Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02212 Brassica carinata HOM05D002502 ORTHO05D014835 6.0e-109 397.5 199 100.0
BcaB07g30312 Brassica carinata HOM05D002502 ORTHO05D014835 3.6e-61 238.8 186 69.9
AT3G23860 Arabidopsis thaliana HOM05D002502 ORTHO05D014835 1.8e-20 103.6 171 38.6
AL3G21950 Arabidopsis lyrata HOM05D002502 ORTHO05D014835 2.0e-19 100.1 230 33.5
AL3G22350 Arabidopsis lyrata HOM05D002502 ORTHO05D014835 2.7e-16 89.7 134 38.8
Thhalv10021429m.g Eutrema salsugineum HOM05D002502 ORTHO05D014835 5.9e-16 88.6 138 37.7
Thhalv10021432m.g Eutrema salsugineum HOM05D002502 ORTHO05D014835 5.9e-16 88.6 138 37.7
PSO478G3145 Papaver somniferum HOM05D002502 ORTHO05D003592 2.3e-12 76.6 108 38.0
Thhalv10009840m.g Eutrema salsugineum HOM05D002502 ORTHO05D014835 5.2e-12 75.5 95 43.2
Prupe.5G046000 Prunus persica HOM05D002502 ORTHO05D003592 6.8e-12 75.1 106 38.7
FAN05G4108 Fragaria x ananassa HOM05D002502 ORTHO05D003592 8.9e-12 74.7 108 38.9
FvH4_6g37740 Fragaria vesca HOM05D002502 ORTHO05D003592 1.5e-11 73.9 108 38.9
PSO170G2022 Papaver somniferum HOM05D002502 ORTHO05D003592 1.5e-11 73.9 108 38.0
PSO455G0171 Papaver somniferum HOM05D002502 ORTHO05D003592 1.5e-11 73.9 108 38.0
PSO761G0496 Papaver somniferum HOM05D002502 ORTHO05D003592 1.5e-11 73.9 108 38.0
Carub.0001s0396 Capsella rubella HOM05D002502 ORTHO05D003592 4.4e-11 72.4 108 37.0
CARHR004090 Cardamine hirsuta HOM05D002502 ORTHO05D003592 4.4e-11 72.4 108 37.0
Cpa.g.sc84.61 Carica papaya HOM05D002502 ORTHO05D003592 4.4e-11 72.4 106 37.7
FvH4_3g28930 Fragaria vesca HOM05D002502 ORTHO05D003592 4.4e-11 72.4 108 37.0
FAN11G1940 Fragaria x ananassa HOM05D002502 ORTHO05D003592 4.4e-11 72.4 108 37.0
FAN16G0533 Fragaria x ananassa HOM05D002502 ORTHO05D003592 4.4e-11 72.4 108 37.0
FAN21G3969 Fragaria x ananassa HOM05D002502 ORTHO05D003592 4.4e-11 72.4 108 37.0
RcHm_v2.0_Chr5g0051831 Rosa chinensis HOM05D002502 ORTHO05D003592 4.4e-11 72.4 108 37.0
Atru.chr11.1457 Acer truncatum HOM05D002502 ORTHO05D003592 5.8e-11 72.0 106 37.7
Atru.chr11.1490 Acer truncatum HOM05D002502 ORTHO05D003592 5.8e-11 72.0 106 37.7
Atru.chr3.2732 Acer truncatum HOM05D002502 ORTHO05D003592 5.8e-11 72.0 106 37.7
Aqoxy1G00533 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 7.5e-11 71.6 108 37.0
Lj2g0010803 Lotus japonicus HOM05D002502 ORTHO05D003592 7.5e-11 71.6 106 37.7
Manes.14G002300 Manihot esculenta HOM05D002502 ORTHO05D003592 7.5e-11 71.6 106 37.7
Nitab4.5_0009394g0010 Nicotiana tabacum HOM05D002502 ORTHO05D003592 7.5e-11 71.6 106 37.7
unitig_749.g14333 Utricularia gibba HOM05D002502 ORTHO05D003592 7.5e-11 71.6 113 36.3
Aqoxy3G02133 Aquilegia oxysepala HOM05D002502 ORTHO05D003592 9.8e-11 71.2 108 36.1
A10p03140 Brassica napus HOM05D002502 ORTHO05D003592 9.8e-11 71.2 108 36.1
BraA10t42587Z Brassica rapa HOM05D002502 ORTHO05D003592 9.8e-11 71.2 108 36.1
CAN.G209.22 Capsicum annuum HOM05D002502 ORTHO05D003592 9.8e-11 71.2 106 36.8
CAN.G700.14 Capsicum annuum HOM05D002502 ORTHO05D003592 9.8e-11 71.2 106 36.8
QL02p019362 Quercus lobata HOM05D002502 ORTHO05D003592 9.8e-11 71.2 108 36.1
QL06p021110 Quercus lobata HOM05D002502 ORTHO05D003592 9.8e-11 71.2 108 36.1
QL10p058875 Quercus lobata HOM05D002502 ORTHO05D003592 9.8e-11 71.2 108 36.1
RcHm_v2.0_Chr3g0491451 Rosa chinensis HOM05D002502 ORTHO05D003592 9.8e-11 71.2 108 37.0
Solyc01g081010.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 9.8e-11 71.2 106 36.8
Sopen01g032590 Solanum pennellii HOM05D002502 ORTHO05D003592 9.8e-11 71.2 106 36.8
Sopen07g027710 Solanum pennellii HOM05D002502 ORTHO05D003592 9.8e-11 71.2 106 36.8
PGSC0003DMG400026818 Solanum tuberosum HOM05D002502 ORTHO05D003592 9.8e-11 71.2 106 36.8
Aa31LG1G8620 Aethionema arabicum HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
AL1G14420 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
AT1G50920 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 37.0
BcaB03g13475 Brassica carinata HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
BcaC07g36887 Brassica carinata HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
A08p36740 Brassica napus HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
C05p02910 Brassica napus HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
C08p01410 Brassica napus HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
BolC5t29072H Brassica oleracea HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
BolC8t46950H Brassica oleracea HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
BraA08t35576Z Brassica rapa HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
ClCG08G017240 Citrullus lanatus HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 37.0
MELO3C010735.2 Cucumis melo HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 37.0
CsaV3_2G025380 Cucumis sativus L. HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 37.0
Thhalv10006811m.g Eutrema salsugineum HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
Potri.009G054000 Populus trichocarpa HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
Sp1g03550 Schrenkiella parvula HOM05D002502 ORTHO05D003592 1.3e-10 70.9 108 36.1
Hund11875 Selenicereus undatus HOM05D002502 ORTHO05D003592 1.3e-10 70.9 106 38.7
Ciclev10004477m.g Citrus clementina HOM05D002502 ORTHO05D003592 1.7e-10 70.5 106 37.7
COL.COLO4_09008 Corchorus olitorius HOM05D002502 ORTHO05D003592 1.7e-10 70.5 106 36.8
Duzib170G0594 Durio zibethinus HOM05D002502 ORTHO05D003592 1.7e-10 70.5 106 36.8
Migut.L01444 Erythranthe guttata HOM05D002502 ORTHO05D003592 1.7e-10 70.5 108 36.1
Gohir.A02G105700 Gossypium hirsutum HOM05D002502 ORTHO05D003592 1.7e-10 70.5 106 36.8
Manes.06G164900 Manihot esculenta HOM05D002502 ORTHO05D003592 1.7e-10 70.5 106 36.8
Peaxi162Scf00592g00003 Petunia axillaris HOM05D002502 ORTHO05D003592 1.7e-10 70.5 106 36.8
Sed0022629 Sechium edule HOM05D002502 ORTHO05D003592 1.7e-10 70.5 108 36.1
Thecc.05G189100 Theobroma cacao HOM05D002502 ORTHO05D003592 1.7e-10 70.5 106 36.8
BcaC07g36841 Brassica carinata HOM05D030649 ORTHO05D014835 2.2e-10 70.1 106 39.6
C08p02130 Brassica napus HOM05D030649 ORTHO05D014835 2.2e-10 70.1 106 39.6
Gorai.003G086000 Gossypium raimondii HOM05D002502 ORTHO05D003592 2.2e-10 70.1 106 35.8
HanXRQChr11g0323631 Helianthus annuus HOM05D002502 ORTHO05D003592 2.2e-10 70.1 108 36.1
HanXRQChr15g0476651 Helianthus annuus HOM05D002502 ORTHO05D003592 2.2e-10 70.1 108 36.1
Lj4g0022659 Lotus japonicus HOM05D002502 ORTHO05D003592 2.2e-10 70.1 106 36.8
VMungo1127G1321 Vigna mungo HOM05D002502 ORTHO05D003592 2.2e-10 70.1 106 37.7
arahy.Tifrunner.gnm1.ann1.IM6CL8 Arachis hypogaea HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 37.7
arahy.Tifrunner.gnm1.ann1.P2GJLH Arachis hypogaea HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 37.7
arahy.Tifrunner.gnm1.ann1.UDT6NA Arachis hypogaea HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 37.7
arahy.Tifrunner.gnm1.ann1.VUX1YY Arachis hypogaea HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 37.7
CANSAT01G0379 Cannabis sativa HOM05D002502 ORTHO05D003592 2.9e-10 69.7 108 36.1
CANSAT78G2062 Cannabis sativa HOM05D002502 ORTHO05D003592 2.9e-10 69.7 108 36.1
Cpa.g.c38405.1 Carica papaya HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 36.8
Cfa010283 Carpinus fangiana HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 35.8
Haze_00984 Corylus avellana HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 35.8
Haze_01417 Corylus avellana HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 35.8
Haze_23131 Corylus avellana HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 35.8
Glyma.11G133600 Glycine max HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 37.7
Glyma.12G057800 Glycine max HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 37.7
Lsat_1_v5_gn_8_160141 Lactuca sativa HOM05D002502 ORTHO05D003592 2.9e-10 69.7 108 36.1
Potri.001G258900 Populus trichocarpa HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 36.8
SalBow2G0269 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 35.8
SalBow2G2645 Salvia bowleyana HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 35.8
Sc09g0008300 Simmondsia chinensis HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 37.7
TAR376G0056 Trochodendron aralioides HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 36.8
GSVIVG01025272001 Vitis vinifera HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 35.8
Zm00001eb373990 Zea mays HOM05D002502 ORTHO05D003592 2.9e-10 69.7 106 37.7
DCAR_007102 Daucus carota HOM05D002502 ORTHO05D003592 3.7e-10 69.3 108 36.1
Lsat_1_v5_gn_8_160220 Lactuca sativa HOM05D002502 ORTHO05D003592 3.7e-10 69.3 108 36.1
Lj8C580T7 Lonicera japonica HOM05D002502 ORTHO05D003592 3.7e-10 69.3 108 36.1
Medtr8g018150 Medicago truncatula HOM05D002502 ORTHO05D003592 3.7e-10 69.3 108 37.0
Phvul.011G059700 Phaseolus vulgaris HOM05D002502 ORTHO05D003592 3.7e-10 69.3 106 37.7
Psat5g297560 Pisum sativum HOM05D002502 ORTHO05D003592 3.7e-10 69.3 108 37.0
PGR119G0499 Punica granatum HOM05D002502 ORTHO05D003592 3.7e-10 69.3 106 36.8
TPR.G9217 Trifolium pratense HOM05D002502 ORTHO05D003592 3.7e-10 69.3 108 37.0
GSVIVG01034588001 Vitis vinifera HOM05D002502 ORTHO05D003592 3.7e-10 69.3 106 35.8
EL10Ac7g16892 Beta vulgaris HOM05D002502 ORTHO05D003592 4.9e-10 68.9 106 36.8
CiPaw.06G008400 Carya illinoinensis HOM05D002502 ORTHO05D003592 4.9e-10 68.9 106 35.8
CiPaw.13G161500 Carya illinoinensis HOM05D002502 ORTHO05D003592 4.9e-10 68.9 106 35.8
COL.COLO4_33612 Corchorus olitorius HOM05D002502 ORTHO05D003592 4.9e-10 68.9 104 39.4
Duzib168G1518 Durio zibethinus HOM05D002502 ORTHO05D003592 4.9e-10 68.9 106 35.8
Gohir.D03G078100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 4.9e-10 68.9 106 34.9
MBI17_g08352_MAGBIO Magnolia biondii HOM05D002502 ORTHO05D003592 4.9e-10 68.9 106 35.8
RcHm_v2.0_Chr5g0051911 Rosa chinensis HOM05D002502 ORTHO05D003592 4.9e-10 68.9 113 36.3
Solyc07g053730.4 Solanum lycopersicum HOM05D002502 ORTHO05D003592 4.9e-10 68.9 106 35.8
SGA_v2.0_scaffold166G38342 Striga asiatica HOM05D002502 ORTHO05D003592 4.9e-10 68.9 106 35.8
THA.LOC104799100 Tarenaya hassleriana HOM05D002502 ORTHO05D003592 4.9e-10 68.9 106 36.8
ATR0772G044 Amborella trichopoda HOM05D002502 ORTHO05D003592 6.4e-10 68.6 106 35.8
MSTRG.7874 Avicennia marina HOM05D002502 ORTHO05D003592 6.4e-10 68.6 106 35.8
EL10Ac8g18494 Beta vulgaris HOM05D002502 ORTHO05D003592 6.4e-10 68.6 106 36.8
BcaB08g35552 Brassica carinata HOM05D030649 ORTHO05D014835 6.4e-10 68.6 100 42.0
Ah.09g232260 Amaranthus hybridus HOM05D002502 ORTHO05D003592 8.3e-10 68.2 106 36.8
Ah.16g104080 Amaranthus hybridus HOM05D002502 ORTHO05D003592 8.3e-10 68.2 106 36.8
CSS0041556 Camellia sinensis var. sinensis HOM05D002502 ORTHO05D003592 8.3e-10 68.2 106 35.8
Cc11_g14270 Coffea canephora HOM05D002502 ORTHO05D003592 8.3e-10 68.2 106 35.8
Gohir.A12G115100 Gossypium hirsutum HOM05D002502 ORTHO05D003592 8.3e-10 68.2 106 35.8
Lj4P468T8 Lonicera japonica HOM05D002502 ORTHO05D003592 8.3e-10 68.2 108 35.2
Oeu025445.1 Olea europaea HOM05D002502 ORTHO05D003592 8.3e-10 68.2 106 35.8
ATR0763G231 Amborella trichopoda HOM05D002502 ORTHO05D003592 1.1e-09 67.8 106 34.9
CDE04G3381 Ceratophyllum demersum HOM05D002502 ORTHO05D003592 1.1e-09 67.8 106 35.8
MD16G1277600 Malus domestica HOM05D002502 ORTHO05D003592 1.1e-09 67.8 106 35.8
Nn5g27606 Nelumbo nucifera HOM05D002502 ORTHO05D003592 1.1e-09 67.8 106 35.8
Oeu028550.1 Olea europaea HOM05D002502 ORTHO05D003592 1.1e-09 67.8 114 34.2
Prupe.4G247400 Prunus persica HOM05D002502 ORTHO05D003592 1.1e-09 67.8 106 35.8
Prupe.5G045700 Prunus persica HOM05D002502 ORTHO05D003592 1.1e-09 67.8 106 35.8
TWI34G1958 Tripterygium wilfordii HOM05D002502 ORTHO05D003592 1.1e-09 67.8 106 35.8
Dinv30999 Davidia involucrata HOM05D002502 ORTHO05D003592 1.4e-09 67.4 106 34.9
Dinv31104 Davidia involucrata HOM05D002502 ORTHO05D003592 1.4e-09 67.4 106 34.9
Nn1g08184 Nelumbo nucifera HOM05D002502 ORTHO05D003592 1.4e-09 67.4 106 35.8
Psat5g237960 Pisum sativum HOM05D002502 ORTHO05D003592 1.4e-09 67.4 106 36.8
BcaC05g24913 Brassica carinata HOM05D002502 ORTHO05D003592 1.9e-09 67.0 108 35.2
Ca_04000_v3 Cicer arietinum L. HOM05D002502 ORTHO05D003592 1.9e-09 67.0 106 36.8
Ciclev10006517m.g Citrus clementina HOM05D002502 ORTHO05D003592 1.9e-09 67.0 106 36.8
Rhsim04G0188800 Rhododendron simsii HOM05D002502 ORTHO05D003592 1.9e-09 67.0 106 34.9
HPP92_002936 Vanilla planifolia HOM05D002502 ORTHO05D003592 1.9e-09 67.0 106 34.9
AL3G23770 Arabidopsis lyrata HOM05D002502 ORTHO05D017430 2.4e-09 66.6 113 32.7
AUR62015502 Chenopodium quinoa HOM05D002502 ORTHO05D003592 2.4e-09 66.6 106 36.8
ECA246G4618 Erigeron canadensis HOM05D002502 ORTHO05D003592 2.4e-09 66.6 108 35.2
Lalb_Chr03g0026331 Lupinus albus HOM05D002502 ORTHO05D003592 2.4e-09 66.6 106 35.8
Lalb_Chr19g0138101 Lupinus albus HOM05D002502 ORTHO05D003592 2.4e-09 66.6 106 35.8
SEGI_13678 Sequoiadendron giganteum HOM05D002502 ORTHO05D003592 2.4e-09 66.6 106 34.0
AUR62039750 Chenopodium quinoa HOM05D002502 ORTHO05D003592 3.2e-09 66.2 106 36.8
BcaC09g48263 Brassica carinata HOM05D002502 ORTHO05D024091 4.1e-09 65.9 132 31.8
AUR62039964 Chenopodium quinoa HOM05D002502 ORTHO05D003592 4.1e-09 65.9 106 36.8
MD06G1031200 Malus domestica HOM05D002502 ORTHO05D003592 4.1e-09 65.9 106 35.8
Prupe.6G149400 Prunus persica HOM05D002502 ORTHO05D003592 4.1e-09 65.9 106 33.0
HPP92_004879 Vanilla planifolia HOM05D002502 ORTHO05D003592 4.1e-09 65.9 106 35.8
AT1G10300 Arabidopsis thaliana HOM05D002502 ORTHO05D003592 5.4e-09 65.5 108 35.2
Cre10.g459500 Chlamydomonas reinhardtii HOM05D002502 ORTHO05D003592 5.4e-09 65.5 99 36.4
A06p06930 Brassica napus HOM05D002502 ORTHO05D003592 7.0e-09 65.1 108 32.4
Pp3c23_20710 Physcomitrium patens HOM05D002502 ORTHO05D003592 7.0e-09 65.1 108 33.3
SHI29761 Sapria himalayana HOM05D002502 ORTHO05D003592 7.0e-09 65.1 106 34.0
Pp3c20_4830 Physcomitrium patens HOM05D002502 ORTHO05D003592 9.2e-09 64.7 108 33.3
Sed0022998 Sechium edule HOM05D002502 ORTHO05D003592 9.2e-09 64.7 108 33.3
SMO147G0287 Selaginella moellendorffii HOM05D002502 ORTHO05D003592 9.2e-09 64.7 106 34.0
AL1G21030 Arabidopsis lyrata HOM05D002502 ORTHO05D003592 1.2e-08 64.3 108 34.3
PRCOL_00004008 Prasinoderma coloniale HOM05D002502 ORTHO05D003592 1.2e-08 64.3 104 35.6
AagrBONN_evm.TU.Sc2ySwM_117.2548 Anthoceros agrestis HOM05D002502 ORTHO05D003592 1.6e-08 63.9 106 34.0
MCO16G373 Micromonas commoda HOM05D002502 ORTHO05D003592 2.0e-08 63.5 108 32.4
Carub.0003s1007 Capsella rubella HOM05D002502 ORTHO05D014835 3.5e-08 62.8 175 32.6
Prupe.1G572400 Prunus persica HOM05D002502 ORTHO05D003592 3.5e-08 62.8 106 34.0
vmacro20354 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 3.5e-08 62.8 106 33.0
Eucgr.F03998 Eucalyptus grandis HOM05D002502 ORTHO05D003592 4.6e-08 62.4 106 34.0
C05p08410 Brassica napus HOM05D002502 ORTHO05D003592 6.0e-08 62.0 108 32.4
MD11G1222700 Malus domestica HOM05D002502 ORTHO05D003592 1.0e-07 61.2 106 33.0
THA.LOC104824560 Tarenaya hassleriana HOM05D002502 ORTHO05D003592 1.0e-07 61.2 106 36.8
CARHR010400 Cardamine hirsuta HOM05D002502 ORTHO05D003592 1.7e-07 60.5 108 32.4
Haze_26385 Corylus avellana HOM05D002502 ORTHO05D003592 2.3e-07 60.1 106 31.1
CBR_g77869 Chara braunii HOM05D002502 ORTHO05D003592 3.0e-07 59.7 108 29.6
Mapoly0056s0118 Marchantia polymorpha HOM05D002502 ORTHO05D003592 3.0e-07 59.7 108 29.6
BraA06t23909Z Brassica rapa HOM05D002502 ORTHO05D003592 6.6e-07 58.5 119 31.1
C05p55650 Brassica napus HOM05D002502 ORTHO05D017430 1.5e-06 57.4 135 28.9
vmacro19268 Vaccinium macrocarpon HOM05D002502 ORTHO05D003592 3.3e-06 56.2 106 31.1
Carub.0001s0970 Capsella rubella HOM05D002502 ORTHO05D003592 4.3e-06 55.8 100 32.0
FAN09G0126 Fragaria x ananassa HOM05D002502 ORTHO05D003592 5.6e-06 55.5 73 43.8


User provided reference genes

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