Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2729.1 1385 100.0
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2725.3 1385 99.8
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2723.7 1385 99.7
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2702.9 1383 99.2
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2702.9 1383 99.2
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2622.0 1383 95.8
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2608.2 1383 95.1
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2603.5 1383 94.8
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2594.7 1383 94.1
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2593.5 1383 94.3
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2592.8 1383 94.1
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2551.5 1385 93.1
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2427.5 1384 87.5
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2426.7 1384 87.4
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2426.7 1384 87.5
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2423.3 1384 87.3
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2422.9 1385 87.4
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2422.1 1384 87.1
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2421.7 1385 87.4
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2419.4 1383 87.6
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2416.7 1388 86.7
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2416.0 1384 87.0
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2415.2 1389 86.5
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2413.3 1384 87.4
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2410.6 1384 86.6
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2409.4 1384 86.8
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2408.6 1384 86.3
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2407.9 1384 87.2
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2407.5 1388 86.2
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2407.5 1384 86.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2406.3 1385 86.4
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2404.4 1385 86.6
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2404.4 1384 86.7
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2404.0 1385 86.6
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2402.5 1384 86.2
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2402.1 1385 86.6
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2402.1 1384 86.7
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2401.7 1384 85.8
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2400.2 1385 86.3
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2400.2 1384 86.6
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2399.8 1384 86.4
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2399.4 1384 86.6
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2399.0 1384 85.7
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2399.0 1384 86.1
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2398.6 1384 86.3
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2398.2 1399 85.3
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2397.9 1386 86.2
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2397.9 1384 86.6
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2397.1 1388 86.2
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2396.3 1384 86.1
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2395.9 1388 86.2
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2394.8 1384 86.1
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2394.0 1386 86.1
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2393.6 1384 86.0
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2393.2 1384 85.8
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2392.8 1384 86.1
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2392.5 1385 86.4
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2392.1 1384 85.8
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2390.1 1383 85.5
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2387.8 1384 85.7
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2387.1 1449 82.8
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2385.9 1384 85.7
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2385.1 1384 86.3
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2384.4 1386 85.9
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2384.0 1384 85.7
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2383.2 1385 85.8
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2381.7 1384 85.8
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2381.7 1384 85.8
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2380.9 1384 85.7
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2380.5 1384 85.5
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2379.7 1399 84.8
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2379.7 1387 85.5
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2377.1 1384 84.7
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2377.1 1387 85.4
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2377.1 1386 85.4
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2376.7 1385 85.2
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2376.7 1382 85.4
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2375.5 1385 85.6
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2370.1 1384 84.8
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2368.2 1385 84.8
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2367.8 1384 86.0
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2365.5 1337 87.3
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2365.1 1398 84.3
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2363.6 1411 83.8
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2350.1 1356 85.8
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2349.7 1384 84.2
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2347.0 1384 84.0
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2344.3 1384 85.2
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2337.4 1385 84.8
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2305.4 1385 83.1
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2305.0 1389 83.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2301.2 1384 83.6
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2290.0 1385 82.5
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2276.9 1384 81.5
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2259.6 1384 81.8
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2254.6 1350 82.1
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2228.0 1384 80.9
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2221.4 1410 80.2
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 2177.1 1262 86.3
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2175.2 1349 78.7
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 2173.3 1261 85.5
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2172.9 1332 79.6
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2159.4 1336 78.1
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2159.0 1336 78.6
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2159.0 1336 78.6
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2145.9 1262 85.0
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2125.1 1349 76.2
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 2116.7 1351 79.3
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1908.6 1121 84.8
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1891.7 1380 72.3
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1888.2 1109 84.6
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1880.9 1334 68.9
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1836.6 1335 67.9
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1801.2 1402 69.5
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1657.1 986 83.5
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1649.4 913 88.8
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1610.5 896 89.2
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1460.3 809 88.8
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1455.7 808 88.4
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1131.3 690 82.3
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 0.0e+00 1097.4 677 81.2
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 4.2e-302 1042.0 671 79.3
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.6e-293 1013.4 571 85.5
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 2.3e-263 913.3 1203 44.1
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 4.6e-256 889.0 588 76.0
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 8.1e-253 878.2 472 95.8
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 7.6e-219 765.4 472 82.6
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 6.2e-213 745.7 474 80.2
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 1.4e-212 744.6 472 80.1
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 6.1e-200 702.6 399 85.7
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 1.9e-177 627.9 1382 32.1
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 3.7e-157 560.5 1468 29.8
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 2.0e-110 405.2 1276 27.7
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.2e-86 326.2 175 90.9
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 1.2e-67 263.1 151 84.8
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.0e-58 233.4 123 89.4
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 2.3e-42 179.1 107 85.0
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 2.6e-41 175.6 175 57.1
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 1.7e-29 136.3 139 50.4
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 7.3e-28 131.0 99 66.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 8.0e-27 127.5 91 71.4
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 1.4e-18 100.1 59 81.4


User provided reference genes

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