
BcaC04g19193 Brassica carinata HOM05D006276 ORTHO05D007724 8.5e-112 407.5 306 71.2
THA.LOC104811244 Tarenaya hassleriana HOM05D006276 ORTHO05D007724 1.6e-97 360.1 311 62.4
Aa31LG3G15390 Aethionema arabicum HOM05D006276 ORTHO05D007724 2.3e-96 356.3 314 64.3
CARHR201350 Cardamine hirsuta HOM05D006276 ORTHO05D007724 3.5e-89 332.4 258 69.8
AL6G22560 Arabidopsis lyrata HOM05D006276 ORTHO05D007724 1.7e-83 313.5 248 68.1
COL.COLO4_21052 Corchorus olitorius HOM05D006276 ORTHO05D007724 1.1e-77 294.3 316 52.8
RcHm_v2.0_Chr6g0290791 Rosa chinensis HOM05D006276 ORTHO05D007724 5.2e-77 292.0 315 51.1
RcHm_v2.0_Chr6g0310851 Rosa chinensis HOM05D006276 ORTHO05D007724 9.8e-76 287.7 315 51.1
Hma1.2p1_0482F.1_g162490 Hydrangea macrophylla HOM05D006276 ORTHO05D007724 1.6e-73 280.4 315 48.9
MD15G1060500 Malus domestica HOM05D006276 ORTHO05D007724 4.6e-73 278.9 307 50.2
QL02p001268 Quercus lobata HOM05D006276 ORTHO05D007724 4.6e-73 278.9 318 46.9
Thecc.09G053300 Theobroma cacao HOM05D006276 ORTHO05D007724 4.6e-73 278.9 322 49.1
Duzib168G0463 Durio zibethinus HOM05D006276 ORTHO05D007724 6.0e-73 278.5 322 50.3
TAR383G0425 Trochodendron aralioides HOM05D006276 ORTHO05D007724 1.7e-72 276.9 319 48.3
FvH4_2g31970 Fragaria vesca HOM05D006276 ORTHO05D007724 5.1e-72 275.4 317 49.8
CANSAT25G3436 Cannabis sativa HOM05D006276 ORTHO05D007724 3.3e-71 272.7 312 51.3
Dinv27981 Davidia involucrata HOM05D006276 ORTHO05D007724 3.3e-71 272.7 316 48.4
Manes.16G079900 Manihot esculenta HOM05D006276 ORTHO05D007724 5.6e-71 271.9 317 48.9
CsaV3_2G025580 Cucumis sativus L. HOM05D006276 ORTHO05D007724 9.5e-71 271.2 317 48.9
Cc08_g10550 Coffea canephora HOM05D006276 ORTHO05D007724 2.1e-70 270.0 312 47.8
PGSC0003DMG400025517 Solanum tuberosum HOM05D006276 ORTHO05D007724 2.8e-70 269.6 314 46.2
TAR626G0576 Trochodendron aralioides HOM05D006276 ORTHO05D007724 2.8e-70 269.6 322 46.3
GSVIVG01035412001 Vitis vinifera HOM05D006276 ORTHO05D007724 2.8e-70 269.6 325 48.0
Ciclev10008931m.g Citrus clementina HOM05D006276 ORTHO05D007724 4.7e-70 268.9 323 49.2
TWI34G0536 Tripterygium wilfordii HOM05D006276 ORTHO05D007724 4.7e-70 268.9 314 48.4
Sed0008348 Sechium edule HOM05D006276 ORTHO05D007724 1.1e-69 267.7 315 47.9
MD08G1060900 Malus domestica HOM05D006276 ORTHO05D007724 1.4e-69 267.3 305 50.2
Peaxi162Scf00247g00720 Petunia axillaris HOM05D006276 ORTHO05D007724 1.4e-69 267.3 316 47.2
Solyc11g070020.3 Solanum lycopersicum HOM05D006276 ORTHO05D007724 1.8e-69 266.9 314 45.9
Sopen11g028700 Solanum pennellii HOM05D006276 ORTHO05D007724 1.8e-69 266.9 314 45.9
CiPaw.16G028900 Carya illinoinensis HOM05D006276 ORTHO05D007724 2.3e-69 266.5 318 48.7
ClCG08G017020 Citrullus lanatus HOM05D006276 ORTHO05D007724 3.1e-69 266.2 317 48.3
Eucgr.C03044 Eucalyptus grandis HOM05D006276 ORTHO05D007724 6.8e-69 265.0 323 48.3
Sed0014483 Sechium edule HOM05D006276 ORTHO05D007724 1.2e-68 264.2 317 48.3
Potri.006G230000 Populus trichocarpa HOM05D006276 ORTHO05D007724 2.0e-68 263.5 321 46.7
Lj7A273T8 Lonicera japonica HOM05D006276 ORTHO05D007724 3.4e-68 262.7 314 47.8
DCAR_004430 Daucus carota HOM05D006276 ORTHO05D007724 7.5e-68 261.5 317 47.0
Phvul.001G034700 Phaseolus vulgaris HOM05D006276 ORTHO05D007724 7.5e-68 261.5 313 49.5
Gorai.009G045400 Gossypium raimondii HOM05D006276 ORTHO05D007724 9.9e-68 261.2 317 46.7
VMungo0647G0182 Vigna mungo HOM05D006276 ORTHO05D007724 1.3e-67 260.8 313 48.6
Rhsim07G0142500 Rhododendron simsii HOM05D006276 ORTHO05D007724 2.2e-67 260.0 313 47.6
Glyma.17G229400 Glycine max HOM05D006276 ORTHO05D007724 3.7e-67 259.2 312 47.4
Atru.chr7.1056 Acer truncatum HOM05D006276 ORTHO05D007724 4.9e-67 258.8 319 46.4
Nitab4.5_0003550g0010 Nicotiana tabacum HOM05D006276 ORTHO05D007724 4.9e-67 258.8 314 45.9
Actinidia01190 Actinidia chinensis HOM05D006276 ORTHO05D007724 8.3e-67 258.1 314 45.2
Actinidia18190 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.9e-66 256.9 310 47.1
Nitab4.5_0001107g0140 Nicotiana tabacum HOM05D006276 ORTHO05D007724 7.1e-66 255.0 314 45.2
Lj5g0000642 Lotus japonicus HOM05D006276 ORTHO05D007724 1.2e-65 254.2 306 46.7
PSO210G2260 Papaver somniferum HOM05D006276 ORTHO05D007724 1.2e-65 254.2 317 45.7
Sabra06G0178200 Salix brachista HOM05D006276 ORTHO05D007724 4.6e-65 252.3 365 42.2
Aqoxy5G01259 Aquilegia oxysepala HOM05D006276 ORTHO05D007724 7.8e-65 251.5 318 44.3
Lsat_1_v5_gn_3_24381 Lactuca sativa HOM05D006276 ORTHO05D007724 7.8e-65 251.5 315 47.6
PSO210G3453 Papaver somniferum HOM05D006276 ORTHO05D007724 1.7e-64 250.4 318 44.0
Actinidia14712 Actinidia chinensis HOM05D006276 ORTHO05D007724 1.5e-63 247.3 310 45.8
arahy.Tifrunner.gnm1.ann1.C6FL8N Arachis hypogaea HOM05D006276 ORTHO05D007724 3.3e-63 246.1 317 47.3
Haze_18196 Corylus avellana HOM05D006276 ORTHO05D007724 4.3e-63 245.7 317 47.3
Migut.E01562 Erythranthe guttata HOM05D006276 ORTHO05D007724 4.3e-63 245.7 311 43.7
SalBow1G4959 Salvia bowleyana HOM05D006276 ORTHO05D007724 4.3e-63 245.7 325 45.8
Medtr1g016410 Medicago truncatula HOM05D006276 ORTHO05D007724 1.2e-62 244.2 323 46.4
Hund19457 Selenicereus undatus HOM05D006276 ORTHO05D007724 1.2e-62 244.2 313 46.6
TPR.G13142 Trifolium pratense HOM05D006276 ORTHO05D007724 2.1e-62 243.4 318 46.9
arahy.Tifrunner.gnm1.ann1.PS3ZFP Arachis hypogaea HOM05D006276 ORTHO05D007724 2.8e-62 243.0 318 47.2
EL10Ac2g03891 Beta vulgaris HOM05D006276 ORTHO05D007724 3.6e-62 242.7 312 45.2
FAN24G2654 Fragaria x ananassa HOM05D006276 ORTHO05D007724 3.6e-62 242.7 392 40.3
HanXRQChr17g0538201 Helianthus annuus HOM05D006276 ORTHO05D007724 8.1e-62 241.5 315 45.7
Lalb_Chr14g0367711 Lupinus albus HOM05D006276 ORTHO05D007724 1.1e-61 241.1 321 47.4
SGA_v2.0_scaffold169G38688 Striga asiatica HOM05D006276 ORTHO05D007724 6.8e-61 238.4 314 43.9
MSTRG.11659 Avicennia marina HOM05D006276 ORTHO05D007724 1.5e-60 237.3 312 43.6
SHI18737 Sapria himalayana HOM05D006276 ORTHO05D007724 4.4e-60 235.7 310 46.1
Ca_13170_v3 Cicer arietinum L. HOM05D006276 ORTHO05D007724 1.3e-59 234.2 317 44.8
Gohir.D05G044300 Gossypium hirsutum HOM05D006276 ORTHO05D007724 4.9e-59 232.3 314 43.9
Oeu003983.2 Olea europaea HOM05D006276 ORTHO05D007724 2.4e-58 229.9 314 43.6
AUR62022071 Chenopodium quinoa HOM05D006276 ORTHO05D007724 5.4e-58 228.8 310 45.5
PSO782G4309 Papaver somniferum HOM05D006276 ORTHO05D007724 4.6e-57 225.7 301 45.2
MELO3C010755.2 Cucumis melo HOM05D006276 ORTHO05D007724 3.3e-55 219.5 306 43.8
FAN15G3491 Fragaria x ananassa HOM05D006276 ORTHO05D007724 1.3e-54 217.6 436 35.3
PSO478G1664 Papaver somniferum HOM05D006276 ORTHO05D007724 1.1e-53 214.5 329 39.5
AUR62009155 Chenopodium quinoa HOM05D006276 ORTHO05D007724 3.1e-53 213.0 333 42.0
HPP92_004831 Vanilla planifolia HOM05D006276 ORTHO05D007724 2.0e-52 210.3 325 40.6
CDE06G0120 Ceratophyllum demersum HOM05D006276 ORTHO05D007724 6.4e-51 205.3 328 40.9
PGR044G2277 Punica granatum HOM05D006276 ORTHO05D007724 6.0e-49 198.7 295 44.7
Prupe.1G412500 Prunus persica HOM05D006276 ORTHO05D007724 3.0e-48 196.4 229 48.9
Sc09g0009760 Simmondsia chinensis HOM05D006276 ORTHO05D007724 3.3e-47 193.0 292 39.4
CiPaw.15G039400 Carya illinoinensis HOM05D006276 ORTHO05D007724 1.6e-46 190.7 316 39.6
Cpa.g.sc7.176 Carica papaya HOM05D006276 ORTHO05D007724 1.8e-45 187.2 228 48.7
Cfa017950 Carpinus fangiana HOM05D006276 ORTHO05D007724 1.2e-44 184.5 241 43.6
vmacro14246 Vaccinium macrocarpon HOM05D006276 ORTHO05D007724 1.5e-44 184.1 266 41.0
Gohir.A05G042600 Gossypium hirsutum HOM05D006276 ORTHO05D007724 2.0e-44 183.7 243 44.0
Os02g0135600 Oryza sativa ssp. japonica HOM05D006276 ORTHO05D007724 2.0e-44 183.7 338 36.4
ATR0564G292 Amborella trichopoda HOM05D006276 ORTHO05D007724 7.6e-44 181.8 298 38.6
Zm00001eb231620 Zea mays HOM05D006276 ORTHO05D007724 3.8e-43 179.5 334 36.5
CSS0027263 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.4e-42 177.6 257 42.0
Nn3g20166 Nelumbo nucifera HOM05D006276 ORTHO05D007724 1.2e-41 174.5 275 37.5
FAN20G3006 Fragaria x ananassa HOM05D006276 ORTHO05D007724 2.3e-40 170.2 291 38.8
Glyma.14G094000 Glycine max HOM05D006276 ORTHO05D007724 3.0e-40 169.9 241 42.7
AagrBONN_evm.TU.Sc2ySwM_117.3789 Anthoceros agrestis HOM05D006276 ORTHO05D007724 5.1e-40 169.1 329 34.0
Pp3c1_29470 Physcomitrium patens HOM05D006276 ORTHO05D007724 1.5e-39 167.5 320 37.5
SEGI_30057 Sequoiadendron giganteum HOM05D006276 ORTHO05D007724 9.6e-39 164.9 320 35.6
Pp3c14_20160 Physcomitrium patens HOM05D006276 ORTHO05D007724 3.7e-38 162.9 325 37.5
Mapoly0103s0015 Marchantia polymorpha HOM05D006276 ORTHO05D007724 1.2e-36 157.9 317 32.2
Ah.10g034420 Amaranthus hybridus HOM05D006276 ORTHO05D007724 9.3e-34 148.3 302 34.4
SMO117G0325 Selaginella moellendorffii HOM05D006276 ORTHO05D007724 2.1e-33 147.1 305 34.4
FAN27G2524 Fragaria x ananassa HOM05D006276 ORTHO05D007724 3.5e-33 146.4 389 30.1
CDE04G1132 Ceratophyllum demersum HOM05D000032 ORTHO05D002561 6.0e-33 145.6 280 36.1
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 6.0e-33 145.6 218 41.3
Lj7P276T14 Lonicera japonica HOM05D006276 ORTHO05D007724 1.1e-31 141.4 164 50.6
Thecc.08G113900 Theobroma cacao HOM05D006276 ORTHO05D007724 4.8e-30 136.0 209 40.7
PSO210G7329 Papaver somniferum HOM05D006276 ORTHO05D007724 1.1e-26 124.8 223 37.2
Psat6g020720 Pisum sativum HOM05D006276 ORTHO05D007724 9.0e-21 105.1 194 38.7
CARHR201360 Cardamine hirsuta HOM05D006276 ORTHO05D007724 1.7e-14 84.3 46 89.1
Oeu018645.1 Olea europaea HOM05D006276 ORTHO05D007724 1.1e-13 81.6 55 67.3
CSS0023315 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.4e-13 81.3 50 70.0
CSS0029180 Camellia sinensis var. sinensis HOM05D006276 ORTHO05D007724 1.4e-13 81.3 50 70.0
Lj7A276T16 Lonicera japonica HOM05D006276 ORTHO05D007724 5.0e-11 72.8 57 57.9


User provided reference genes

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