Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01861 Brassica carinata HOM05D012894 ORTHO05D014766 7.4e-135 484.2 303 100.0
A09p25830 Brassica napus HOM05D012894 ORTHO05D014766 1.0e-112 410.6 301 86.0
BolC9t56115H Brassica oleracea HOM05D012894 ORTHO05D014766 6.7e-112 407.9 301 85.7
BraA09t38153Z Brassica rapa HOM05D012894 ORTHO05D014766 7.5e-111 404.4 301 86.0
BcaC04g21361 Brassica carinata HOM05D012894 ORTHO05D014766 1.1e-101 374.0 301 78.7
C09p32720 Brassica napus HOM05D012894 ORTHO05D014766 1.1e-101 374.0 301 78.7
Sp6g03950 Schrenkiella parvula HOM05D012894 ORTHO05D014766 7.8e-84 314.7 302 65.2
Thhalv10028855m.g Eutrema salsugineum HOM05D012894 ORTHO05D014766 8.6e-83 311.2 304 68.4
AL6G48570 Arabidopsis lyrata HOM05D012894 ORTHO05D014766 2.3e-72 276.6 325 62.5
AT4G04990 Arabidopsis thaliana HOM05D012894 ORTHO05D014766 9.9e-71 271.2 323 60.4
Carub.0006s3295 Capsella rubella HOM05D012894 ORTHO05D014766 3.8e-54 216.1 389 44.5
Aa31LG9G9450 Aethionema arabicum HOM05D012894 ORTHO05D014766 8.4e-30 135.2 311 38.3
THA.LOC104812765 Tarenaya hassleriana HOM05D012894 ORTHO05D014766 1.8e-16 90.9 302 37.4
Lj2A282T46 Lonicera japonica HOM05D001640 ORTHO05D001612 3.4e-07 60.1 177 31.6
Manes.15G083300 Manihot esculenta HOM05D001640 ORTHO05D001612 3.4e-07 60.1 110 40.0
Thhalv10023538m.g Eutrema salsugineum HOM05D001640 ORTHO05D001612 4.5e-07 59.7 39 71.8
HanXRQChr04g0125161 Helianthus annuus HOM05D001640 ORTHO05D001612 4.5e-07 59.7 43 69.8
Sp2g03200 Schrenkiella parvula HOM05D001640 ORTHO05D001612 4.5e-07 59.7 44 68.2
Aa31LG2G9360 Aethionema arabicum HOM05D001640 ORTHO05D001612 5.9e-07 59.3 39 74.4
TWI38G0775 Tripterygium wilfordii HOM05D001640 ORTHO05D001612 5.9e-07 59.3 106 35.8
vmacro03829 Vaccinium macrocarpon HOM05D001640 ORTHO05D001612 5.9e-07 59.3 43 65.1
vmacro23296 Vaccinium macrocarpon HOM05D001640 ORTHO05D001612 5.9e-07 59.3 43 65.1
AL2G15050 Arabidopsis lyrata HOM05D001640 ORTHO05D001612 7.7e-07 58.9 44 65.9
HPP92_014067 Vanilla planifolia HOM05D001640 ORTHO05D001612 1.0e-06 58.5 69 52.2
CSS0030521 Camellia sinensis var. sinensis HOM05D001640 ORTHO05D001612 1.3e-06 58.2 83 43.4
Cc05_g12660 Coffea canephora HOM05D001640 ORTHO05D001612 1.3e-06 58.2 53 56.6
MBI02_g35911_MAGBIO Magnolia biondii HOM05D001640 ORTHO05D001612 1.3e-06 58.2 113 39.8
Actinidia39410 Actinidia chinensis HOM05D001640 ORTHO05D001612 1.7e-06 57.8 125 38.4
MSTRG.7298 Avicennia marina HOM05D001640 ORTHO05D001612 1.7e-06 57.8 45 64.4
BcaC04g22319 Brassica carinata HOM05D001640 ORTHO05D001612 1.7e-06 57.8 39 69.2
C09p20720 Brassica napus HOM05D001640 ORTHO05D001612 1.7e-06 57.8 39 69.2
BolC9t54969H Brassica oleracea HOM05D001640 ORTHO05D001612 1.7e-06 57.8 39 69.2
Ciclev10016038m.g Citrus clementina HOM05D001640 ORTHO05D001612 1.7e-06 57.8 39 71.8
Lsat_1_v5_gn_7_19801 Lactuca sativa HOM05D001640 ORTHO05D001612 1.7e-06 57.8 53 60.4
Potri.011G044000 Populus trichocarpa HOM05D001640 ORTHO05D001612 1.7e-06 57.8 49 61.2
AT1G61260 Arabidopsis thaliana HOM05D001640 ORTHO05D001612 2.2e-06 57.4 44 63.6
MSTRG.15925 Avicennia marina HOM05D001640 ORTHO05D001612 2.2e-06 57.4 159 32.7
CiPaw.11G176400 Carya illinoinensis HOM05D001640 ORTHO05D001612 2.2e-06 57.4 135 34.1
CDE05G2037 Ceratophyllum demersum HOM05D001640 ORTHO05D001612 2.2e-06 57.4 56 53.6
TAR626G0635 Trochodendron aralioides HOM05D001640 ORTHO05D001612 2.2e-06 57.4 63 55.6
Lj6g0007106 Lotus japonicus HOM05D001640 ORTHO05D001612 2.9e-06 57.0 40 70.0
Nn3g16286 Nelumbo nucifera HOM05D001640 ORTHO05D001612 2.9e-06 57.0 94 43.6
Oeu055679.1 Olea europaea HOM05D001640 ORTHO05D001612 2.9e-06 57.0 38 71.1
BcaB01g04291 Brassica carinata HOM05D001640 ORTHO05D001612 3.8e-06 56.6 39 69.2
BcaB07g31271 Brassica carinata HOM05D001640 ORTHO05D001612 3.8e-06 56.6 39 66.7
ClCG10G006530 Citrullus lanatus HOM05D001640 ORTHO05D001612 3.8e-06 56.6 89 44.9
Duzib235G0541 Durio zibethinus HOM05D001640 ORTHO05D001612 3.8e-06 56.6 47 59.6
Glyma.13G281600 Glycine max HOM05D001640 ORTHO05D001612 3.8e-06 56.6 75 45.3
Sabra11G0030500 Salix brachista HOM05D001640 ORTHO05D001612 3.8e-06 56.6 44 63.6
Aqoxy1G02755 Aquilegia oxysepala HOM05D001640 ORTHO05D001612 5.0e-06 56.2 44 63.6
A01p30130 Brassica napus HOM05D001640 ORTHO05D001612 5.0e-06 56.2 109 36.7
A10p11590 Brassica napus HOM05D001640 ORTHO05D001612 5.0e-06 56.2 40 67.5
CARHR051340 Cardamine hirsuta HOM05D001640 ORTHO05D001612 5.0e-06 56.2 115 34.8
Haze_09527 Corylus avellana HOM05D001640 ORTHO05D001612 5.0e-06 56.2 133 33.1
Thhalv10014064m.g Eutrema salsugineum HOM05D001640 ORTHO05D001612 5.0e-06 56.2 114 37.7
Hma1.2p1_0144F.1_g064810 Hydrangea macrophylla HOM05D001640 ORTHO05D001612 5.0e-06 56.2 38 71.1
Lsat_1_v5_gn_4_57221 Lactuca sativa HOM05D001640 ORTHO05D001612 5.0e-06 56.2 38 71.1
Manes.03G116400 Manihot esculenta HOM05D001640 ORTHO05D001612 5.0e-06 56.2 72 48.6
Nn6g35736 Nelumbo nucifera HOM05D001640 ORTHO05D001612 5.0e-06 56.2 109 38.5
Oeu019363.1 Olea europaea HOM05D001640 ORTHO05D001612 5.0e-06 56.2 38 71.1
SGA_v2.0_scaffold159G37664 Striga asiatica HOM05D001640 ORTHO05D001612 5.0e-06 56.2 179 33.0
TAR627G0359 Trochodendron aralioides HOM05D001640 ORTHO05D001612 5.0e-06 56.2 158 33.5
AL8G29630 Arabidopsis lyrata HOM05D001640 ORTHO05D001612 6.5e-06 55.8 38 71.1
AT5G54300 Arabidopsis thaliana HOM05D001640 ORTHO05D001612 6.5e-06 55.8 38 71.1
arahy.Tifrunner.gnm1.ann1.C6SH89 Arachis hypogaea HOM05D001640 ORTHO05D001612 6.5e-06 55.8 39 69.2
arahy.Tifrunner.gnm1.ann1.CWT1SW Arachis hypogaea HOM05D001640 ORTHO05D001612 6.5e-06 55.8 39 69.2
C01p38220 Brassica napus HOM05D001640 ORTHO05D001612 6.5e-06 55.8 110 35.5
BolC1t03784H Brassica oleracea HOM05D001640 ORTHO05D001612 6.5e-06 55.8 110 35.5
Carub.0002s0389 Capsella rubella HOM05D001640 ORTHO05D001612 6.5e-06 55.8 115 34.8
Ciclev10021576m.g Citrus clementina HOM05D001640 ORTHO05D001612 6.5e-06 55.8 150 31.3
Lj3g0003756 Lotus japonicus HOM05D001640 ORTHO05D001612 6.5e-06 55.8 39 71.8
Oeu038226.1 Olea europaea HOM05D001640 ORTHO05D001612 6.5e-06 55.8 108 37.0
RcHm_v2.0_Chr5g0006611 Rosa chinensis HOM05D001640 ORTHO05D001612 6.5e-06 55.8 47 57.4
CDE05G3283 Ceratophyllum demersum HOM05D001640 ORTHO05D001612 8.5e-06 55.5 165 30.9
AUR62015603 Chenopodium quinoa HOM05D001640 ORTHO05D001612 8.5e-06 55.5 40 65.0
FAN16G3443 Fragaria x ananassa HOM05D001640 ORTHO05D001612 8.5e-06 55.5 43 60.5
FAN21G3900 Fragaria x ananassa HOM05D001640 ORTHO05D001612 8.5e-06 55.5 52 51.9
FAN25G1770 Fragaria x ananassa HOM05D001640 ORTHO05D001612 8.5e-06 55.5 43 60.5
Nn2g11887 Nelumbo nucifera HOM05D001640 ORTHO05D001612 8.5e-06 55.5 94 42.6
Nn6g35669 Nelumbo nucifera HOM05D001640 ORTHO05D001612 8.5e-06 55.5 94 42.6
RcHm_v2.0_Chr5g0035351 Rosa chinensis HOM05D001640 ORTHO05D001612 8.5e-06 55.5 103 39.8


User provided reference genes

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