Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 2.9e-76 288.5 149 100.0
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 2.7e-69 265.4 158 88.6
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 5.0e-68 261.2 158 87.3
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 1.1e-67 260.0 158 86.7
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 1.1e-67 260.0 158 86.7
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 2.5e-67 258.8 158 86.1
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 3.2e-67 258.5 158 86.1
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 3.2e-67 258.5 158 86.1
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 9.5e-67 256.9 159 86.8
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 9.5e-67 256.9 158 85.4
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 9.5e-67 256.9 158 85.4
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-66 256.5 158 86.1
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.2e-66 256.5 158 86.1
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 2.1e-66 255.8 158 85.4
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.0e-65 253.4 158 84.8
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.2e-64 250.0 187 74.9
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 4.9e-63 244.6 158 84.2
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 1.1e-62 243.4 166 78.9
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 5.4e-62 241.1 187 72.7
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 2.4e-54 215.7 155 71.0
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 1.7e-52 209.5 153 70.6
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 1.7e-52 209.5 153 70.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 5.0e-52 208.0 158 69.0
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 5.0e-52 208.0 158 69.0
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 3.3e-51 205.3 158 68.4
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 4.3e-51 204.9 158 69.6
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 1.6e-50 203.0 143 73.4
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 2.1e-50 202.6 151 70.2
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 8.0e-50 200.7 143 72.7
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 3.1e-49 198.7 158 69.0
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 3.1e-49 198.7 163 66.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 4.4e-48 194.9 155 67.1
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 7.5e-48 194.1 155 66.5
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.3e-47 193.4 155 67.1
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 3.7e-47 191.8 155 64.5
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 3.7e-47 191.8 155 65.8
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 3.7e-47 191.8 155 67.1
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 4.9e-47 191.4 155 65.8
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 8.3e-47 190.7 158 64.6
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 1.1e-46 190.3 153 67.3
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 1.1e-46 190.3 155 64.5
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 1.4e-46 189.9 144 68.8
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 1.9e-46 189.5 155 66.5
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.9e-46 189.5 158 63.9
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 3.2e-46 188.7 155 65.8
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 3.2e-46 188.7 153 64.1
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 4.1e-46 188.3 156 67.3
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.1e-46 188.3 158 63.9
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 7.0e-46 187.6 156 62.8
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 7.0e-46 187.6 155 63.9
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 9.2e-46 187.2 155 64.5
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.2e-45 186.8 144 70.1
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.2e-45 186.8 155 64.5
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 1.6e-45 186.4 156 66.7
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 1.6e-45 186.4 155 65.8
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 1.6e-45 186.4 155 65.2
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.6e-45 186.4 155 63.9
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 2.0e-45 186.0 153 64.7
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 3.5e-45 185.3 156 64.7
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 4.6e-45 184.9 135 71.9
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 7.8e-45 184.1 153 66.0
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 1.0e-44 183.7 165 62.4
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 1.3e-44 183.3 155 64.5
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.3e-44 183.3 158 63.9
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 1.7e-44 183.0 145 67.6
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 2.3e-44 182.6 158 63.9
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 2.3e-44 182.6 145 70.3
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 3.0e-44 182.2 155 63.2
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 3.0e-44 182.2 141 68.8
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 3.9e-44 181.8 143 68.5
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 5.0e-44 181.4 155 61.9
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 5.0e-44 181.4 155 62.6
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 6.6e-44 181.0 141 66.7
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 6.6e-44 181.0 155 62.6
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 8.6e-44 180.6 144 65.3
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 1.1e-43 180.3 149 63.8
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 1.1e-43 180.3 155 61.9
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 1.1e-43 180.3 153 64.1
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 1.5e-43 179.9 155 62.6
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 1.9e-43 179.5 155 61.9
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 1.9e-43 179.5 158 62.0
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 1.9e-43 179.5 155 63.2
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 2.5e-43 179.1 175 57.7
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 3.3e-43 178.7 143 67.8
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 3.3e-43 178.7 145 64.1
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 4.3e-43 178.3 144 64.6
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 4.3e-43 178.3 151 66.2
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 7.3e-43 177.6 145 66.9
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.2e-42 176.8 158 62.7
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 1.2e-42 176.8 162 61.1
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.2e-42 176.8 139 67.6
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 1.6e-42 176.4 153 62.1
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.1e-42 176.0 155 63.2
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 2.1e-42 176.0 158 61.4
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 2.1e-42 176.0 153 64.1
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 2.1e-42 176.0 141 66.7
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.8e-42 175.6 145 65.5
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 2.8e-42 175.6 147 64.6
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 4.7e-42 174.9 147 63.3
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 6.2e-42 174.5 155 61.3
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 8.1e-42 174.1 155 59.4
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 8.1e-42 174.1 155 59.4
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 8.1e-42 174.1 155 59.4
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 1.1e-41 173.7 158 60.8
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 1.4e-41 173.3 155 59.4
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 1.8e-41 172.9 155 60.6
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.3e-41 172.6 155 61.3
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 6.8e-41 171.0 146 60.3
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 6.8e-41 171.0 155 56.8
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 8.9e-41 170.6 145 63.4
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 8.9e-41 170.6 156 60.3
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 1.2e-40 170.2 122 71.3
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 1.2e-40 170.2 156 60.3
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 4.4e-40 168.3 135 67.4
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 5.8e-40 167.9 141 63.1
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 5.8e-40 167.9 154 62.3
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 5.8e-40 167.9 156 59.6
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 5.8e-40 167.9 155 56.8
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 9.9e-40 167.2 135 65.2
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 6.4e-39 164.5 155 60.0
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 8.3e-39 164.1 141 62.4
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.9e-38 162.9 204 50.0
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 2.4e-38 162.5 136 61.8
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 9.2e-38 160.6 155 59.4
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.2e-37 160.2 144 58.3
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 3.5e-37 158.7 141 61.0
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 3.5e-37 158.7 130 60.0
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 6.0e-37 157.9 155 55.5
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 6.0e-37 157.9 144 57.6
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 3.9e-36 155.2 139 59.7
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 6.6e-36 154.5 151 55.6
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.5e-35 153.3 120 72.5
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 2.5e-35 152.5 104 78.8
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 9.5e-35 150.6 104 76.9
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 1.6e-34 149.8 136 61.8
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 1.6e-34 149.8 136 61.8
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.1e-34 149.4 136 61.8
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 3.4e-32 142.1 155 56.1
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 4.4e-32 141.7 104 73.1
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 3.2e-30 135.6 103 70.9
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 4.1e-30 135.2 149 49.7
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 5.4e-30 134.8 149 51.7
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 9.2e-30 134.0 104 66.3
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.6e-29 133.3 158 48.1
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 2.1e-29 132.9 104 68.3
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 2.3e-28 129.4 103 68.0
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 5.1e-28 128.3 124 56.5
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 2.1e-26 122.9 104 62.5
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.1e-26 122.9 134 48.5
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 1.1e-25 120.6 95 61.1
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 1.4e-25 120.2 132 48.5
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 5.2e-25 118.2 134 47.8
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 5.4e-22 108.2 70 85.7
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 9.3e-22 107.5 108 56.5
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 2.1e-21 106.3 133 48.9
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.3e-20 103.6 135 46.7
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 6.6e-20 101.3 149 40.3
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 9.0e-17 90.9 77 61.0
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.9e-15 85.9 94 44.7
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 6.9e-09 64.7 44 70.5
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 5.8e-08 61.6 46 69.6
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 5.8e-08 61.6 46 69.6
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 1.3e-07 60.5 46 67.4
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 2.9e-07 59.3 47 66.0


User provided reference genes

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